Wall clock time and date at job start Tue Mar 31 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38424 * 119.91679 * 2 1 4 4 C 1.38386 * 120.34996 * 180.23434 * 3 2 1 5 5 C 1.37908 * 120.16853 * 359.48269 * 4 3 2 6 6 C 1.50699 * 120.08589 * 180.23390 * 5 4 3 7 7 C 1.39830 * 119.82749 * 0.51442 * 5 4 3 8 8 C 1.47164 * 120.17646 * 179.72149 * 7 5 4 9 9 O 1.21261 * 119.99815 * 354.00360 * 8 7 5 10 10 C 1.50699 * 120.00415 * 174.00018 * 8 7 5 11 11 C 1.52998 * 109.47308 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47364 * 180.02562 * 11 10 8 13 13 O 1.21283 * 119.99676 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00358 * 180.02562 * 12 11 10 15 15 C 1.46499 * 120.00157 * 180.02562 * 14 12 11 16 16 C 1.50698 * 109.47141 * 179.97438 * 15 14 12 17 17 H 1.08005 * 119.99857 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00168 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99763 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00149 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46929 * 60.00320 * 20 18 16 22 22 H 1.48501 * 109.47259 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47334 * 300.00465 * 20 18 16 24 24 C 1.37869 * 119.91049 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.47071 * 89.99796 * 1 2 3 26 26 H 1.08993 * 109.47570 * 210.00424 * 1 2 3 27 27 H 1.08999 * 109.46899 * 330.00373 * 1 2 3 28 28 H 1.08001 * 119.82784 * 359.95331 * 3 2 1 29 29 H 1.07998 * 119.91557 * 179.74114 * 4 3 2 30 30 H 1.09008 * 109.46962 * 263.64117 * 6 5 4 31 31 H 1.08997 * 109.47440 * 23.64029 * 6 5 4 32 32 H 1.08997 * 109.47140 * 143.64445 * 6 5 4 33 33 H 1.09000 * 109.47424 * 300.00375 * 10 8 7 34 34 H 1.09003 * 109.46570 * 60.00481 * 10 8 7 35 35 H 1.09000 * 109.47159 * 300.00507 * 11 10 8 36 36 H 1.09000 * 109.47231 * 59.99962 * 11 10 8 37 37 H 0.97005 * 119.99696 * 359.97438 * 14 12 11 38 38 H 1.09000 * 109.47017 * 299.99433 * 15 14 12 39 39 H 1.08995 * 109.47208 * 59.99283 * 15 14 12 40 40 H 0.97003 * 119.99945 * 179.97438 * 19 18 16 41 41 H 1.08004 * 120.08679 * 0.02562 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1998 0.0000 4 6 3.5812 1.2103 -0.0049 5 6 4.2833 0.0233 0.0010 6 6 5.7902 0.0369 0.0010 7 6 3.5933 -1.1929 0.0010 8 6 4.3347 -2.4641 0.0010 9 8 5.5424 -2.4616 -0.1087 10 6 3.5933 -3.7690 0.1374 11 6 4.5915 -4.9282 0.1089 12 6 3.8500 -6.2331 0.2447 13 8 2.6420 -6.2357 0.3531 14 7 4.5292 -7.3972 0.2456 15 6 3.8083 -8.6658 0.3771 16 6 4.7915 -9.8075 0.3491 17 1 5.8478 -9.6081 0.2443 18 6 4.3427 -11.1066 0.4583 19 7 3.0566 -11.3493 0.5874 20 14 5.5613 -12.5219 0.4229 21 1 6.5200 -12.3778 1.5478 22 1 4.8306 -13.8078 0.5562 23 1 6.3021 -12.5052 -0.8640 24 6 2.1945 -1.1951 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6532 2.1327 -0.0008 29 1 4.1127 2.1504 -0.0091 30 1 6.1546 -0.0787 -1.0199 31 1 6.1451 0.9835 0.4084 32 1 6.1610 -0.7844 0.6142 33 1 3.0499 -3.7811 1.0822 34 1 2.8894 -3.8748 -0.6880 35 1 5.1353 -4.9162 -0.8357 36 1 5.2952 -4.8221 0.9345 37 1 5.4953 -7.3951 0.1586 38 1 3.2636 -8.6780 1.3212 39 1 3.1055 -8.7716 -0.4492 40 1 2.7408 -12.2633 0.6638 41 1 1.6544 -2.1304 0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343898530.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:47 Heat of formation + Delta-G solvation = -93.416227 kcal Electronic energy + Delta-G solvation = -21584.804206 eV Core-core repulsion = 18234.908892 eV Total energy + Delta-G solvation = -3349.895314 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.72 seconds Orbital eigenvalues (eV) -41.44975 -40.46125 -39.32689 -36.18686 -34.78494 -34.36835 -33.98362 -32.27631 -30.19555 -29.49081 -27.08962 -25.82325 -24.79520 -23.98406 -21.97935 -21.17421 -20.40287 -18.98036 -17.85548 -17.12420 -17.06872 -16.93185 -16.70193 -16.47740 -15.95649 -15.92014 -15.24968 -14.92611 -14.84340 -14.35392 -14.31986 -13.97583 -13.94607 -13.76148 -13.50544 -13.27572 -13.05289 -12.86360 -12.73374 -12.68709 -12.52594 -12.46282 -12.24044 -12.16017 -11.97352 -11.51827 -10.79948 -10.79277 -10.46161 -9.94779 -9.83033 -9.45879 -8.29837 -6.46348 -0.31927 0.37739 1.40247 1.42613 1.46573 1.54756 1.75040 2.30000 2.50321 2.76117 3.04841 3.09826 3.64846 3.81181 3.87536 4.06330 4.10347 4.11053 4.23396 4.28676 4.51355 4.63467 4.68776 4.75496 4.79477 4.83967 4.85421 4.87393 4.95863 5.04881 5.11386 5.17309 5.24201 5.30250 5.36305 5.48160 5.58099 5.61101 5.68546 5.84543 5.97932 6.49660 6.64337 6.88991 7.22598 7.46957 8.82129 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030914 B = 0.002576 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.517261 B =10867.591721 C =11732.888414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.114 4.114 3 C -0.083 4.083 4 C -0.136 4.136 5 C -0.047 4.047 6 C -0.119 4.119 7 C -0.189 4.189 8 C 0.403 3.597 9 O -0.469 6.469 10 C -0.145 4.145 11 C -0.117 4.117 12 C 0.496 3.504 13 O -0.599 6.599 14 N -0.710 5.710 15 C 0.265 3.735 16 C -0.559 4.559 17 H 0.082 0.918 18 C 0.004 3.996 19 N -0.930 5.930 20 Si 0.984 3.016 21 H -0.263 1.263 22 H -0.284 1.284 23 H -0.263 1.263 24 C -0.078 4.078 25 H 0.078 0.922 26 H 0.068 0.932 27 H 0.082 0.918 28 H 0.154 0.846 29 H 0.151 0.849 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.408 0.592 38 H -0.011 1.011 39 H -0.011 1.011 40 H 0.269 0.731 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.164 27.512 -1.550 27.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.114 4.114 3 C -0.101 4.101 4 C -0.154 4.154 5 C -0.048 4.048 6 C -0.175 4.175 7 C -0.190 4.190 8 C 0.284 3.716 9 O -0.347 6.347 10 C -0.182 4.182 11 C -0.156 4.156 12 C 0.284 3.716 13 O -0.481 6.481 14 N -0.359 5.359 15 C 0.142 3.858 16 C -0.596 4.596 17 H 0.100 0.900 18 C -0.196 4.196 19 N -0.569 5.569 20 Si 0.807 3.193 21 H -0.187 1.187 22 H -0.210 1.210 23 H -0.187 1.187 24 C -0.096 4.096 25 H 0.097 0.903 26 H 0.087 0.913 27 H 0.101 0.899 28 H 0.171 0.829 29 H 0.168 0.832 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.244 0.756 38 H 0.007 0.993 39 H 0.007 0.993 40 H 0.078 0.922 41 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.819 27.340 -1.509 27.394 hybrid contribution 0.408 -1.194 -0.003 1.262 sum 1.227 26.146 -1.512 26.218 Atomic orbital electron populations 1.20848 0.89181 1.03827 1.03231 1.20212 0.97694 0.92750 1.00725 1.21653 0.94167 0.98581 0.95679 1.21340 0.94584 0.97857 1.01621 1.20435 0.97105 0.92360 0.94860 1.21035 0.90116 1.03362 1.02990 1.20353 0.94822 0.94171 1.09606 1.22513 0.88349 0.90232 0.70552 1.90466 1.16870 1.89672 1.37655 1.21719 0.99187 0.91231 1.06108 1.21389 0.98682 0.89179 1.06380 1.21360 0.87842 0.86733 0.75642 1.90625 1.16387 1.88533 1.52553 1.46255 1.11457 1.06216 1.72004 1.18551 0.92316 0.80821 0.94067 1.21603 0.94332 0.91302 1.52413 0.89992 1.26057 0.97432 1.02232 0.93836 1.70124 1.15635 1.21769 1.49343 0.85216 0.78024 0.76589 0.79451 1.18714 1.20967 1.18725 1.21581 0.92508 0.99406 0.96112 0.90335 0.91346 0.89872 0.82858 0.83166 0.91045 0.90282 0.90768 0.87568 0.87444 0.87177 0.87166 0.75641 0.99297 0.99294 0.92202 0.84467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.28 10.01 71.24 0.71 -0.56 16 2 C -0.11 -1.79 5.87 -19.91 -0.12 -1.90 16 3 C -0.08 -1.11 9.69 22.35 0.22 -0.89 16 4 C -0.14 -2.03 9.66 22.23 0.21 -1.82 16 5 C -0.05 -0.93 5.92 -19.56 -0.12 -1.05 16 6 C -0.12 -2.21 8.73 71.24 0.62 -1.59 16 7 C -0.19 -4.14 5.87 -20.15 -0.12 -4.26 16 8 C 0.40 9.82 7.05 28.03 0.20 10.01 16 9 O -0.47 -12.84 12.98 -2.97 -0.04 -12.87 16 10 C -0.14 -3.66 3.69 29.85 0.11 -3.55 16 11 C -0.12 -3.27 4.99 29.85 0.15 -3.12 16 12 C 0.50 19.76 7.83 87.66 0.69 20.45 16 13 O -0.60 -28.68 15.98 -3.04 -0.05 -28.73 16 14 N -0.71 -30.52 5.55 -466.80 -2.59 -33.11 16 15 C 0.27 14.71 5.43 85.63 0.46 15.17 16 16 C -0.56 -30.78 9.28 25.60 0.24 -30.54 16 17 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 18 C 0.00 0.23 5.46 84.65 0.46 0.69 16 19 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 20 Si 0.98 42.67 29.54 68.60 2.03 44.70 16 21 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 24 C -0.08 -1.50 9.12 22.58 0.21 -1.30 16 25 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16 27 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 28 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 29 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 30 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.08 1.08 8.04 -2.39 -0.02 1.06 16 32 H 0.07 1.66 5.86 -2.39 -0.01 1.65 16 33 H 0.11 2.69 8.10 -2.39 -0.02 2.67 16 34 H 0.11 2.69 7.86 -2.39 -0.02 2.67 16 35 H 0.11 2.79 8.10 -2.39 -0.02 2.77 16 36 H 0.11 2.79 8.10 -2.39 -0.02 2.77 16 37 H 0.41 14.73 8.32 -92.70 -0.77 13.95 16 38 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 40 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 41 H 0.14 2.49 6.99 -2.91 -0.02 2.47 16 Total: -1.00 -72.67 349.37 3.83 -68.84 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: 0.26 Total: 21.53 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: 3.93 Total: -4.27 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -2.30 Total: -89.20 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.09 Total: -41.61 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -72.67 3.83 -68.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343898530.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.571 kcal (2) G-P(sol) polarization free energy of solvation -72.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.72 seconds