Wall clock time and date at job start Tue Mar 31 2020 06:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35896 * 116.99882 * 2 1 4 4 C 1.38751 * 120.06028 * 359.94712 * 3 2 1 5 5 C 1.38120 * 119.94817 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.97237 * 180.29945 * 5 4 3 7 7 C 1.50697 * 112.84850 * 102.27558 * 6 5 4 8 8 O 1.21297 * 120.00070 * 114.27553 * 7 6 5 9 9 N 1.34772 * 120.00241 * 294.27414 * 7 6 5 10 10 C 1.37100 * 120.00486 * 184.87626 * 9 7 6 11 11 H 1.08007 * 119.99295 * 359.97438 * 10 9 7 12 12 C 1.38947 * 120.00437 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99859 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00094 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47152 * 90.00226 * 14 12 10 16 16 H 1.48500 * 109.47368 * 209.99737 * 14 12 10 17 17 H 1.48500 * 109.47241 * 330.00246 * 14 12 10 18 18 C 1.53781 * 113.61257 * 330.97030 * 6 5 4 19 19 C 1.53788 * 87.07709 * 220.02145 * 18 6 5 20 20 C 1.53777 * 87.08198 * 25.43411 * 19 18 6 21 21 C 1.38293 * 120.05576 * 0.02562 * 5 4 3 22 22 C 1.38239 * 120.10844 * 0.02694 * 21 5 4 23 23 C 1.38162 * 120.05905 * 359.95251 * 22 21 5 24 24 C 1.50707 * 120.02921 * 180.02562 * 23 22 21 25 25 H 1.08997 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47642 * 300.00731 * 1 2 3 27 27 H 1.09000 * 109.46596 * 60.00832 * 1 2 3 28 28 H 1.08000 * 120.02305 * 0.05237 * 4 3 2 29 29 H 0.96998 * 120.00059 * 4.87183 * 9 7 6 30 30 H 0.97003 * 119.99779 * 179.97438 * 13 12 10 31 31 H 1.09000 * 113.61082 * 334.56640 * 18 6 5 32 32 H 1.08995 * 113.61612 * 105.47526 * 18 6 5 33 33 H 1.08999 * 113.61138 * 270.88167 * 19 18 6 34 34 H 1.09003 * 113.68697 * 139.99410 * 19 18 6 35 35 H 1.09009 * 113.61052 * 220.02103 * 20 19 18 36 36 H 1.08991 * 113.69551 * 89.13242 * 20 19 18 37 37 H 1.08001 * 119.94116 * 180.02562 * 21 5 4 38 38 H 1.08002 * 119.96868 * 179.97438 * 22 21 5 39 39 H 1.08997 * 109.46811 * 89.99698 * 24 23 22 40 40 H 1.08997 * 109.46850 * 210.00209 * 24 23 22 41 41 H 1.09003 * 109.46899 * 329.99788 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0011 5 6 1.9208 3.6047 -0.0016 6 6 1.1019 4.8699 0.0040 7 6 1.0375 5.5192 1.3624 8 8 1.5493 6.6043 1.5407 9 7 0.4112 4.8942 2.3790 10 6 0.2650 5.5267 3.5866 11 1 0.6522 6.5257 3.7232 12 6 -0.3802 4.8822 4.6349 13 7 -0.8508 3.6666 4.4687 14 14 -0.5786 5.7437 6.2804 15 1 -1.8544 6.5038 6.2906 16 1 -0.5955 4.7339 7.3691 17 1 0.5561 6.6785 6.4898 18 6 -0.2700 4.7186 -0.6743 19 6 -0.0402 6.1164 -1.2730 20 6 1.4665 5.8446 -1.1282 21 6 3.3019 3.6758 -0.0016 22 6 4.0559 2.5171 -0.0016 23 6 3.4311 1.2849 -0.0006 24 6 4.2537 0.0221 0.0000 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8898 27 1 -0.3632 0.5137 -0.8901 28 1 0.2128 2.3203 -0.0011 29 1 0.0638 3.9970 2.2564 30 1 -1.3009 3.2165 5.2007 31 1 -0.3031 3.9243 -1.4200 32 1 -1.1021 4.6760 0.0283 33 1 -0.4005 6.9272 -0.6398 34 1 -0.3697 6.2091 -2.3079 35 1 2.0361 6.7110 -0.7919 36 1 1.9093 5.3584 -1.9973 37 1 3.7922 4.6381 -0.0016 38 1 5.1344 2.5752 -0.0020 39 1 4.4524 -0.2816 1.0278 40 1 3.7062 -0.7684 -0.5132 41 1 5.1976 0.2032 -0.5143 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339921693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:38 Heat of formation + Delta-G solvation = -39.380755 kcal Electronic energy + Delta-G solvation = -23582.393450 eV Core-core repulsion = 20234.841290 eV Total energy + Delta-G solvation = -3347.552160 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.54455 -39.30342 -37.13120 -36.36130 -33.93161 -32.58578 -31.18973 -29.92692 -27.82128 -27.37793 -25.60657 -25.06467 -23.83634 -21.79782 -21.01750 -20.74752 -18.36380 -17.85599 -17.30951 -16.09289 -15.69671 -15.56267 -15.38905 -14.87622 -14.64748 -14.10063 -13.93755 -13.64018 -13.38082 -13.33295 -12.89257 -12.50028 -12.24616 -12.07873 -11.95545 -11.80822 -11.61156 -11.37653 -11.13884 -11.07345 -11.03003 -10.77437 -10.48909 -10.40346 -10.24187 -9.94913 -9.85469 -9.51285 -8.69750 -8.23997 -7.98178 -7.72995 -6.43517 -3.83857 1.57661 1.74345 3.15900 3.25160 3.31268 3.45792 3.80503 4.00585 4.16487 4.75010 4.90003 4.93197 5.06224 5.10006 5.20079 5.22004 5.23760 5.32985 5.39774 5.48085 5.59768 5.67828 5.72137 5.79429 5.85305 5.88973 5.97403 6.02201 6.07515 6.24063 6.31992 6.40416 6.48247 6.53897 6.59517 6.72979 6.83022 6.95783 7.04253 7.53108 7.60608 8.04082 8.58948 9.15107 9.53342 10.03884 10.73896 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013037 B = 0.006011 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.222839 B = 4656.964212 C = 5558.287267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.318 6.318 3 C 0.126 3.874 4 C -0.193 4.193 5 C -0.018 4.018 6 C -0.059 4.059 7 C 0.470 3.530 8 O -0.589 6.589 9 N -0.552 5.552 10 C -0.301 4.301 11 H 0.103 0.897 12 C 0.024 3.976 13 N -0.898 5.898 14 Si 0.929 3.071 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.269 1.269 18 C -0.128 4.128 19 C -0.136 4.136 20 C -0.112 4.112 21 C -0.140 4.140 22 C -0.084 4.084 23 C -0.128 4.128 24 C -0.100 4.100 25 H 0.096 0.904 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.129 0.871 29 H 0.393 0.607 30 H 0.272 0.728 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.959 -7.130 -11.449 13.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.231 6.231 3 C 0.081 3.919 4 C -0.212 4.212 5 C -0.019 4.019 6 C -0.062 4.062 7 C 0.255 3.745 8 O -0.475 6.475 9 N -0.186 5.186 10 C -0.430 4.430 11 H 0.121 0.879 12 C -0.178 4.178 13 N -0.539 5.539 14 Si 0.756 3.244 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.194 1.194 18 C -0.166 4.166 19 C -0.174 4.174 20 C -0.150 4.150 21 C -0.158 4.158 22 C -0.102 4.102 23 C -0.129 4.129 24 C -0.156 4.156 25 H 0.114 0.886 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.147 0.853 29 H 0.226 0.774 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.254 -6.725 -11.164 13.433 hybrid contribution -0.679 -0.085 0.943 1.165 sum 2.574 -6.810 -10.221 12.549 Atomic orbital electron populations 1.23056 0.78532 1.03562 1.01831 1.85999 1.21233 1.26950 1.88934 1.18719 0.91653 0.84008 0.97496 1.21073 1.00121 0.91513 1.08506 1.19338 0.93512 0.92912 0.96109 1.20905 0.96329 0.93442 0.95533 1.18964 0.84268 0.86696 0.84568 1.90502 1.50872 1.22691 1.83406 1.41776 1.49704 1.16850 1.10250 1.19735 1.34563 1.01123 0.87624 0.87889 1.25263 0.96751 0.95815 0.99933 1.69618 1.38284 1.12255 1.33724 0.85868 0.78887 0.78748 0.80870 1.20357 1.20875 1.19366 1.23018 0.96187 0.97839 0.99563 1.22754 0.96743 0.97388 1.00497 1.22781 0.97011 0.99101 0.96079 1.20897 0.93249 0.98510 1.03129 1.20779 0.99436 0.90994 0.99011 1.19158 0.90579 0.95996 1.07169 1.20545 0.98409 0.94687 1.01999 0.88587 0.91972 0.92894 0.85279 0.77381 0.91849 0.89907 0.90795 0.89788 0.91700 0.89841 0.90238 0.85853 0.85700 0.91707 0.91545 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.32 -4.69 9.54 -19.41 -0.19 -4.88 16 3 C 0.13 2.04 6.66 -39.21 -0.26 1.77 16 4 C -0.19 -3.23 8.02 -39.44 -0.32 -3.54 16 5 C -0.02 -0.32 4.81 -104.64 -0.50 -0.83 16 6 C -0.06 -1.10 0.91 -156.00 -0.14 -1.24 16 7 C 0.47 11.38 6.39 -10.99 -0.07 11.31 16 8 O -0.59 -16.17 15.53 5.54 0.09 -16.09 16 9 N -0.55 -14.32 5.28 -10.96 -0.06 -14.38 16 10 C -0.30 -8.48 9.68 -14.93 -0.14 -8.62 16 11 H 0.10 3.03 7.17 -52.48 -0.38 2.65 16 12 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 13 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 14 Si 0.93 21.15 29.55 -169.99 -5.02 16.13 16 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 C -0.13 -2.06 6.20 -25.91 -0.16 -2.22 16 19 C -0.14 -2.11 7.80 -25.92 -0.20 -2.32 16 20 C -0.11 -1.84 6.72 -25.92 -0.17 -2.02 16 21 C -0.14 -2.37 9.38 -39.56 -0.37 -2.74 16 22 C -0.08 -1.26 9.70 -39.61 -0.38 -1.65 16 23 C -0.13 -1.95 5.89 -104.47 -0.62 -2.56 16 24 C -0.10 -1.22 9.79 36.01 0.35 -0.86 16 25 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 27 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 28 H 0.13 2.00 5.29 -52.49 -0.28 1.72 16 29 H 0.39 9.96 7.90 -40.82 -0.32 9.64 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.08 1.13 7.47 -51.93 -0.39 0.75 16 32 H 0.07 1.27 8.10 -51.93 -0.42 0.85 16 33 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.51 7.34 -51.92 -0.38 1.13 16 36 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 37 H 0.12 2.06 8.01 -52.49 -0.42 1.64 16 38 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.79 7.53 -51.93 -0.39 0.40 16 41 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 LS Contribution 340.80 15.07 5.14 5.14 Total: -1.00 -31.48 340.80 -7.28 -38.76 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -5.86 Total: 12.76 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -2.10 Total: -13.67 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.67 Total: -38.15 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.10 Total: -20.97 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.48 -7.28 -38.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339921693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.621 kcal (2) G-P(sol) polarization free energy of solvation -31.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds