Wall clock time and date at job start Tue Mar 31 2020 07:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.44549 * 2 1 4 4 C 1.53042 * 109.46313 * 119.96522 * 2 1 3 5 5 C 1.53191 * 109.31322 * 181.38503 * 4 2 1 6 6 N 1.46920 * 108.77691 * 305.36769 * 5 4 2 7 7 S 1.65601 * 120.63005 * 233.58549 * 6 5 4 8 8 O 1.42096 * 104.27550 * 333.93010 * 7 6 5 9 9 O 1.42097 * 104.27967 * 206.06853 * 7 6 5 10 10 C 1.81409 * 104.44942 * 89.99895 * 7 6 5 11 11 C 1.52999 * 109.46814 * 180.02562 * 10 7 6 12 12 C 1.53006 * 109.46623 * 179.97438 * 11 10 7 13 13 C 1.50699 * 109.46866 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47141 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47494 * 119.99680 * 17 15 13 20 20 H 1.48505 * 109.47047 * 239.99860 * 17 15 13 21 21 C 1.46929 * 118.74062 * 53.85460 * 6 5 4 22 22 C 1.53039 * 109.46005 * 240.03380 * 2 1 3 23 23 H 1.08999 * 109.47180 * 300.03059 * 1 2 3 24 24 H 1.08996 * 109.47925 * 60.03425 * 1 2 3 25 25 H 1.09007 * 109.47020 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46792 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46992 * 299.96556 * 3 2 1 28 28 H 1.09001 * 109.47449 * 59.97014 * 3 2 1 29 29 H 1.09004 * 109.49670 * 61.42922 * 4 2 1 30 30 H 1.09000 * 109.49259 * 301.33929 * 4 2 1 31 31 H 1.08998 * 109.58339 * 185.57584 * 5 4 2 32 32 H 1.09004 * 109.70261 * 65.22347 * 5 4 2 33 33 H 1.09000 * 109.47067 * 60.00006 * 10 7 6 34 34 H 1.09001 * 109.46593 * 300.00012 * 10 7 6 35 35 H 1.09000 * 109.47486 * 60.00033 * 11 10 7 36 36 H 1.09001 * 109.47362 * 299.99310 * 11 10 7 37 37 H 1.08993 * 109.46955 * 300.00075 * 12 11 10 38 38 H 1.09000 * 109.47050 * 59.99904 * 12 11 10 39 39 H 0.96992 * 120.00032 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.58224 * 65.93233 * 21 6 5 41 41 H 1.08998 * 109.58544 * 186.35454 * 21 6 5 42 42 H 1.09002 * 109.49668 * 298.56679 * 22 2 1 43 43 H 1.09010 * 109.49557 * 58.62958 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0393 1.4427 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0679 -1.2487 0.0000 7 16 5.1667 -2.4877 -0.0001 8 8 5.8521 -2.3481 1.2368 9 8 5.8518 -2.3485 -1.2372 10 6 4.1527 -3.9919 0.0003 11 6 5.0638 -5.2210 0.0009 12 6 4.2086 -6.4897 0.0019 13 6 5.1060 -7.7004 0.0019 14 1 6.1790 -7.5773 0.0008 15 6 4.5573 -8.9653 0.0021 16 7 3.2507 -9.1153 0.0029 17 14 5.6696 -10.4660 0.0028 18 1 7.0892 -10.0299 0.0024 19 1 5.4018 -11.2801 1.2155 20 1 5.4022 -11.2809 -1.2095 21 6 3.5755 -0.6848 -1.2643 22 6 2.0398 -0.7207 -1.2501 23 1 -0.3633 0.5143 0.8897 24 1 -0.3635 0.5133 -0.8902 25 1 -0.3633 -1.0277 0.0005 26 1 3.1293 1.4432 0.0005 27 1 1.6763 1.9562 -0.8903 28 1 1.6754 1.9566 0.8897 29 1 1.6978 -1.7556 1.2384 30 1 1.6572 -0.2206 2.1398 31 1 3.9417 -1.2844 2.0984 32 1 3.9164 0.3402 1.3685 33 1 3.5234 -4.0061 -0.8896 34 1 3.5237 -4.0058 0.8904 35 1 5.6929 -5.2066 0.8910 36 1 5.6931 -5.2073 -0.8890 37 1 3.5796 -6.5032 0.8919 38 1 3.5793 -6.5044 -0.8880 39 1 2.8647 -10.0051 0.0034 40 1 3.9188 0.3451 -1.3632 41 1 3.9486 -1.2782 -2.0990 42 1 1.6978 -1.7556 -1.2383 43 1 1.6567 -0.2210 -2.1399 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345130082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:17 Heat of formation + Delta-G solvation = -102.337321 kcal Electronic energy + Delta-G solvation = -22082.340007 eV Core-core repulsion = 18867.501797 eV Total energy + Delta-G solvation = -3214.838210 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.61227 -36.94894 -35.74728 -34.67873 -34.50600 -32.17826 -31.30253 -28.01764 -27.79547 -27.55422 -23.77997 -23.60282 -22.73898 -20.60307 -19.39064 -18.25444 -17.42725 -16.60519 -16.16759 -15.74336 -15.09943 -14.79423 -14.70156 -14.54507 -14.43940 -14.32252 -14.07648 -12.91011 -12.62568 -12.46008 -12.29899 -12.28178 -12.10615 -12.07231 -11.89666 -11.76546 -11.69266 -11.39843 -11.37652 -11.27380 -11.06778 -10.93550 -10.82356 -10.50219 -10.47941 -10.36484 -9.95179 -9.46996 -9.19567 -8.85559 -8.41167 -6.05887 -4.08831 0.46476 2.75887 3.29314 3.36830 3.41910 4.03129 4.29004 4.40371 4.43360 4.47030 4.52830 4.77618 4.93937 5.13998 5.16133 5.18980 5.20706 5.30709 5.34559 5.37775 5.44021 5.47084 5.55890 5.63209 5.64876 5.69777 5.82320 5.85717 5.91334 5.98901 6.04008 6.14559 6.25307 6.26716 6.46233 6.54434 6.87801 7.57215 7.67026 7.92381 8.32971 8.97688 9.55977 11.05392 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024561 B = 0.003764 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.733423 B = 7438.070397 C = 8044.006996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.064 4.064 3 C -0.147 4.147 4 C -0.127 4.127 5 C 0.120 3.880 6 N -1.003 6.003 7 S 2.598 3.402 8 O -0.961 6.961 9 O -0.961 6.961 10 C -0.608 4.608 11 C -0.106 4.106 12 C 0.031 3.969 13 C -0.525 4.525 14 H 0.059 0.941 15 C 0.057 3.943 16 N -0.895 5.895 17 Si 0.894 3.106 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.120 3.880 22 C -0.127 4.127 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.261 0.739 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.881 21.330 -0.007 22.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.064 4.064 3 C -0.204 4.204 4 C -0.166 4.166 5 C -0.005 4.005 6 N -0.840 5.840 7 S 2.695 3.305 8 O -0.951 6.951 9 O -0.951 6.951 10 C -0.740 4.740 11 C -0.145 4.145 12 C -0.008 4.008 13 C -0.564 4.564 14 H 0.077 0.923 15 C -0.144 4.144 16 N -0.535 5.535 17 Si 0.722 3.278 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.005 4.005 22 C -0.166 4.166 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.054 21.352 -0.006 21.942 hybrid contribution -0.318 -1.211 0.001 1.252 sum -5.372 20.141 -0.006 20.845 Atomic orbital electron populations 1.21872 0.94467 1.01940 1.01595 1.20475 0.95303 0.95426 0.95175 1.21989 1.01623 0.95187 1.01574 1.22029 0.95417 1.01443 0.97728 1.21422 0.93953 1.00076 0.85077 1.57863 1.63430 1.51091 1.11582 1.05458 0.75206 0.75724 0.74120 1.93554 1.70797 1.85465 1.45326 1.93554 1.70813 1.85473 1.45303 1.30599 1.14624 1.17703 1.11064 1.21499 0.97506 0.93648 1.01869 1.19063 0.94687 0.89321 0.97694 1.21299 0.93291 0.90903 1.50871 0.92321 1.25021 0.95057 0.99205 0.95109 1.69969 1.10008 1.22736 1.50742 0.86502 0.80986 0.82731 0.77616 1.19587 1.20936 1.20943 1.21520 0.93937 1.00011 0.85080 1.22104 0.95383 1.01428 0.97696 0.92714 0.92717 0.92495 0.91947 0.92759 0.92759 0.91089 0.90788 0.89145 0.91051 0.85570 0.85575 0.91657 0.91656 0.96147 0.96152 0.92967 0.91012 0.89106 0.91076 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 8.47 37.16 0.31 -0.69 16 2 C -0.06 -0.49 0.77 -154.47 -0.12 -0.61 16 3 C -0.15 -1.03 7.71 37.16 0.29 -0.74 16 4 C -0.13 -1.07 4.91 -26.61 -0.13 -1.20 16 5 C 0.12 1.19 5.84 -3.71 -0.02 1.17 16 6 N -1.00 -11.63 3.21 -113.28 -0.36 -12.00 16 7 S 2.60 39.48 5.41 -107.50 -0.58 38.90 16 8 O -0.96 -17.12 16.72 -57.54 -0.96 -18.08 16 9 O -0.96 -17.11 16.71 -57.54 -0.96 -18.07 16 10 C -0.61 -9.56 6.18 37.16 0.23 -9.33 16 11 C -0.11 -2.18 5.16 -26.73 -0.14 -2.31 16 12 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 13 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 14 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.12 1.19 5.87 -3.49 -0.02 1.17 16 22 C -0.13 -1.07 4.92 -26.39 -0.13 -1.20 16 23 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 26 H 0.06 0.47 4.97 -51.93 -0.26 0.21 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.94 7.10 -51.93 -0.37 0.57 16 32 H 0.07 0.63 6.70 -51.93 -0.35 0.29 16 33 H 0.13 1.79 8.14 -51.92 -0.42 1.36 16 34 H 0.13 1.78 8.14 -51.92 -0.42 1.36 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.07 0.64 6.69 -51.93 -0.35 0.29 16 41 H 0.09 0.94 7.09 -51.93 -0.37 0.57 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -33.87 346.31 -9.79 -43.65 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -7.57 Total: -3.59 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: -0.28 Total: -26.76 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.37 Total: -37.91 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -1.92 Total: -36.15 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: 39.48 SS G_CDS: -0.58 Total: 38.90 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.87 -9.79 -43.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345130082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.686 kcal (2) G-P(sol) polarization free energy of solvation -33.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds