Wall clock time and date at job start Tue Mar 31 2020 05:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47006 * 179.97438 * 9 7 2 11 11 C 1.46498 * 119.99947 * 89.99681 * 10 9 7 12 12 C 1.50700 * 109.46920 * 90.00059 * 11 10 9 13 13 C 1.34518 * 125.79154 * 90.00131 * 12 11 10 14 14 C 1.41382 * 106.84132 * 179.97438 * 13 12 11 15 15 C 1.34513 * 106.83943 * 359.97438 * 14 13 12 16 16 O 1.34300 * 108.42251 * 359.73921 * 15 14 13 17 17 C 1.34774 * 119.99676 * 269.99477 * 10 9 7 18 18 O 1.21281 * 120.00000 * 0.02562 * 17 10 9 19 19 C 1.50706 * 120.00041 * 180.02562 * 17 10 9 20 20 H 1.08999 * 115.54766 * 34.28274 * 19 17 10 21 21 C 1.52994 * 117.49842 * 248.60795 * 19 17 10 22 22 C 1.52998 * 60.00207 * 252.50967 * 21 19 17 23 23 H 1.08998 * 117.49722 * 107.48569 * 22 21 19 24 24 C 1.52997 * 117.49814 * 252.51427 * 22 21 19 25 25 C 1.53002 * 117.49529 * 197.37001 * 24 22 21 26 26 C 1.52999 * 117.49754 * 128.71162 * 24 22 21 27 27 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 29 29 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 30 30 H 1.08999 * 109.46777 * 209.99449 * 11 10 9 31 31 H 1.08997 * 109.47570 * 329.99760 * 11 10 9 32 32 H 1.08001 * 126.57766 * 0.02980 * 13 12 11 33 33 H 1.08001 * 126.57973 * 180.02562 * 14 13 12 34 34 H 1.07998 * 125.78607 * 179.97438 * 15 14 13 35 35 H 1.09000 * 117.49866 * 0.02562 * 21 19 17 36 36 H 1.09004 * 117.49500 * 144.99036 * 21 19 17 37 37 H 1.08998 * 115.55062 * 343.03600 * 24 22 21 38 38 H 1.09000 * 117.50202 * 359.97438 * 25 24 22 39 39 H 1.09003 * 117.49701 * 145.01818 * 25 24 22 40 40 H 1.09004 * 117.49617 * 214.97406 * 26 24 22 41 41 H 1.08996 * 117.50464 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6793 -4.1693 1.2692 12 6 1.7626 -5.2835 1.7043 13 6 1.8982 -6.5834 1.3859 14 6 0.8268 -7.2700 2.0020 15 6 0.1009 -6.3487 2.6605 16 8 0.6758 -5.1482 2.4817 17 6 2.6410 -4.1248 -1.1667 18 8 2.2472 -3.6636 -2.2170 19 6 3.6200 -5.2706 -1.1668 20 1 3.5041 -5.9879 -0.3543 21 6 5.0396 -4.9868 -1.6616 22 6 4.0787 -5.8078 -2.5240 23 1 3.6724 -5.3324 -3.4167 24 6 4.3398 -7.3111 -2.6371 25 6 3.6630 -8.0610 -3.7862 26 6 3.1702 -8.2547 -2.3499 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6242 -2.5567 0.8904 29 1 0.6248 -2.5571 -0.8896 30 1 3.6887 -4.5593 1.1388 31 1 2.6871 -3.3877 2.0289 32 1 2.6767 -7.0191 0.7772 33 1 0.6295 -8.3307 1.9539 34 1 -0.7907 -6.5422 3.2384 35 1 5.2656 -3.9713 -1.9868 36 1 5.8578 -5.5174 -1.1746 37 1 5.3358 -7.6389 -2.3396 38 1 3.0314 -7.4836 -4.4613 39 1 4.2136 -8.8826 -4.2444 40 1 3.3968 -9.2037 -1.8638 41 1 2.2149 -7.8047 -2.0800 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339584386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:56 Heat of formation + Delta-G solvation = 29.843961 kcal Electronic energy + Delta-G solvation = -23244.566649 eV Core-core repulsion = 19900.016298 eV Total energy + Delta-G solvation = -3344.550351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.39691 -39.70702 -37.78137 -35.41038 -34.74716 -33.10517 -32.67241 -30.18319 -27.35607 -25.78656 -24.42538 -23.36482 -22.51564 -22.06098 -21.60023 -20.60254 -19.96341 -18.50890 -17.56901 -16.93604 -16.48893 -15.93562 -15.62808 -15.26081 -14.75530 -14.65925 -13.88185 -13.80467 -13.60318 -13.10694 -12.74131 -12.63303 -12.52128 -12.27499 -11.93229 -11.70804 -11.64086 -11.42061 -11.31540 -10.99320 -10.85860 -10.79540 -10.59435 -10.09843 -10.00318 -9.79074 -9.62175 -9.20995 -9.06007 -8.41435 -8.35854 -7.76477 -6.38365 -4.10497 1.84278 2.69663 2.98416 3.22854 3.43049 3.47274 3.55059 3.65040 3.89791 4.06888 4.53470 4.57372 4.77931 4.84265 4.86362 4.99026 5.05233 5.12121 5.13816 5.25301 5.34810 5.39102 5.41473 5.45554 5.56619 5.74609 5.80205 5.81856 5.89090 5.96140 6.06782 6.07921 6.16435 6.23398 6.35700 6.61015 6.80363 7.11145 7.25298 7.36511 8.02444 8.19432 8.41582 8.76754 8.94575 9.59556 10.99107 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012716 B = 0.005754 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.368326 B = 4864.742873 C = 6491.630338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.020 3.980 3 Si 1.072 2.928 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.287 1.287 7 C -0.607 4.607 8 H 0.052 0.948 9 C 0.236 3.764 10 N -0.585 5.585 11 C 0.189 3.811 12 C -0.016 4.016 13 C -0.211 4.211 14 C -0.216 4.216 15 C -0.044 4.044 16 O -0.167 6.167 17 C 0.539 3.461 18 O -0.535 6.535 19 C -0.188 4.188 20 H 0.122 0.878 21 C -0.146 4.146 22 C -0.094 4.094 23 H 0.118 0.882 24 C -0.124 4.124 25 C -0.175 4.175 26 C -0.178 4.178 27 H 0.268 0.732 28 H 0.023 0.977 29 H 0.033 0.967 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.199 0.801 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.770 -17.529 2.289 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.184 4.184 3 Si 0.900 3.100 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.646 4.646 8 H 0.071 0.929 9 C 0.117 3.883 10 N -0.316 5.316 11 C 0.064 3.936 12 C -0.068 4.068 13 C -0.231 4.231 14 C -0.235 4.235 15 C -0.112 4.112 16 O -0.061 6.061 17 C 0.326 3.674 18 O -0.412 6.412 19 C -0.209 4.209 20 H 0.139 0.861 21 C -0.184 4.184 22 C -0.113 4.113 23 H 0.136 0.864 24 C -0.142 4.142 25 C -0.212 4.212 26 C -0.215 4.215 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.121 0.879 31 H 0.119 0.881 32 H 0.164 0.836 33 H 0.162 0.838 34 H 0.216 0.784 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.124 0.876 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.231 -15.303 1.847 17.026 hybrid contribution 0.073 -2.090 0.144 2.097 sum 7.305 -17.394 1.991 18.970 Atomic orbital electron populations 1.70794 1.06827 1.30489 1.46266 1.25811 0.96433 1.02591 0.93565 0.83505 0.74876 0.75144 0.76506 1.20667 1.21416 1.21397 1.22215 0.94629 0.91569 1.56146 0.92925 1.19390 0.88092 0.83500 0.97307 1.47994 1.45930 1.34227 1.03415 1.19873 0.93110 0.92584 0.88054 1.23331 0.90044 0.96936 0.96522 1.21619 1.02396 0.92985 1.06098 1.21755 0.97807 1.00519 1.03461 1.24023 1.00505 0.82124 1.04594 1.84104 1.34485 1.32834 1.54723 1.19474 0.81424 0.82627 0.83857 1.90664 1.58120 1.61416 1.30969 1.22572 0.97352 1.00685 1.00311 0.86082 1.23024 0.91032 1.01889 1.02408 1.21784 1.02519 0.92419 0.94552 0.86409 1.21758 0.97157 0.91034 1.04233 1.22985 1.03874 1.02760 0.91591 1.22990 0.98985 1.00535 0.98992 0.92220 0.95865 0.94885 0.87879 0.88140 0.83614 0.83755 0.78443 0.88004 0.88054 0.87561 0.88594 0.88902 0.88942 0.88548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.03 13.65 55.43 0.76 -27.27 16 2 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 3 Si 1.07 25.68 29.90 -169.99 -5.08 20.59 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.61 -17.44 9.39 -34.44 -0.32 -17.77 16 8 H 0.05 1.51 7.81 -52.48 -0.41 1.10 16 9 C 0.24 6.30 4.47 -5.19 -0.02 6.27 16 10 N -0.59 -12.68 2.44 -176.43 -0.43 -13.12 16 11 C 0.19 3.21 5.63 -5.20 -0.03 3.18 16 12 C -0.02 -0.26 6.90 -35.62 -0.25 -0.51 16 13 C -0.21 -2.95 10.09 -39.70 -0.40 -3.35 16 14 C -0.22 -2.74 10.91 -39.70 -0.43 -3.18 16 15 C -0.04 -0.58 12.09 29.42 0.36 -0.23 16 16 O -0.17 -2.82 10.65 5.72 0.06 -2.76 16 17 C 0.54 11.46 7.46 -10.98 -0.08 11.38 16 18 O -0.53 -13.76 15.84 5.56 0.09 -13.67 16 19 C -0.19 -2.88 4.45 -91.77 -0.41 -3.29 16 20 H 0.12 1.61 4.35 -51.93 -0.23 1.38 16 21 C -0.15 -1.91 9.95 -26.74 -0.27 -2.18 16 22 C -0.09 -1.30 5.38 -90.62 -0.49 -1.79 16 23 H 0.12 1.90 7.67 -51.93 -0.40 1.50 16 24 C -0.12 -1.34 5.87 -90.62 -0.53 -1.87 16 25 C -0.18 -1.78 10.25 -26.69 -0.27 -2.05 16 26 C -0.18 -1.86 10.18 -26.69 -0.27 -2.13 16 27 H 0.27 8.27 7.22 -40.82 -0.29 7.97 16 28 H 0.02 0.63 7.94 -51.93 -0.41 0.22 16 29 H 0.03 0.99 7.29 -51.93 -0.38 0.61 16 30 H 0.10 1.41 6.64 -51.93 -0.34 1.07 16 31 H 0.10 1.76 8.07 -51.93 -0.42 1.34 16 32 H 0.15 1.76 6.10 -52.49 -0.32 1.44 16 33 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 34 H 0.20 1.82 8.06 -52.49 -0.42 1.39 16 35 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 348.49 15.07 5.25 5.25 Total: -1.00 -34.66 348.49 -8.68 -43.34 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.80 Total: 4.65 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -3.52 Total: -17.01 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.33 Total: -40.39 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.15 Total: -16.43 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -5.08 Total: 20.59 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.66 -8.68 -43.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339584386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.179 kcal (2) G-P(sol) polarization free energy of solvation -34.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds