Wall clock time and date at job start Tue Mar 31 2020 05:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48506 * 109.47297 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47261 * 239.99650 * 3 2 1 6 6 H 1.48500 * 109.47454 * 119.99643 * 3 2 1 7 7 C 1.37875 * 120.00192 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00046 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.47006 * 179.97438 * 9 7 2 11 11 C 1.46498 * 119.99947 * 89.99681 * 10 9 7 12 12 C 1.50700 * 109.46920 * 90.00059 * 11 10 9 13 13 C 1.34518 * 125.79154 * 90.00131 * 12 11 10 14 14 C 1.41382 * 106.84132 * 179.97438 * 13 12 11 15 15 C 1.34513 * 106.83943 * 359.97438 * 14 13 12 16 16 O 1.34300 * 108.42251 * 359.73921 * 15 14 13 17 17 C 1.34774 * 119.99676 * 269.99477 * 10 9 7 18 18 O 1.21281 * 120.00000 * 0.02562 * 17 10 9 19 19 C 1.50706 * 120.00041 * 180.02562 * 17 10 9 20 20 H 1.08999 * 115.54766 * 34.28274 * 19 17 10 21 21 C 1.52994 * 117.49842 * 248.60795 * 19 17 10 22 22 C 1.52998 * 60.00207 * 252.50967 * 21 19 17 23 23 H 1.08998 * 117.49722 * 107.48569 * 22 21 19 24 24 C 1.52997 * 117.49814 * 252.51427 * 22 21 19 25 25 C 1.53002 * 117.49529 * 197.37001 * 24 22 21 26 26 C 1.52999 * 117.49754 * 128.71162 * 24 22 21 27 27 H 0.97001 * 119.99934 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46665 * 299.99501 * 9 7 2 29 29 H 1.08993 * 109.47304 * 59.99945 * 9 7 2 30 30 H 1.08999 * 109.46777 * 209.99449 * 11 10 9 31 31 H 1.08997 * 109.47570 * 329.99760 * 11 10 9 32 32 H 1.08001 * 126.57766 * 0.02980 * 13 12 11 33 33 H 1.08001 * 126.57973 * 180.02562 * 14 13 12 34 34 H 1.07998 * 125.78607 * 179.97438 * 15 14 13 35 35 H 1.09000 * 117.49866 * 0.02562 * 21 19 17 36 36 H 1.09004 * 117.49500 * 144.99036 * 21 19 17 37 37 H 1.08998 * 115.55062 * 343.03600 * 24 22 21 38 38 H 1.09000 * 117.50202 * 359.97438 * 25 24 22 39 39 H 1.09003 * 117.49701 * 145.01818 * 25 24 22 40 40 H 1.09004 * 117.49617 * 214.97406 * 26 24 22 41 41 H 1.08996 * 117.50464 * 359.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2125 6 1 3.1028 1.6966 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6793 -4.1693 1.2692 12 6 1.7626 -5.2835 1.7043 13 6 1.8982 -6.5834 1.3859 14 6 0.8268 -7.2700 2.0020 15 6 0.1009 -6.3487 2.6605 16 8 0.6758 -5.1482 2.4817 17 6 2.6410 -4.1248 -1.1667 18 8 2.2472 -3.6636 -2.2170 19 6 3.6200 -5.2706 -1.1668 20 1 3.5041 -5.9879 -0.3543 21 6 5.0396 -4.9868 -1.6616 22 6 4.0787 -5.8078 -2.5240 23 1 3.6724 -5.3324 -3.4167 24 6 4.3398 -7.3111 -2.6371 25 6 3.6630 -8.0610 -3.7862 26 6 3.1702 -8.2547 -2.3499 27 1 -0.4850 -0.8401 -0.0004 28 1 0.6242 -2.5567 0.8904 29 1 0.6248 -2.5571 -0.8896 30 1 3.6887 -4.5593 1.1388 31 1 2.6871 -3.3877 2.0289 32 1 2.6767 -7.0191 0.7772 33 1 0.6295 -8.3307 1.9539 34 1 -0.7907 -6.5422 3.2384 35 1 5.2656 -3.9713 -1.9868 36 1 5.8578 -5.5174 -1.1746 37 1 5.3358 -7.6389 -2.3396 38 1 3.0314 -7.4836 -4.4613 39 1 4.2136 -8.8826 -4.2444 40 1 3.3968 -9.2037 -1.8638 41 1 2.2149 -7.8047 -2.0800 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339584386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:55 Heat of formation + Delta-G solvation = 9.222831 kcal Electronic energy + Delta-G solvation = -23245.460848 eV Core-core repulsion = 19900.016298 eV Total energy + Delta-G solvation = -3345.444550 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.53232 -41.21133 -38.95529 -37.10638 -35.91748 -35.11526 -33.91537 -31.58610 -29.27846 -27.10297 -26.12523 -24.65976 -23.81024 -23.19257 -22.69740 -21.79198 -21.00632 -20.00906 -19.16566 -18.68166 -17.85425 -17.38751 -16.80203 -16.51913 -16.27319 -15.77370 -15.63445 -15.25554 -15.17373 -14.45004 -14.21457 -13.91949 -13.69491 -13.66379 -13.53309 -13.28959 -13.20307 -12.74011 -12.53212 -12.48533 -12.29429 -11.96827 -11.87802 -11.79900 -11.30853 -10.99121 -10.87233 -10.80134 -10.65643 -10.54972 -9.75488 -9.45808 -8.74609 -6.50077 0.67980 1.46070 1.49431 1.57610 1.65434 1.76961 2.09793 2.21092 2.52164 2.69525 3.03479 3.06580 3.47328 3.68540 3.74162 3.75477 3.95054 4.05108 4.06425 4.15707 4.18505 4.26911 4.38462 4.46290 4.51253 4.63374 4.76417 4.81881 4.83454 4.85008 4.92894 5.03054 5.04556 5.16654 5.21047 5.29862 5.35285 5.40159 5.61294 5.75147 6.07506 6.19986 6.37777 6.52137 7.19760 7.33404 8.60465 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.012716 B = 0.005754 C = 0.004312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.368326 B = 4864.742873 C = 6491.630338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.032 4.032 3 Si 1.122 2.878 4 H -0.280 1.280 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.616 4.616 8 H 0.052 0.948 9 C 0.252 3.748 10 N -0.591 5.591 11 C 0.188 3.812 12 C -0.056 4.056 13 C -0.194 4.194 14 C -0.218 4.218 15 C -0.049 4.049 16 O -0.202 6.202 17 C 0.528 3.472 18 O -0.596 6.596 19 C -0.193 4.193 20 H 0.150 0.850 21 C -0.125 4.125 22 C -0.094 4.094 23 H 0.083 0.917 24 C -0.120 4.120 25 C -0.178 4.178 26 C -0.175 4.175 27 H 0.252 0.748 28 H 0.010 0.990 29 H -0.013 1.013 30 H 0.142 0.858 31 H 0.087 0.913 32 H 0.169 0.831 33 H 0.178 0.822 34 H 0.232 0.768 35 H 0.081 0.919 36 H 0.149 0.851 37 H 0.138 0.862 38 H 0.076 0.924 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.441 -20.140 3.365 22.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.230 4.230 3 Si 0.942 3.058 4 H -0.205 1.205 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.654 4.654 8 H 0.070 0.930 9 C 0.130 3.870 10 N -0.320 5.320 11 C 0.066 3.934 12 C -0.107 4.107 13 C -0.214 4.214 14 C -0.237 4.237 15 C -0.116 4.116 16 O -0.098 6.098 17 C 0.319 3.681 18 O -0.477 6.477 19 C -0.213 4.213 20 H 0.167 0.833 21 C -0.162 4.162 22 C -0.112 4.112 23 H 0.101 0.899 24 C -0.138 4.138 25 C -0.215 4.215 26 C -0.212 4.212 27 H 0.061 0.939 28 H 0.028 0.972 29 H 0.005 0.995 30 H 0.160 0.840 31 H 0.105 0.895 32 H 0.187 0.813 33 H 0.195 0.805 34 H 0.249 0.751 35 H 0.100 0.900 36 H 0.166 0.834 37 H 0.156 0.844 38 H 0.095 0.905 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.927 -17.969 2.962 20.741 hybrid contribution -0.856 -1.360 -0.204 1.620 sum 9.072 -19.329 2.758 21.529 Atomic orbital electron populations 1.70926 1.07899 1.29560 1.48277 1.27480 0.96481 1.06749 0.92316 0.82900 0.74143 0.70764 0.78035 1.20480 1.20339 1.18310 1.22502 0.94667 0.92645 1.55602 0.93010 1.18820 0.88559 0.85268 0.94318 1.48012 1.44967 1.33211 1.05850 1.20074 0.95212 0.92795 0.85351 1.23172 0.91034 0.97497 0.98969 1.21962 1.02729 0.91991 1.04701 1.22183 0.96923 1.02021 1.02581 1.24878 1.01180 0.81109 1.04423 1.84070 1.35233 1.34964 1.55555 1.20575 0.81521 0.83446 0.82584 1.90623 1.60386 1.63729 1.33011 1.22458 0.97317 0.99043 1.02487 0.83309 1.23202 0.90684 1.01341 1.00997 1.21789 1.02238 0.94792 0.92414 0.89901 1.21797 0.98691 0.88482 1.04814 1.23062 1.03806 1.03168 0.91473 1.23021 0.97734 1.01299 0.99176 0.93892 0.97246 0.99480 0.84041 0.89503 0.81324 0.80469 0.75141 0.89995 0.83351 0.84437 0.90547 0.86421 0.86230 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.84 13.65 21.45 0.29 -59.55 16 2 C -0.03 -1.94 5.46 84.65 0.46 -1.48 16 3 Si 1.12 52.05 29.90 68.60 2.05 54.10 16 4 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.05 16 7 C -0.62 -36.89 9.39 25.60 0.24 -36.65 16 8 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 9 C 0.25 14.36 4.47 85.63 0.38 14.75 16 10 N -0.59 -26.73 2.44 -830.51 -2.03 -28.76 16 11 C 0.19 6.44 5.63 85.63 0.48 6.92 16 12 C -0.06 -1.79 6.90 24.83 0.17 -1.62 16 13 C -0.19 -4.95 10.09 22.19 0.22 -4.72 16 14 C -0.22 -4.90 10.91 22.19 0.24 -4.66 16 15 C -0.05 -1.21 12.09 66.97 0.81 -0.40 16 16 O -0.20 -6.89 10.65 -2.46 -0.03 -6.91 16 17 C 0.53 23.33 7.46 87.66 0.65 23.99 16 18 O -0.60 -32.84 15.84 -3.03 -0.05 -32.89 16 19 C -0.19 -5.65 4.45 -11.54 -0.05 -5.70 16 20 H 0.15 3.47 4.35 -2.39 -0.01 3.46 16 21 C -0.13 -2.96 9.95 30.59 0.30 -2.65 16 22 C -0.09 -2.47 5.38 -10.79 -0.06 -2.53 16 23 H 0.08 2.79 7.67 -2.39 -0.02 2.78 16 24 C -0.12 -2.19 5.87 -10.79 -0.06 -2.26 16 25 C -0.18 -3.22 10.25 30.62 0.31 -2.90 16 26 C -0.18 -3.12 10.18 30.62 0.31 -2.81 16 27 H 0.25 16.60 7.22 -92.71 -0.67 15.93 16 28 H 0.01 0.56 7.94 -2.39 -0.02 0.54 16 29 H -0.01 -0.84 7.29 -2.39 -0.02 -0.85 16 30 H 0.14 3.61 6.64 -2.39 -0.02 3.59 16 31 H 0.09 3.14 8.07 -2.39 -0.02 3.12 16 32 H 0.17 3.37 6.10 -2.91 -0.02 3.36 16 33 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.23 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 36 H 0.15 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -82.57 348.49 5.80 -76.77 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 1.13 Total: 19.97 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 4.43 Total: -22.74 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -1.73 Total: -88.31 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.07 Total: -39.80 kcal Atomic # 14 Polarization: 52.05 SS G_CDS: 2.05 Total: 54.10 kcal Total: -82.57 5.80 -76.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339584386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.994 kcal (2) G-P(sol) polarization free energy of solvation -82.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds