Wall clock time and date at job start Tue Mar 31 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00243 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99984 * 3 2 1 5 5 H 1.48504 * 109.46951 * 29.99430 * 3 2 1 6 6 H 1.48497 * 109.47572 * 149.99818 * 3 2 1 7 7 C 1.37882 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99644 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00174 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.47045 * 179.97438 * 9 7 2 11 11 C 1.46494 * 120.00089 * 270.00488 * 10 9 7 12 12 C 1.50700 * 109.46827 * 269.99783 * 11 10 9 13 13 C 1.34523 * 125.78767 * 89.72156 * 12 11 10 14 14 C 1.41387 * 106.83687 * 179.88902 * 13 12 11 15 15 C 1.34510 * 106.84152 * 0.36726 * 14 13 12 16 16 O 1.34303 * 108.42479 * 359.77586 * 15 14 13 17 17 C 1.34776 * 119.99426 * 90.00207 * 10 9 7 18 18 O 1.21283 * 120.00407 * 0.02562 * 17 10 9 19 19 C 1.50707 * 119.99581 * 179.97438 * 17 10 9 20 20 H 1.08996 * 115.54914 * 44.46868 * 19 17 10 21 21 C 1.52998 * 117.49872 * 258.75606 * 19 17 10 22 22 C 1.52999 * 117.49548 * 190.13379 * 19 17 10 23 23 H 1.08995 * 117.49851 * 214.99805 * 22 19 17 24 24 C 1.52994 * 117.50040 * 0.02562 * 22 19 17 25 25 C 1.53002 * 117.49590 * 254.38821 * 24 22 19 26 26 C 1.53000 * 60.00082 * 252.50966 * 25 24 22 27 27 H 0.96994 * 120.00006 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46656 * 60.00295 * 9 7 2 29 29 H 1.08994 * 109.47341 * 300.00227 * 9 7 2 30 30 H 1.08999 * 109.47673 * 29.99872 * 11 10 9 31 31 H 1.08998 * 109.47281 * 150.00436 * 11 10 9 32 32 H 1.07997 * 126.57963 * 0.02562 * 13 12 11 33 33 H 1.08000 * 126.57600 * 180.12251 * 14 13 12 34 34 H 1.08005 * 125.78877 * 179.74838 * 15 14 13 35 35 H 1.08997 * 117.50002 * 145.01722 * 21 19 17 36 36 H 1.09006 * 117.49644 * 0.02562 * 21 19 17 37 37 H 1.08996 * 115.55294 * 40.09473 * 24 22 19 38 38 H 1.08998 * 117.49937 * 0.02562 * 25 24 22 39 39 H 1.09001 * 117.49948 * 145.02413 * 25 24 22 40 40 H 1.09002 * 117.50092 * 252.50835 * 26 25 24 41 41 H 1.09004 * 117.51807 * 107.48246 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5753 0.0013 11 6 4.2445 -3.2645 1.2706 12 6 5.6679 -3.0273 1.7049 13 6 6.0970 -2.0089 2.4720 14 6 7.4918 -2.1762 2.6321 15 6 7.8329 -3.2821 1.9465 16 8 6.7242 -3.7935 1.3870 17 6 4.2241 -3.2118 -1.1653 18 8 4.0220 -2.6411 -2.2162 19 6 4.7270 -4.6325 -1.1640 20 1 4.2349 -5.3047 -0.4611 21 6 6.2174 -4.8546 -1.4292 22 6 5.1871 -5.2203 -2.4996 23 1 4.9977 -6.2792 -2.6753 24 6 5.1019 -4.3206 -3.7341 25 6 3.9838 -4.6043 -4.7392 26 6 5.4328 -4.9481 -5.0897 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6796 0.8895 29 1 3.8746 -0.6808 -0.8904 30 1 3.5640 -2.8797 2.0302 31 1 4.0775 -4.3339 1.1415 32 1 5.4918 -1.2169 2.8877 33 1 8.1565 -1.5363 3.1935 34 1 8.8294 -3.6895 1.8603 35 1 6.7062 -5.6729 -0.9006 36 1 6.8342 -3.9731 -1.6042 37 1 5.3868 -3.2801 -3.5781 38 1 3.3086 -5.4317 -4.5206 39 1 3.5327 -3.7504 -5.2446 40 1 5.9351 -4.3203 -5.8258 41 1 5.7117 -6.0018 -5.1020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339584387.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:58 Heat of formation + Delta-G solvation = 42.984017 kcal Electronic energy + Delta-G solvation = -23466.984587 eV Core-core repulsion = 20123.004031 eV Total energy + Delta-G solvation = -3343.980555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.35831 -39.72362 -37.39363 -35.22912 -34.78520 -32.81773 -32.57501 -30.31367 -28.29667 -25.59135 -24.42225 -23.33618 -22.08733 -21.64356 -21.42113 -20.54065 -20.07984 -18.37169 -17.21824 -16.85234 -16.63235 -15.94004 -15.42480 -15.20185 -14.77607 -14.33427 -14.09820 -13.88437 -13.21384 -12.78450 -12.71517 -12.65974 -12.54537 -12.33201 -12.08145 -11.70132 -11.57344 -11.35043 -11.15118 -11.00928 -10.92500 -10.60371 -10.51791 -10.19786 -9.75698 -9.69485 -9.55155 -9.29683 -8.75912 -8.60536 -8.35719 -7.83186 -6.10358 -4.09307 1.85589 2.75584 3.02998 3.26591 3.28208 3.34027 3.36268 3.75040 3.93510 4.38067 4.44031 4.68365 4.85126 4.97380 5.02765 5.15802 5.19660 5.20019 5.24819 5.37859 5.49031 5.50852 5.58359 5.62990 5.83963 5.85169 5.86968 5.95061 6.10111 6.11844 6.18309 6.24862 6.30095 6.42593 6.64473 6.68567 6.73492 6.92988 7.23277 7.35744 7.58561 8.17466 8.44771 8.91636 8.98075 9.49925 11.02877 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010288 B = 0.007326 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.871799 B = 3821.249203 C = 5927.486819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.074 3.926 3 Si 0.873 3.127 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.076 0.924 9 C 0.218 3.782 10 N -0.587 5.587 11 C 0.192 3.808 12 C -0.021 4.021 13 C -0.201 4.201 14 C -0.215 4.215 15 C -0.051 4.051 16 O -0.168 6.168 17 C 0.541 3.459 18 O -0.522 6.522 19 C -0.181 4.181 20 H 0.119 0.881 21 C -0.139 4.139 22 C -0.093 4.093 23 H 0.105 0.895 24 C -0.102 4.102 25 C -0.165 4.165 26 C -0.194 4.194 27 H 0.265 0.735 28 H 0.030 0.970 29 H 0.036 0.964 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.197 0.803 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.120 0.880 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.226 -10.364 1.725 18.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.128 4.128 3 Si 0.700 3.300 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.094 0.906 9 C 0.097 3.903 10 N -0.317 5.317 11 C 0.068 3.932 12 C -0.072 4.072 13 C -0.221 4.221 14 C -0.234 4.234 15 C -0.119 4.119 16 O -0.063 6.063 17 C 0.328 3.672 18 O -0.398 6.398 19 C -0.202 4.202 20 H 0.137 0.863 21 C -0.176 4.176 22 C -0.112 4.112 23 H 0.123 0.877 24 C -0.120 4.120 25 C -0.202 4.202 26 C -0.231 4.231 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.134 0.866 31 H 0.105 0.895 32 H 0.165 0.835 33 H 0.161 0.839 34 H 0.214 0.786 35 H 0.118 0.882 36 H 0.112 0.888 37 H 0.138 0.862 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.900 -10.161 0.969 18.061 hybrid contribution 0.389 1.161 0.399 1.288 sum 15.289 -9.000 1.369 17.794 Atomic orbital electron populations 1.69889 1.06165 1.26988 1.50395 1.24831 0.94721 0.98846 0.94428 0.86897 0.80231 0.83957 0.78913 1.19941 1.21033 1.19032 1.21318 0.89063 0.94879 1.51478 0.90597 1.19675 0.95615 0.77489 0.97471 1.47925 1.64158 1.15943 1.03723 1.19875 0.86059 0.98809 0.88487 1.23286 0.90110 0.93270 1.00576 1.21688 0.95234 1.00885 1.04279 1.21804 0.96046 1.00056 1.05521 1.23933 0.90529 0.97336 1.00073 1.84047 1.15278 1.47604 1.59396 1.19452 0.77501 0.86456 0.83748 1.90649 1.51202 1.67593 1.30344 1.22320 0.99495 0.96570 1.01851 0.86270 1.22853 0.90113 1.03213 1.01429 1.21760 1.02590 0.98258 0.88581 0.87655 1.21776 1.03200 0.99517 0.87514 1.22745 0.91008 1.02964 1.03524 1.22997 0.99570 1.00903 0.99663 0.92541 0.95233 0.94563 0.86636 0.89459 0.83495 0.83914 0.78625 0.88210 0.88771 0.86209 0.89425 0.88963 0.89377 0.89510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.38 13.96 55.43 0.77 -26.61 16 2 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 3 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 4 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 7 C -0.53 -14.91 9.94 -34.44 -0.34 -15.25 16 8 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 9 C 0.22 5.25 4.23 -5.19 -0.02 5.23 16 10 N -0.59 -11.91 2.44 -176.43 -0.43 -12.34 16 11 C 0.19 3.06 5.76 -5.20 -0.03 3.03 16 12 C -0.02 -0.31 6.90 -35.62 -0.25 -0.56 16 13 C -0.20 -2.96 10.81 -39.70 -0.43 -3.39 16 14 C -0.22 -2.69 10.91 -39.70 -0.43 -3.12 16 15 C -0.05 -0.58 12.09 29.41 0.36 -0.22 16 16 O -0.17 -2.29 9.80 5.70 0.06 -2.23 16 17 C 0.54 10.96 7.39 -10.98 -0.08 10.88 16 18 O -0.52 -12.40 12.91 5.55 0.07 -12.32 16 19 C -0.18 -2.77 5.04 -91.77 -0.46 -3.23 16 20 H 0.12 1.60 6.87 -51.93 -0.36 1.24 16 21 C -0.14 -1.79 9.11 -26.73 -0.24 -2.03 16 22 C -0.09 -1.29 5.85 -90.62 -0.53 -1.82 16 23 H 0.11 1.25 8.14 -51.93 -0.42 0.82 16 24 C -0.10 -1.59 4.09 -90.62 -0.37 -1.96 16 25 C -0.17 -2.49 10.25 -26.73 -0.27 -2.76 16 26 C -0.19 -2.49 10.25 -26.73 -0.27 -2.77 16 27 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 29 H 0.04 0.95 6.85 -51.93 -0.36 0.59 16 30 H 0.12 1.81 8.07 -51.93 -0.42 1.39 16 31 H 0.09 1.18 6.18 -51.93 -0.32 0.86 16 32 H 0.15 2.13 8.06 -52.49 -0.42 1.70 16 33 H 0.14 1.46 8.06 -52.49 -0.42 1.03 16 34 H 0.20 1.44 8.06 -52.48 -0.42 1.02 16 35 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.12 2.21 6.40 -51.93 -0.33 1.88 16 38 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 344.47 15.07 5.19 5.19 Total: -1.00 -33.07 344.47 -8.46 -41.53 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.97 Total: 5.90 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -3.48 Total: -15.94 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.34 Total: -38.95 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.13 Total: -14.55 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.07 -8.46 -41.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339584387.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.514 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds