Wall clock time and date at job start Tue Mar 31 2020 05:40:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00243 * 2 1 4 4 H 1.48503 * 109.46889 * 269.99984 * 3 2 1 5 5 H 1.48504 * 109.46951 * 29.99430 * 3 2 1 6 6 H 1.48497 * 109.47572 * 149.99818 * 3 2 1 7 7 C 1.37882 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99644 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00174 * 179.97438 * 7 2 1 10 10 N 1.46507 * 109.47045 * 179.97438 * 9 7 2 11 11 C 1.46494 * 120.00089 * 270.00488 * 10 9 7 12 12 C 1.50700 * 109.46827 * 269.99783 * 11 10 9 13 13 C 1.34523 * 125.78767 * 89.72156 * 12 11 10 14 14 C 1.41387 * 106.83687 * 179.88902 * 13 12 11 15 15 C 1.34510 * 106.84152 * 0.36726 * 14 13 12 16 16 O 1.34303 * 108.42479 * 359.77586 * 15 14 13 17 17 C 1.34776 * 119.99426 * 90.00207 * 10 9 7 18 18 O 1.21283 * 120.00407 * 0.02562 * 17 10 9 19 19 C 1.50707 * 119.99581 * 179.97438 * 17 10 9 20 20 H 1.08996 * 115.54914 * 44.46868 * 19 17 10 21 21 C 1.52998 * 117.49872 * 258.75606 * 19 17 10 22 22 C 1.52999 * 117.49548 * 190.13379 * 19 17 10 23 23 H 1.08995 * 117.49851 * 214.99805 * 22 19 17 24 24 C 1.52994 * 117.50040 * 0.02562 * 22 19 17 25 25 C 1.53002 * 117.49590 * 254.38821 * 24 22 19 26 26 C 1.53000 * 60.00082 * 252.50966 * 25 24 22 27 27 H 0.96994 * 120.00006 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.46656 * 60.00295 * 9 7 2 29 29 H 1.08994 * 109.47341 * 300.00227 * 9 7 2 30 30 H 1.08999 * 109.47673 * 29.99872 * 11 10 9 31 31 H 1.08998 * 109.47281 * 150.00436 * 11 10 9 32 32 H 1.07997 * 126.57963 * 0.02562 * 13 12 11 33 33 H 1.08000 * 126.57600 * 180.12251 * 14 13 12 34 34 H 1.08005 * 125.78877 * 179.74838 * 15 14 13 35 35 H 1.08997 * 117.50002 * 145.01722 * 21 19 17 36 36 H 1.09006 * 117.49644 * 0.02562 * 21 19 17 37 37 H 1.08996 * 115.55294 * 40.09473 * 24 22 19 38 38 H 1.08998 * 117.49937 * 0.02562 * 25 24 22 39 39 H 1.09001 * 117.49948 * 145.02413 * 25 24 22 40 40 H 1.09002 * 117.50092 * 252.50835 * 26 25 24 41 41 H 1.09004 * 117.51807 * 107.48246 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5753 0.0013 11 6 4.2445 -3.2645 1.2706 12 6 5.6679 -3.0273 1.7049 13 6 6.0970 -2.0089 2.4720 14 6 7.4918 -2.1762 2.6321 15 6 7.8329 -3.2821 1.9465 16 8 6.7242 -3.7935 1.3870 17 6 4.2241 -3.2118 -1.1653 18 8 4.0220 -2.6411 -2.2162 19 6 4.7270 -4.6325 -1.1640 20 1 4.2349 -5.3047 -0.4611 21 6 6.2174 -4.8546 -1.4292 22 6 5.1871 -5.2203 -2.4996 23 1 4.9977 -6.2792 -2.6753 24 6 5.1019 -4.3206 -3.7341 25 6 3.9838 -4.6043 -4.7392 26 6 5.4328 -4.9481 -5.0897 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6796 0.8895 29 1 3.8746 -0.6808 -0.8904 30 1 3.5640 -2.8797 2.0302 31 1 4.0775 -4.3339 1.1415 32 1 5.4918 -1.2169 2.8877 33 1 8.1565 -1.5363 3.1935 34 1 8.8294 -3.6895 1.8603 35 1 6.7062 -5.6729 -0.9006 36 1 6.8342 -3.9731 -1.6042 37 1 5.3868 -3.2801 -3.5781 38 1 3.3086 -5.4317 -4.5206 39 1 3.5327 -3.7504 -5.2446 40 1 5.9351 -4.3203 -5.8258 41 1 5.7117 -6.0018 -5.1020 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339584387.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:58 Heat of formation + Delta-G solvation = 23.741031 kcal Electronic energy + Delta-G solvation = -23467.819025 eV Core-core repulsion = 20123.004031 eV Total energy + Delta-G solvation = -3344.814994 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.37179 -41.14004 -38.68845 -36.80259 -35.98716 -34.77441 -33.77593 -31.72947 -30.04437 -26.82171 -26.05364 -24.47963 -23.44851 -22.97492 -22.53868 -21.63291 -21.26630 -19.75151 -19.17704 -18.12859 -18.01398 -17.28476 -16.62686 -16.58022 -16.32309 -15.72155 -15.56876 -15.10509 -14.75698 -14.45533 -14.06752 -13.97386 -13.68760 -13.56179 -13.51568 -13.33090 -13.09534 -12.63970 -12.54370 -12.44147 -12.21485 -12.15517 -12.03899 -11.76895 -11.68582 -10.86118 -10.83166 -10.76569 -10.58534 -10.13786 -9.61249 -9.32033 -8.35760 -6.40173 0.81046 1.29064 1.32519 1.40896 1.66181 1.73801 2.16994 2.27790 2.39083 2.70342 2.98394 3.30354 3.52652 3.72541 3.86413 3.95893 4.03309 4.10987 4.21027 4.30011 4.39085 4.39177 4.46967 4.50606 4.61814 4.76017 4.81125 4.84153 4.91545 4.98733 5.02692 5.07373 5.09670 5.26155 5.26552 5.30599 5.42535 5.50401 5.56999 5.67985 6.21947 6.29562 6.60943 6.63681 7.20499 7.42716 8.80985 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.010288 B = 0.007326 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.871799 B = 3821.249203 C = 5927.486819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.940 3.060 4 H -0.279 1.279 5 H -0.272 1.272 6 H -0.242 1.242 7 C -0.532 4.532 8 H 0.034 0.966 9 C 0.231 3.769 10 N -0.594 5.594 11 C 0.191 3.809 12 C -0.039 4.039 13 C -0.215 4.215 14 C -0.232 4.232 15 C -0.033 4.033 16 O -0.170 6.170 17 C 0.529 3.471 18 O -0.571 6.571 19 C -0.196 4.196 20 H 0.142 0.858 21 C -0.111 4.111 22 C -0.089 4.089 23 H 0.137 0.863 24 C -0.123 4.123 25 C -0.185 4.185 26 C -0.160 4.160 27 H 0.268 0.732 28 H 0.044 0.956 29 H 0.014 0.986 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.140 0.860 33 H 0.164 0.836 34 H 0.242 0.758 35 H 0.137 0.863 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.094 0.906 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.606 -12.003 2.444 22.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.182 4.182 3 Si 0.764 3.236 4 H -0.204 1.204 5 H -0.197 1.197 6 H -0.165 1.165 7 C -0.571 4.571 8 H 0.052 0.948 9 C 0.109 3.891 10 N -0.325 5.325 11 C 0.068 3.932 12 C -0.090 4.090 13 C -0.236 4.236 14 C -0.251 4.251 15 C -0.100 4.100 16 O -0.066 6.066 17 C 0.319 3.681 18 O -0.450 6.450 19 C -0.217 4.217 20 H 0.160 0.840 21 C -0.148 4.148 22 C -0.108 4.108 23 H 0.155 0.845 24 C -0.142 4.142 25 C -0.223 4.223 26 C -0.196 4.196 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.158 0.842 33 H 0.182 0.818 34 H 0.258 0.742 35 H 0.155 0.845 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 18.302 -11.833 1.728 21.862 hybrid contribution -0.657 1.632 0.165 1.767 sum 17.645 -10.201 1.892 20.469 Atomic orbital electron populations 1.70031 1.08028 1.28251 1.51898 1.25751 0.95581 1.02949 0.93968 0.85823 0.79912 0.79019 0.78879 1.20432 1.19737 1.16512 1.21521 0.91273 0.93353 1.50928 0.94791 1.19246 0.92770 0.80339 0.96760 1.47982 1.63936 1.14765 1.05774 1.19962 0.87208 0.99697 0.86292 1.22863 0.90000 0.94260 1.01909 1.21907 0.96766 1.00620 1.04267 1.22101 0.95171 1.01229 1.06596 1.24822 0.91221 0.96312 0.97679 1.84026 1.15461 1.47483 1.59580 1.20415 0.76560 0.88325 0.82834 1.90631 1.53211 1.69192 1.31971 1.22287 1.01843 0.93400 1.04147 0.84019 1.22925 0.88308 1.03439 1.00170 1.21920 1.02582 0.99117 0.87155 0.84539 1.21686 1.04187 0.98505 0.89785 1.22761 0.92460 1.02732 1.04311 1.23066 0.96916 1.02326 0.97325 0.92249 0.93798 0.96816 0.87246 0.86958 0.84168 0.81816 0.74217 0.84529 0.90308 0.90031 0.88594 0.91212 0.88780 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.74 13.96 21.45 0.30 -59.44 16 2 C 0.02 0.95 5.47 84.66 0.46 1.41 16 3 Si 0.94 45.18 27.47 68.60 1.88 47.06 16 4 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 5 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.24 -10.58 6.54 99.48 0.65 -9.93 16 7 C -0.53 -31.41 9.94 25.60 0.25 -31.15 16 8 H 0.03 2.22 8.06 -2.91 -0.02 2.20 16 9 C 0.23 11.47 4.23 85.63 0.36 11.83 16 10 N -0.59 -24.67 2.44 -830.50 -2.03 -26.70 16 11 C 0.19 6.04 5.76 85.63 0.49 6.53 16 12 C -0.04 -1.11 6.90 24.83 0.17 -0.94 16 13 C -0.22 -6.07 10.81 22.19 0.24 -5.83 16 14 C -0.23 -5.14 10.91 22.19 0.24 -4.90 16 15 C -0.03 -0.62 12.09 66.97 0.81 0.19 16 16 O -0.17 -4.10 9.80 -2.52 -0.02 -4.12 16 17 C 0.53 21.91 7.39 87.66 0.65 22.56 16 18 O -0.57 -28.59 12.91 -3.04 -0.04 -28.63 16 19 C -0.20 -5.70 5.04 -11.54 -0.06 -5.76 16 20 H 0.14 3.43 6.87 -2.39 -0.02 3.42 16 21 C -0.11 -2.52 9.11 30.59 0.28 -2.24 16 22 C -0.09 -2.27 5.85 -10.80 -0.06 -2.33 16 23 H 0.14 2.64 8.14 -2.39 -0.02 2.62 16 24 C -0.12 -3.81 4.09 -10.79 -0.04 -3.86 16 25 C -0.19 -5.62 10.25 30.59 0.31 -5.31 16 26 C -0.16 -3.78 10.25 30.60 0.31 -3.47 16 27 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 28 H 0.04 2.04 7.13 -2.39 -0.02 2.03 16 29 H 0.01 0.74 6.85 -2.39 -0.02 0.73 16 30 H 0.11 3.51 8.07 -2.39 -0.02 3.49 16 31 H 0.11 2.90 6.18 -2.39 -0.01 2.88 16 32 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 33 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 34 H 0.24 2.16 8.06 -2.91 -0.02 2.13 16 35 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.08 3.16 6.40 -2.39 -0.02 3.15 16 38 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 40 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -77.24 344.47 5.48 -71.76 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.97 Total: 23.33 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 4.42 Total: -23.25 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -1.73 Total: -86.14 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.06 Total: -32.75 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.88 Total: 47.06 kcal Total: -77.24 5.48 -71.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339584387.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.498 kcal (2) G-P(sol) polarization free energy of solvation -77.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds