Wall clock time and date at job start Tue Mar 31 2020 05:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86793 * 120.00189 * 2 1 4 4 H 1.48503 * 109.47337 * 239.99761 * 3 2 1 5 5 H 1.48494 * 109.47310 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47123 * 120.00184 * 3 2 1 7 7 C 1.37878 * 119.99866 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99936 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.47036 * 180.02562 * 9 7 2 11 11 C 1.46502 * 120.00002 * 269.99688 * 10 9 7 12 12 C 1.50700 * 109.47117 * 270.00266 * 11 10 9 13 13 C 1.34511 * 125.78670 * 90.00237 * 12 11 10 14 14 C 1.41391 * 106.83730 * 179.97438 * 13 12 11 15 15 C 1.34509 * 106.83815 * 0.02562 * 14 13 12 16 16 O 1.34302 * 108.42625 * 359.73641 * 15 14 13 17 17 C 1.34776 * 119.99719 * 89.99984 * 10 9 7 18 18 O 1.21277 * 120.00466 * 359.97438 * 17 10 9 19 19 C 1.50705 * 119.99438 * 179.97438 * 17 10 9 20 20 H 1.08998 * 115.56144 * 325.68305 * 19 17 10 21 21 C 1.53001 * 117.50044 * 111.38075 * 19 17 10 22 22 C 1.53002 * 60.00217 * 107.48624 * 21 19 17 23 23 H 1.08996 * 117.49983 * 252.48919 * 22 21 19 24 24 C 1.52996 * 117.49714 * 107.48900 * 22 21 19 25 25 C 1.53002 * 117.49888 * 162.64605 * 24 22 21 26 26 C 1.53000 * 117.50107 * 231.30367 * 24 22 21 27 27 H 0.97001 * 120.00079 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47277 * 59.99872 * 9 7 2 29 29 H 1.09002 * 109.47235 * 300.00017 * 9 7 2 30 30 H 1.09003 * 109.46589 * 30.00035 * 11 10 9 31 31 H 1.08994 * 109.47069 * 149.99680 * 11 10 9 32 32 H 1.08002 * 126.58830 * 359.95861 * 13 12 11 33 33 H 1.07997 * 126.57687 * 179.97438 * 14 13 12 34 34 H 1.08004 * 125.78837 * 180.02562 * 15 14 13 35 35 H 1.09004 * 117.49450 * 359.97438 * 21 19 17 36 36 H 1.08995 * 117.51448 * 214.97000 * 21 19 17 37 37 H 1.09002 * 115.54951 * 16.97579 * 24 22 21 38 38 H 1.09000 * 117.49996 * 215.00804 * 25 24 22 39 39 H 1.08999 * 117.49664 * 0.02562 * 25 24 22 40 40 H 1.09008 * 117.49673 * 359.97438 * 26 24 22 41 41 H 1.08999 * 117.49959 * 144.99502 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.6789 -4.1695 -1.2693 12 6 1.7621 -5.2837 -1.7043 13 6 0.6695 -5.1470 -2.4769 14 6 0.1147 -6.4380 -2.6338 15 6 0.9011 -7.2861 -1.9472 16 8 1.9004 -6.5823 -1.3907 17 6 2.6408 -4.1249 1.1667 18 8 2.2471 -3.6637 2.2170 19 6 3.6196 -5.2708 1.1666 20 1 3.5034 -5.9885 0.3546 21 6 5.0395 -4.9871 1.6611 22 6 4.0787 -5.8078 2.5238 23 1 3.6731 -5.3324 3.4168 24 6 4.3397 -7.3110 2.6371 25 6 3.6629 -8.0609 3.7863 26 6 3.1701 -8.2548 2.3501 27 1 -0.4850 0.8400 0.0004 28 1 0.6239 -2.5567 -0.8902 29 1 0.6246 -2.5571 0.8897 30 1 2.6866 -3.3878 -2.0289 31 1 3.6883 -4.5595 -1.1390 32 1 0.2889 -4.2275 -2.8967 33 1 -0.7710 -6.6937 -3.1963 34 1 0.7564 -8.3530 -1.8620 35 1 5.2657 -3.9715 1.9860 36 1 5.8576 -5.5181 1.1745 37 1 5.3357 -7.6390 2.3396 38 1 4.2136 -8.8822 4.2449 39 1 3.0314 -7.4833 4.4613 40 1 2.2145 -7.8045 2.0810 41 1 3.3966 -9.2035 1.8637 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339584385.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:53 Heat of formation + Delta-G solvation = 12.081848 kcal Electronic energy + Delta-G solvation = -23208.021706 eV Core-core repulsion = 19862.701132 eV Total energy + Delta-G solvation = -3345.320574 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.44094 -41.09252 -38.89299 -36.95291 -35.82752 -34.82298 -33.84456 -31.56620 -29.64084 -26.88877 -26.31769 -24.58181 -23.63110 -23.13810 -22.61884 -21.65077 -20.92231 -19.87191 -18.84737 -18.39623 -17.83716 -17.36755 -16.76206 -16.54655 -16.23005 -16.06824 -15.63228 -15.03878 -14.88688 -14.37042 -14.00953 -13.88961 -13.73801 -13.57171 -13.34262 -13.30305 -13.01033 -12.69551 -12.58233 -12.47586 -12.27741 -12.23556 -11.84518 -11.83403 -11.73516 -10.96217 -10.82108 -10.71196 -10.65430 -10.49515 -9.70542 -9.38361 -8.23746 -6.38769 0.75473 1.36800 1.41320 1.48272 1.55303 1.70716 2.13153 2.27387 2.41983 2.74768 3.06069 3.07270 3.53757 3.75723 3.81280 3.82103 4.05038 4.10735 4.16761 4.18407 4.28171 4.37290 4.39342 4.53248 4.58288 4.77865 4.82960 4.89958 4.94414 5.03390 5.05565 5.06220 5.18019 5.22709 5.23769 5.31285 5.37744 5.49808 5.62579 5.77326 6.02693 6.23203 6.61024 6.70871 7.24356 7.39599 8.83968 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012939 B = 0.005696 C = 0.004304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.470672 B = 4914.417031 C = 6504.190683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.969 3.031 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.265 3.735 10 N -0.594 5.594 11 C 0.192 3.808 12 C -0.045 4.045 13 C -0.212 4.212 14 C -0.230 4.230 15 C -0.032 4.032 16 O -0.179 6.179 17 C 0.527 3.473 18 O -0.595 6.595 19 C -0.188 4.188 20 H 0.142 0.858 21 C -0.125 4.125 22 C -0.095 4.095 23 H 0.085 0.915 24 C -0.122 4.122 25 C -0.176 4.176 26 C -0.174 4.174 27 H 0.267 0.733 28 H 0.024 0.976 29 H -0.009 1.009 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.138 0.862 33 H 0.167 0.833 34 H 0.244 0.756 35 H 0.084 0.916 36 H 0.144 0.856 37 H 0.135 0.865 38 H 0.118 0.882 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.189 -18.865 -3.791 21.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.793 3.207 4 H -0.181 1.181 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.582 4.582 8 H 0.076 0.924 9 C 0.144 3.856 10 N -0.323 5.323 11 C 0.069 3.931 12 C -0.096 4.096 13 C -0.232 4.232 14 C -0.249 4.249 15 C -0.100 4.100 16 O -0.075 6.075 17 C 0.317 3.683 18 O -0.476 6.476 19 C -0.209 4.209 20 H 0.159 0.841 21 C -0.162 4.162 22 C -0.114 4.114 23 H 0.103 0.897 24 C -0.140 4.140 25 C -0.212 4.212 26 C -0.211 4.211 27 H 0.076 0.924 28 H 0.042 0.958 29 H 0.009 0.991 30 H 0.132 0.868 31 H 0.135 0.865 32 H 0.156 0.844 33 H 0.184 0.816 34 H 0.260 0.740 35 H 0.102 0.898 36 H 0.162 0.838 37 H 0.153 0.847 38 H 0.136 0.864 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 9.047 -18.588 -3.093 20.903 hybrid contribution -0.840 1.508 -0.031 1.726 sum 8.207 -17.081 -3.124 19.206 Atomic orbital electron populations 1.70058 1.07692 1.28261 1.50811 1.25871 0.95760 1.03098 0.94286 0.85448 0.78280 0.77873 0.79096 1.18121 1.20463 1.20368 1.21654 0.93411 0.91565 1.51534 0.92387 1.18735 0.87762 0.83557 0.95512 1.48177 1.45109 1.33558 1.05502 1.20032 0.95739 0.90952 0.86370 1.22992 1.01191 0.83431 1.01999 1.21908 0.97478 0.99879 1.03985 1.22126 1.04076 0.92227 1.06485 1.24834 0.88031 0.99385 0.97712 1.83983 1.45273 1.17993 1.60284 1.20489 0.81527 0.83326 0.82911 1.90617 1.60372 1.63653 1.32988 1.22310 0.97355 0.99134 1.02106 0.84052 1.23165 0.90705 1.01310 1.01050 1.21781 1.02367 0.94670 0.92547 0.89719 1.21786 0.98584 0.88727 1.04853 1.23065 1.03715 1.03112 0.91355 1.22972 0.97736 1.01227 0.99172 0.92401 0.95820 0.99054 0.86827 0.86536 0.84359 0.81576 0.74031 0.89765 0.83847 0.84742 0.86365 0.90399 0.91073 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 2 C 0.01 0.52 5.46 84.66 0.46 0.98 16 3 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 4 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 7 C -0.54 -31.56 9.39 25.60 0.24 -31.32 16 8 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 9 C 0.27 14.77 5.16 85.63 0.44 15.21 16 10 N -0.59 -26.57 2.44 -830.49 -2.03 -28.59 16 11 C 0.19 6.45 5.58 85.63 0.48 6.93 16 12 C -0.05 -1.44 6.77 24.83 0.17 -1.27 16 13 C -0.21 -6.78 10.81 22.19 0.24 -6.54 16 14 C -0.23 -5.84 10.91 22.19 0.24 -5.60 16 15 C -0.03 -0.71 12.09 66.97 0.81 0.10 16 16 O -0.18 -4.97 9.58 -2.48 -0.02 -4.99 16 17 C 0.53 23.67 7.46 87.66 0.65 24.33 16 18 O -0.59 -32.95 15.84 -3.02 -0.05 -32.99 16 19 C -0.19 -5.95 4.44 -11.54 -0.05 -6.00 16 20 H 0.14 3.92 6.05 -2.39 -0.01 3.91 16 21 C -0.13 -3.18 9.95 30.60 0.30 -2.88 16 22 C -0.09 -2.68 5.38 -10.79 -0.06 -2.74 16 23 H 0.08 2.96 7.67 -2.39 -0.02 2.94 16 24 C -0.12 -2.48 5.87 -10.79 -0.06 -2.54 16 25 C -0.18 -3.40 10.25 30.62 0.31 -3.09 16 26 C -0.17 -3.48 10.18 30.62 0.31 -3.16 16 27 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.02 1.34 8.07 -2.39 -0.02 1.32 16 29 H -0.01 -0.57 7.42 -2.39 -0.02 -0.58 16 30 H 0.11 3.77 8.07 -2.39 -0.02 3.75 16 31 H 0.12 3.14 6.64 -2.39 -0.02 3.13 16 32 H 0.14 4.59 8.06 -2.91 -0.02 4.56 16 33 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 34 H 0.24 2.82 8.06 -2.91 -0.02 2.80 16 35 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.14 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.13 2.02 8.14 -2.39 -0.02 2.01 16 38 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -77.18 352.91 5.72 -71.45 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 1.02 Total: 22.25 kcal Atomic # 6 Polarization: -22.09 SS G_CDS: 4.49 Total: -17.59 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -1.74 Total: -85.19 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.07 Total: -37.98 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -77.18 5.72 -71.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339584385.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.536 kcal (2) G-P(sol) polarization free energy of solvation -77.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds