Wall clock time and date at job start Tue Mar 31 2020 06:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35896 * 116.99882 * 2 1 4 4 C 1.38751 * 120.06028 * 359.94712 * 3 2 1 5 5 C 1.38120 * 119.94817 * 180.02562 * 4 3 2 6 6 C 1.50706 * 119.97237 * 180.29945 * 5 4 3 7 7 C 1.50697 * 112.84850 * 102.27558 * 6 5 4 8 8 O 1.21297 * 120.00070 * 114.27553 * 7 6 5 9 9 N 1.34772 * 120.00241 * 294.27414 * 7 6 5 10 10 C 1.37100 * 120.00486 * 184.87626 * 9 7 6 11 11 H 1.08007 * 119.99295 * 359.97438 * 10 9 7 12 12 C 1.38947 * 120.00437 * 180.02562 * 10 9 7 13 13 N 1.31410 * 119.99859 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00094 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.47152 * 90.00226 * 14 12 10 16 16 H 1.48500 * 109.47368 * 209.99737 * 14 12 10 17 17 H 1.48500 * 109.47241 * 330.00246 * 14 12 10 18 18 C 1.53781 * 113.61257 * 330.97030 * 6 5 4 19 19 C 1.53788 * 87.07709 * 220.02145 * 18 6 5 20 20 C 1.53777 * 87.08198 * 25.43411 * 19 18 6 21 21 C 1.38293 * 120.05576 * 0.02562 * 5 4 3 22 22 C 1.38239 * 120.10844 * 0.02694 * 21 5 4 23 23 C 1.38162 * 120.05905 * 359.95251 * 22 21 5 24 24 C 1.50707 * 120.02921 * 180.02562 * 23 22 21 25 25 H 1.08997 * 109.47198 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47642 * 300.00731 * 1 2 3 27 27 H 1.09000 * 109.46596 * 60.00832 * 1 2 3 28 28 H 1.08000 * 120.02305 * 0.05237 * 4 3 2 29 29 H 0.96998 * 120.00059 * 4.87183 * 9 7 6 30 30 H 0.97003 * 119.99779 * 179.97438 * 13 12 10 31 31 H 1.09000 * 113.61082 * 334.56640 * 18 6 5 32 32 H 1.08995 * 113.61612 * 105.47526 * 18 6 5 33 33 H 1.08999 * 113.61138 * 270.88167 * 19 18 6 34 34 H 1.09003 * 113.68697 * 139.99410 * 19 18 6 35 35 H 1.09009 * 113.61052 * 220.02103 * 20 19 18 36 36 H 1.08991 * 113.69551 * 89.13242 * 20 19 18 37 37 H 1.08001 * 119.94116 * 180.02562 * 21 5 4 38 38 H 1.08002 * 119.96868 * 179.97438 * 22 21 5 39 39 H 1.08997 * 109.46811 * 89.99698 * 24 23 22 40 40 H 1.08997 * 109.46850 * 210.00209 * 24 23 22 41 41 H 1.09003 * 109.46899 * 329.99788 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 -0.0011 5 6 1.9208 3.6047 -0.0016 6 6 1.1019 4.8699 0.0040 7 6 1.0375 5.5192 1.3624 8 8 1.5493 6.6043 1.5407 9 7 0.4112 4.8942 2.3790 10 6 0.2650 5.5267 3.5866 11 1 0.6522 6.5257 3.7232 12 6 -0.3802 4.8822 4.6349 13 7 -0.8508 3.6666 4.4687 14 14 -0.5786 5.7437 6.2804 15 1 -1.8544 6.5038 6.2906 16 1 -0.5955 4.7339 7.3691 17 1 0.5561 6.6785 6.4898 18 6 -0.2700 4.7186 -0.6743 19 6 -0.0402 6.1164 -1.2730 20 6 1.4665 5.8446 -1.1282 21 6 3.3019 3.6758 -0.0016 22 6 4.0559 2.5171 -0.0016 23 6 3.4311 1.2849 -0.0006 24 6 4.2537 0.0221 0.0000 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8898 27 1 -0.3632 0.5137 -0.8901 28 1 0.2128 2.3203 -0.0011 29 1 0.0638 3.9970 2.2564 30 1 -1.3009 3.2165 5.2007 31 1 -0.3031 3.9243 -1.4200 32 1 -1.1021 4.6760 0.0283 33 1 -0.4005 6.9272 -0.6398 34 1 -0.3697 6.2091 -2.3079 35 1 2.0361 6.7110 -0.7919 36 1 1.9093 5.3584 -1.9973 37 1 3.7922 4.6381 -0.0016 38 1 5.1344 2.5752 -0.0020 39 1 4.4524 -0.2816 1.0278 40 1 3.7062 -0.7684 -0.5132 41 1 5.1976 0.2032 -0.5143 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339921693.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:37 Heat of formation + Delta-G solvation = -58.190785 kcal Electronic energy + Delta-G solvation = -23583.209114 eV Core-core repulsion = 20234.841290 eV Total energy + Delta-G solvation = -3348.367824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.93515 -40.66491 -38.63131 -37.80102 -35.99696 -33.79355 -33.22101 -31.13434 -29.10335 -28.40817 -27.31362 -26.47791 -25.32188 -23.00550 -22.45351 -22.16395 -20.24468 -19.50594 -18.80069 -17.32414 -17.22160 -16.82369 -16.64053 -16.60238 -16.03779 -15.94088 -15.43218 -14.87827 -14.81433 -14.52481 -14.39882 -14.09284 -13.63095 -13.32627 -13.27283 -13.02621 -12.96424 -12.91678 -12.65568 -12.46466 -12.26767 -12.18258 -12.15123 -11.96520 -11.79798 -11.57659 -11.24978 -11.17659 -10.45914 -10.06382 -9.61703 -8.99005 -8.50682 -6.00122 0.32704 0.49572 1.34018 1.38072 1.51160 1.95897 2.25752 2.40421 2.72818 3.11253 3.14634 3.57033 3.65988 3.73456 3.85807 3.96976 4.07515 4.21479 4.33307 4.35204 4.41274 4.51194 4.59862 4.68378 4.75682 4.76591 4.78378 4.81234 4.88180 4.95229 4.98325 5.12217 5.20681 5.30072 5.35647 5.36281 5.50379 5.55256 5.68090 5.85972 5.95564 6.45542 6.53063 7.06255 7.49946 8.04015 8.66394 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.013037 B = 0.006011 C = 0.005036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.222839 B = 4656.964212 C = 5558.287267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.323 6.323 3 C 0.116 3.884 4 C -0.200 4.200 5 C -0.036 4.036 6 C -0.063 4.063 7 C 0.468 3.532 8 O -0.630 6.630 9 N -0.561 5.561 10 C -0.338 4.338 11 H 0.079 0.921 12 C -0.010 4.010 13 N -0.916 5.916 14 Si 0.993 3.007 15 H -0.267 1.267 16 H -0.270 1.270 17 H -0.274 1.274 18 C -0.118 4.118 19 C -0.131 4.131 20 C -0.105 4.105 21 C -0.157 4.157 22 C -0.082 4.082 23 C -0.134 4.134 24 C -0.097 4.097 25 H 0.125 0.875 26 H 0.046 0.954 27 H 0.067 0.933 28 H 0.136 0.864 29 H 0.394 0.606 30 H 0.278 0.722 31 H 0.115 0.885 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.103 0.897 35 H 0.059 0.941 36 H 0.110 0.890 37 H 0.117 0.883 38 H 0.154 0.846 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.006 -8.776 -12.401 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.237 6.237 3 C 0.071 3.929 4 C -0.219 4.219 5 C -0.037 4.037 6 C -0.067 4.067 7 C 0.255 3.745 8 O -0.518 6.518 9 N -0.195 5.195 10 C -0.468 4.468 11 H 0.097 0.903 12 C -0.210 4.210 13 N -0.556 5.556 14 Si 0.816 3.184 15 H -0.192 1.192 16 H -0.194 1.194 17 H -0.198 1.198 18 C -0.155 4.155 19 C -0.168 4.168 20 C -0.143 4.143 21 C -0.175 4.175 22 C -0.099 4.099 23 C -0.134 4.134 24 C -0.153 4.153 25 H 0.143 0.857 26 H 0.065 0.935 27 H 0.086 0.914 28 H 0.153 0.847 29 H 0.227 0.773 30 H 0.088 0.912 31 H 0.134 0.866 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.128 0.872 37 H 0.135 0.865 38 H 0.171 0.829 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.287 -8.393 -12.132 15.114 hybrid contribution -0.668 0.368 1.219 1.438 sum 2.619 -8.025 -10.913 13.797 Atomic orbital electron populations 1.23298 0.77027 1.05510 1.01771 1.85997 1.22793 1.26223 1.88703 1.18945 0.92322 0.84281 0.97328 1.21157 1.00598 0.91435 1.08666 1.19297 0.93799 0.92650 0.97913 1.20791 0.98873 0.94383 0.92620 1.19940 0.82209 0.86097 0.86204 1.90460 1.52068 1.24595 1.84644 1.41825 1.50410 1.16903 1.10349 1.19713 1.36626 1.00943 0.89499 0.90279 1.26059 0.95680 0.96440 1.02813 1.69680 1.38055 1.12978 1.34913 0.84935 0.78852 0.77899 0.76706 1.19245 1.19425 1.19846 1.23041 0.93728 0.99244 0.99517 1.22714 0.95863 0.96100 1.02142 1.22819 0.97577 0.97809 0.96075 1.21024 0.93318 0.99144 1.04051 1.21085 1.00818 0.90241 0.97798 1.19606 0.90743 0.97245 1.05838 1.20594 0.99035 0.93206 1.02507 0.85719 0.93514 0.91439 0.84663 0.77277 0.91203 0.86640 0.92447 0.92482 0.87867 0.92200 0.87172 0.86499 0.82868 0.91482 0.91249 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.81 113.37 1.11 1.51 16 2 O -0.32 -8.98 9.54 -92.38 -0.88 -9.87 16 3 C 0.12 3.60 6.66 22.51 0.15 3.75 16 4 C -0.20 -6.51 8.02 22.36 0.18 -6.33 16 5 C -0.04 -1.27 4.81 -19.88 -0.10 -1.37 16 6 C -0.06 -2.39 0.91 -53.15 -0.05 -2.44 16 7 C 0.47 23.61 6.39 87.66 0.56 24.17 16 8 O -0.63 -36.40 15.53 -3.08 -0.05 -36.44 16 9 N -0.56 -30.29 5.28 -306.98 -1.62 -31.91 16 10 C -0.34 -19.82 9.68 84.04 0.81 -19.01 16 11 H 0.08 4.91 7.17 -2.91 -0.02 4.89 16 12 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 13 N -0.92 -50.21 13.05 21.66 0.28 -49.93 16 14 Si 0.99 43.59 29.55 68.60 2.03 45.62 16 15 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 16 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 18 C -0.12 -3.68 6.20 31.12 0.19 -3.48 16 19 C -0.13 -3.93 7.80 31.12 0.24 -3.69 16 20 C -0.11 -3.41 6.72 31.12 0.21 -3.20 16 21 C -0.16 -5.28 9.38 22.28 0.21 -5.07 16 22 C -0.08 -2.32 9.70 22.25 0.22 -2.11 16 23 C -0.13 -3.80 5.89 -19.77 -0.12 -3.92 16 24 C -0.10 -2.10 9.79 71.24 0.70 -1.41 16 25 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.05 1.15 7.66 -2.39 -0.02 1.13 16 27 H 0.07 1.25 7.66 -2.39 -0.02 1.23 16 28 H 0.14 4.09 5.29 -2.91 -0.02 4.07 16 29 H 0.39 20.69 7.90 -92.71 -0.73 19.95 16 30 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.12 2.86 7.47 -2.39 -0.02 2.84 16 32 H 0.06 1.98 8.10 -2.39 -0.02 1.96 16 33 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 2.22 7.34 -2.38 -0.02 2.21 16 36 H 0.11 2.89 8.09 -2.39 -0.02 2.87 16 37 H 0.12 3.97 8.01 -2.91 -0.02 3.95 16 38 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.07 1.47 7.53 -2.39 -0.02 1.45 16 41 H 0.08 1.43 8.09 -2.39 -0.02 1.41 16 Total: -1.00 -70.11 340.80 4.86 -65.25 By element: Atomic # 1 Polarization: 39.61 SS G_CDS: 0.31 Total: 39.92 kcal Atomic # 6 Polarization: -27.43 SS G_CDS: 4.79 Total: -22.64 kcal Atomic # 7 Polarization: -80.50 SS G_CDS: -1.34 Total: -81.84 kcal Atomic # 8 Polarization: -45.38 SS G_CDS: -0.93 Total: -46.31 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -70.11 4.86 -65.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339921693.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.062 kcal (2) G-P(sol) polarization free energy of solvation -70.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds