Wall clock time and date at job start Tue Mar 31 2020 07:08:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.44549 * 2 1 4 4 C 1.53042 * 109.46313 * 119.96522 * 2 1 3 5 5 C 1.53191 * 109.31322 * 181.38503 * 4 2 1 6 6 N 1.46920 * 108.77691 * 305.36769 * 5 4 2 7 7 S 1.65601 * 120.63005 * 233.58549 * 6 5 4 8 8 O 1.42096 * 104.27550 * 333.93010 * 7 6 5 9 9 O 1.42097 * 104.27967 * 206.06853 * 7 6 5 10 10 C 1.81409 * 104.44942 * 89.99895 * 7 6 5 11 11 C 1.52999 * 109.46814 * 180.02562 * 10 7 6 12 12 C 1.53006 * 109.46623 * 179.97438 * 11 10 7 13 13 C 1.50699 * 109.46866 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 11 16 16 N 1.31522 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 180.02562 * 15 13 12 18 18 H 1.48508 * 109.47141 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47494 * 119.99680 * 17 15 13 20 20 H 1.48505 * 109.47047 * 239.99860 * 17 15 13 21 21 C 1.46929 * 118.74062 * 53.85460 * 6 5 4 22 22 C 1.53039 * 109.46005 * 240.03380 * 2 1 3 23 23 H 1.08999 * 109.47180 * 300.03059 * 1 2 3 24 24 H 1.08996 * 109.47925 * 60.03425 * 1 2 3 25 25 H 1.09007 * 109.47020 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.46792 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.46992 * 299.96556 * 3 2 1 28 28 H 1.09001 * 109.47449 * 59.97014 * 3 2 1 29 29 H 1.09004 * 109.49670 * 61.42922 * 4 2 1 30 30 H 1.09000 * 109.49259 * 301.33929 * 4 2 1 31 31 H 1.08998 * 109.58339 * 185.57584 * 5 4 2 32 32 H 1.09004 * 109.70261 * 65.22347 * 5 4 2 33 33 H 1.09000 * 109.47067 * 60.00006 * 10 7 6 34 34 H 1.09001 * 109.46593 * 300.00012 * 10 7 6 35 35 H 1.09000 * 109.47486 * 60.00033 * 11 10 7 36 36 H 1.09001 * 109.47362 * 299.99310 * 11 10 7 37 37 H 1.08993 * 109.46955 * 300.00075 * 12 11 10 38 38 H 1.09000 * 109.47050 * 59.99904 * 12 11 10 39 39 H 0.96992 * 120.00032 * 180.02562 * 16 15 13 40 40 H 1.09002 * 109.58224 * 65.93233 * 21 6 5 41 41 H 1.08998 * 109.58544 * 186.35454 * 21 6 5 42 42 H 1.09002 * 109.49668 * 298.56679 * 22 2 1 43 43 H 1.09010 * 109.49557 * 58.62958 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0393 1.4427 0.0000 4 6 2.0399 -0.7207 1.2501 5 6 3.5714 -0.6885 1.2642 6 7 4.0679 -1.2487 0.0000 7 16 5.1667 -2.4877 -0.0001 8 8 5.8521 -2.3481 1.2368 9 8 5.8518 -2.3485 -1.2372 10 6 4.1527 -3.9919 0.0003 11 6 5.0638 -5.2210 0.0009 12 6 4.2086 -6.4897 0.0019 13 6 5.1060 -7.7004 0.0019 14 1 6.1790 -7.5773 0.0008 15 6 4.5573 -8.9653 0.0021 16 7 3.2507 -9.1153 0.0029 17 14 5.6696 -10.4660 0.0028 18 1 7.0892 -10.0299 0.0024 19 1 5.4018 -11.2801 1.2155 20 1 5.4022 -11.2809 -1.2095 21 6 3.5755 -0.6848 -1.2643 22 6 2.0398 -0.7207 -1.2501 23 1 -0.3633 0.5143 0.8897 24 1 -0.3635 0.5133 -0.8902 25 1 -0.3633 -1.0277 0.0005 26 1 3.1293 1.4432 0.0005 27 1 1.6763 1.9562 -0.8903 28 1 1.6754 1.9566 0.8897 29 1 1.6978 -1.7556 1.2384 30 1 1.6572 -0.2206 2.1398 31 1 3.9417 -1.2844 2.0984 32 1 3.9164 0.3402 1.3685 33 1 3.5234 -4.0061 -0.8896 34 1 3.5237 -4.0058 0.8904 35 1 5.6929 -5.2066 0.8910 36 1 5.6931 -5.2073 -0.8890 37 1 3.5796 -6.5032 0.8919 38 1 3.5793 -6.5044 -0.8880 39 1 2.8647 -10.0051 0.0034 40 1 3.9188 0.3451 -1.3632 41 1 3.9486 -1.2782 -2.0990 42 1 1.6978 -1.7556 -1.2383 43 1 1.6567 -0.2210 -2.1399 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345130082.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:16 Heat of formation + Delta-G solvation = -124.287930 kcal Electronic energy + Delta-G solvation = -22083.291857 eV Core-core repulsion = 18867.501797 eV Total energy + Delta-G solvation = -3215.790060 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.32115 -38.28040 -37.08538 -36.48973 -35.32165 -34.17778 -32.04206 -29.67555 -28.71945 -28.10177 -25.65729 -24.34164 -23.61038 -22.31894 -20.39234 -19.27647 -18.67349 -18.30557 -17.34785 -17.19326 -16.49377 -16.08747 -15.73423 -15.43213 -15.32416 -15.22736 -15.03956 -14.51863 -14.09130 -13.73718 -13.55737 -13.44344 -13.22428 -13.05852 -13.01208 -12.79331 -12.76532 -12.71182 -12.62138 -12.61856 -12.20972 -12.13249 -12.06141 -11.78330 -11.77768 -11.37669 -11.20166 -11.12831 -11.00070 -10.59488 -9.83964 -8.24125 -6.35369 -0.77736 1.38962 1.39530 1.53019 1.66447 2.38901 2.78652 3.09320 3.12167 3.58545 3.79400 3.79666 3.88893 3.89522 4.12328 4.24159 4.36364 4.44318 4.49792 4.61307 4.65065 4.70974 4.83463 4.88750 4.90154 4.92644 4.97750 5.01782 5.04468 5.13117 5.17979 5.26891 5.31426 5.42540 5.43262 5.52784 5.60049 5.64879 5.69519 5.77542 6.17942 6.80176 7.34172 8.87621 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024561 B = 0.003764 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.733423 B = 7438.070397 C = 8044.006996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C -0.144 4.144 4 C -0.126 4.126 5 C 0.112 3.888 6 N -0.995 5.995 7 S 2.622 3.378 8 O -0.987 6.987 9 O -0.987 6.987 10 C -0.608 4.608 11 C -0.106 4.106 12 C 0.032 3.968 13 C -0.553 4.553 14 H 0.060 0.940 15 C 0.003 3.997 16 N -0.930 5.930 17 Si 0.964 3.036 18 H -0.264 1.264 19 H -0.276 1.276 20 H -0.276 1.276 21 C 0.112 3.888 22 C -0.126 4.126 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.090 0.910 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.002 0.998 38 H 0.002 0.998 39 H 0.265 0.735 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.135 22.454 -0.006 23.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.064 4.064 3 C -0.201 4.201 4 C -0.165 4.165 5 C -0.012 4.012 6 N -0.834 5.834 7 S 2.719 3.281 8 O -0.977 6.977 9 O -0.977 6.977 10 C -0.739 4.739 11 C -0.145 4.145 12 C -0.006 4.006 13 C -0.591 4.591 14 H 0.078 0.922 15 C -0.195 4.195 16 N -0.570 5.570 17 Si 0.788 3.212 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.202 1.202 21 C -0.012 4.012 22 C -0.165 4.165 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.108 0.892 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.159 0.841 34 H 0.159 0.841 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.021 0.979 38 H 0.021 0.979 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.082 0.918 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.306 22.473 -0.005 23.090 hybrid contribution -0.299 -1.486 0.000 1.516 sum -5.605 20.987 -0.005 21.722 Atomic orbital electron populations 1.21841 0.93837 1.01657 1.02269 1.20491 0.95761 0.95789 0.94348 1.21964 1.01247 0.94584 1.02330 1.22046 0.94106 1.01439 0.98935 1.21658 0.95121 1.00563 0.83866 1.57587 1.63044 1.49615 1.13117 1.04500 0.75106 0.75673 0.72845 1.93515 1.71945 1.85889 1.46387 1.93515 1.71960 1.85896 1.46361 1.30565 1.14375 1.16271 1.12666 1.21312 0.97614 0.93640 1.01920 1.18955 0.94595 0.91238 0.95852 1.21763 0.93837 0.92395 1.51066 0.92212 1.25939 0.96582 1.02491 0.94504 1.70078 1.11760 1.23743 1.51381 0.85415 0.79144 0.78653 0.77959 1.18802 1.20143 1.20152 1.21757 0.95107 1.00501 0.83866 1.22121 0.94069 1.01423 0.98904 0.92058 0.92065 0.93259 0.92449 0.92050 0.92050 0.91823 0.89160 0.89768 0.89537 0.84073 0.84079 0.91674 0.91673 0.97926 0.97936 0.92605 0.89491 0.89733 0.91812 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.47 71.98 0.61 -1.05 16 2 C -0.06 -0.84 0.77 -52.15 -0.04 -0.88 16 3 C -0.14 -1.62 7.71 71.98 0.56 -1.07 16 4 C -0.13 -1.87 4.91 30.67 0.15 -1.72 16 5 C 0.11 2.05 5.84 86.36 0.50 2.55 16 6 N -0.99 -21.81 3.21 -512.30 -1.65 -23.45 16 7 S 2.62 78.47 5.41 -56.49 -0.31 78.17 16 8 O -0.99 -34.81 16.72 -127.65 -2.13 -36.94 16 9 O -0.99 -34.80 16.71 -127.65 -2.13 -36.93 16 10 C -0.61 -19.02 6.18 71.98 0.44 -18.57 16 11 C -0.11 -4.41 5.16 30.60 0.16 -4.25 16 12 C 0.03 1.67 4.97 29.85 0.15 1.82 16 13 C -0.55 -31.80 9.11 25.60 0.23 -31.56 16 14 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 15 C 0.00 0.18 5.46 84.65 0.46 0.64 16 16 N -0.93 -55.99 13.29 21.45 0.28 -55.70 16 17 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 18 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 C 0.11 2.05 5.87 86.50 0.51 2.55 16 22 C -0.13 -1.87 4.92 30.81 0.15 -1.72 16 23 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 24 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.05 0.66 8.14 -2.38 -0.02 0.65 16 26 H 0.06 0.71 4.97 -2.39 -0.01 0.70 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.08 1.66 7.10 -2.39 -0.02 1.64 16 32 H 0.09 1.35 6.70 -2.39 -0.02 1.33 16 33 H 0.14 3.95 8.14 -2.39 -0.02 3.93 16 34 H 0.14 3.94 8.14 -2.39 -0.02 3.92 16 35 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 38 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 40 H 0.09 1.35 6.69 -2.39 -0.02 1.34 16 41 H 0.08 1.66 7.09 -2.39 -0.02 1.65 16 42 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 43 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -72.17 346.31 0.93 -71.24 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: 0.96 Total: 10.42 kcal Atomic # 6 Polarization: -57.14 SS G_CDS: 3.89 Total: -53.26 kcal Atomic # 7 Polarization: -77.79 SS G_CDS: -1.36 Total: -79.16 kcal Atomic # 8 Polarization: -69.60 SS G_CDS: -4.27 Total: -73.87 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: 78.47 SS G_CDS: -0.31 Total: 78.17 kcal Total: -72.17 0.93 -71.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345130082.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.048 kcal (2) G-P(sol) polarization free energy of solvation -72.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds