Wall clock time and date at job start Tue Mar 31 2020 06:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35891 * 117.00158 * 2 1 4 4 C 1.38761 * 120.05748 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.94607 * 179.97438 * 4 3 2 6 6 C 1.38290 * 120.05673 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.94610 * 179.97438 * 6 5 4 8 8 C 1.38254 * 120.11013 * 359.74190 * 6 5 4 9 9 C 1.38160 * 120.05094 * 0.51048 * 8 6 5 10 10 C 1.50706 * 120.02611 * 179.76902 * 9 8 6 11 11 C 1.50696 * 109.47242 * 264.72628 * 10 9 8 12 12 O 1.21296 * 119.99811 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00097 * 179.72374 * 11 10 9 14 14 C 1.37108 * 119.99787 * 180.27481 * 13 11 10 15 15 H 1.08000 * 119.99507 * 224.28462 * 14 13 11 16 16 C 1.38941 * 119.99942 * 44.28695 * 14 13 11 17 17 N 1.31408 * 120.00343 * 18.20751 * 16 14 13 18 18 Si 1.86804 * 119.99881 * 198.20980 * 16 14 13 19 19 H 1.48497 * 109.47097 * 59.99591 * 18 16 14 20 20 H 1.48492 * 109.47542 * 180.02562 * 18 16 14 21 21 H 1.48509 * 109.46774 * 300.00125 * 18 16 14 22 22 C 1.46500 * 120.00118 * 0.27313 * 13 11 10 23 23 C 1.52994 * 117.50029 * 183.22666 * 22 13 11 24 24 C 1.53000 * 117.49947 * 114.60066 * 22 13 11 25 25 H 1.09004 * 109.46789 * 59.99981 * 1 2 3 26 26 H 1.09000 * 109.47435 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47144 * 300.00378 * 1 2 3 28 28 H 1.08002 * 120.02141 * 0.02562 * 4 3 2 29 29 H 1.07995 * 119.97357 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.47109 * 89.99550 * 7 6 5 31 31 H 1.09002 * 109.47147 * 209.99285 * 7 6 5 32 32 H 1.08997 * 109.47216 * 330.00012 * 7 6 5 33 33 H 1.07998 * 119.96921 * 180.25928 * 8 6 5 34 34 H 1.08997 * 109.47296 * 144.72626 * 10 9 8 35 35 H 1.09001 * 109.47000 * 24.72249 * 10 9 8 36 36 H 0.97003 * 120.00010 * 174.92404 * 17 16 14 37 37 H 1.08996 * 115.54535 * 328.93801 * 22 13 11 38 38 H 1.09005 * 117.49627 * 0.02562 * 23 22 13 39 39 H 1.09004 * 117.49770 * 145.01996 * 23 22 13 40 40 H 1.08994 * 117.49964 * 214.97606 * 24 22 13 41 41 H 1.09004 * 117.49523 * 359.97438 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3020 3.6757 0.0005 7 6 3.9862 5.0184 0.0005 8 6 4.0561 2.5169 0.0049 9 6 3.4311 1.2848 -0.0009 10 6 4.2537 0.0220 -0.0015 11 6 4.4237 -0.4662 -1.4170 12 8 3.9254 0.1504 -2.3351 13 7 5.1336 -1.5851 -1.6633 14 6 5.2929 -2.0261 -2.9517 15 1 5.1740 -3.0745 -3.1822 16 6 5.6074 -1.1242 -3.9608 17 7 6.0986 0.0562 -3.6574 18 14 5.3318 -1.5897 -5.7488 19 1 3.8930 -1.8852 -5.9672 20 1 5.7444 -0.4627 -6.6231 21 1 6.1394 -2.7919 -6.0774 22 6 5.7349 -2.3300 -0.5544 23 6 6.5914 -3.5485 -0.9042 24 6 5.2068 -3.7399 -0.2819 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 0.2128 2.3203 0.0014 29 1 1.3341 4.5113 0.0019 30 1 4.1515 5.3420 1.0282 31 1 4.9440 4.9381 -0.5136 32 1 3.3580 5.7463 -0.5129 33 1 5.1345 2.5751 0.0087 34 1 3.7469 -0.7420 0.5879 35 1 5.2326 0.2259 0.4325 36 1 6.3869 0.6573 -4.3622 37 1 6.0378 -1.7313 0.3045 38 1 6.7079 -3.7957 -1.9595 39 1 7.4583 -3.7516 -0.2753 40 1 5.1629 -4.0689 0.7563 41 1 4.4117 -4.1130 -0.9274 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346536411.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:06 Heat of formation + Delta-G solvation = -9.918582 kcal Electronic energy + Delta-G solvation = -23564.412135 eV Core-core repulsion = 20218.137551 eV Total energy + Delta-G solvation = -3346.274584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.94988 -38.31919 -37.26398 -35.92535 -33.04651 -32.26354 -31.24665 -30.72147 -27.64091 -27.46496 -25.56155 -24.52573 -21.80453 -21.59588 -21.11087 -20.51400 -18.94338 -17.57801 -16.30340 -16.08446 -15.91574 -15.30903 -14.84174 -14.52916 -14.12045 -14.00273 -13.75621 -13.63188 -13.38721 -13.11187 -12.70456 -12.62395 -11.99058 -11.90315 -11.64052 -11.58112 -11.39244 -11.02950 -10.88522 -10.83291 -10.75307 -10.52094 -10.40483 -10.30854 -10.10668 -9.87045 -9.64772 -8.64181 -8.41559 -7.85278 -7.52005 -6.89386 -6.01188 -3.75415 1.77024 1.85137 3.35143 3.42183 3.45999 3.66543 4.11065 4.28739 4.38354 4.87494 4.98534 5.07740 5.17459 5.24857 5.28397 5.36573 5.40889 5.55835 5.64103 5.66671 5.70817 5.78502 5.83736 5.84606 5.87680 6.02750 6.12423 6.16346 6.25857 6.29671 6.30027 6.47878 6.60759 6.69543 6.84763 6.88153 7.00537 7.02726 7.24024 7.70801 7.81595 8.38657 9.18546 9.30711 9.79071 10.45522 11.08133 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.014093 B = 0.005922 C = 0.005296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.355989 B = 4727.198058 C = 5285.363065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.307 6.307 3 C 0.135 3.865 4 C -0.209 4.209 5 C -0.093 4.093 6 C -0.127 4.127 7 C -0.105 4.105 8 C -0.068 4.068 9 C -0.067 4.067 10 C -0.092 4.092 11 C 0.495 3.505 12 O -0.524 6.524 13 N -0.433 5.433 14 C -0.346 4.346 15 H 0.074 0.926 16 C 0.074 3.926 17 N -0.834 5.834 18 Si 0.910 3.090 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.279 1.279 22 C 0.077 3.923 23 C -0.175 4.175 24 C -0.208 4.208 25 H 0.052 0.948 26 H 0.095 0.905 27 H 0.049 0.951 28 H 0.121 0.879 29 H 0.116 0.884 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.263 0.737 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.809 3.165 10.705 12.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.220 6.220 3 C 0.090 3.910 4 C -0.228 4.228 5 C -0.111 4.111 6 C -0.128 4.128 7 C -0.161 4.161 8 C -0.086 4.086 9 C -0.068 4.068 10 C -0.133 4.133 11 C 0.282 3.718 12 O -0.401 6.401 13 N -0.155 5.155 14 C -0.473 4.473 15 H 0.092 0.908 16 C -0.136 4.136 17 N -0.467 5.467 18 Si 0.738 3.262 19 H -0.201 1.201 20 H -0.213 1.213 21 H -0.205 1.205 22 C -0.029 4.029 23 C -0.213 4.213 24 C -0.247 4.247 25 H 0.070 0.930 26 H 0.113 0.887 27 H 0.067 0.933 28 H 0.139 0.861 29 H 0.134 0.866 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.143 0.857 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.984 3.533 10.118 12.275 hybrid contribution -0.271 -0.122 -0.924 0.970 sum -6.255 3.412 9.195 11.632 Atomic orbital electron populations 1.22965 0.79360 1.03452 1.00706 1.86124 1.20476 1.26909 1.88526 1.18744 0.91760 0.83983 0.96504 1.21047 0.99356 0.92425 1.09947 1.20619 0.93846 0.96544 1.00116 1.19686 0.93564 0.95238 1.04274 1.20663 1.00405 0.93595 1.01470 1.20714 0.99592 0.90553 0.97770 1.18812 0.90234 0.95215 1.02541 1.20550 0.99120 0.94844 0.98752 1.19565 0.80735 0.82956 0.88531 1.90531 1.48699 1.55079 1.45748 1.42746 1.45123 1.23646 1.03962 1.18745 1.52143 0.94127 0.82287 0.90843 1.25201 0.93930 0.95147 0.99329 1.69810 1.35451 1.08125 1.33356 0.86317 0.78864 0.77471 0.83572 1.20100 1.21291 1.20459 1.21670 1.00430 0.87327 0.93472 1.23050 0.92952 1.02916 1.02335 1.23298 0.98063 1.03030 1.00333 0.92967 0.88655 0.93268 0.86078 0.86564 0.91938 0.91682 0.92151 0.85716 0.89579 0.90144 0.92738 0.88140 0.87573 0.89928 0.89909 0.89204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.31 -5.69 9.63 -19.40 -0.19 -5.88 16 3 C 0.14 2.58 6.66 -39.21 -0.26 2.32 16 4 C -0.21 -3.40 9.04 -39.43 -0.36 -3.76 16 5 C -0.09 -1.43 9.69 -39.61 -0.38 -1.82 16 6 C -0.13 -2.07 5.88 -104.60 -0.62 -2.68 16 7 C -0.10 -1.33 10.01 36.00 0.36 -0.97 16 8 C -0.07 -1.26 9.33 -39.60 -0.37 -1.63 16 9 C -0.07 -1.35 4.39 -104.47 -0.46 -1.81 16 10 C -0.09 -1.92 4.17 -29.03 -0.12 -2.04 16 11 C 0.50 13.03 6.96 -10.99 -0.08 12.95 16 12 O -0.52 -16.01 13.80 5.54 0.08 -15.93 16 13 N -0.43 -11.19 2.83 -107.73 -0.31 -11.49 16 14 C -0.35 -9.72 7.92 -14.93 -0.12 -9.83 16 15 H 0.07 2.00 7.26 -52.49 -0.38 1.62 16 16 C 0.07 2.14 4.39 -17.47 -0.08 2.07 16 17 N -0.83 -25.23 11.74 55.49 0.65 -24.58 16 18 Si 0.91 22.63 29.59 -169.99 -5.03 17.60 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.08 1.60 5.88 -67.93 -0.40 1.20 16 23 C -0.17 -3.25 9.80 -26.73 -0.26 -3.51 16 24 C -0.21 -3.69 10.36 -26.73 -0.28 -3.97 16 25 H 0.05 0.67 7.66 -51.93 -0.40 0.27 16 26 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.05 0.52 7.66 -51.93 -0.40 0.13 16 28 H 0.12 1.62 6.30 -52.49 -0.33 1.29 16 29 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.84 8.09 -51.93 -0.42 0.42 16 32 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 34 H 0.09 1.66 7.66 -51.93 -0.40 1.26 16 35 H 0.08 1.52 7.47 -51.93 -0.39 1.13 16 36 H 0.26 7.66 8.32 -40.82 -0.34 7.32 16 37 H 0.10 1.85 6.95 -51.93 -0.36 1.49 16 38 H 0.11 2.19 6.72 -51.93 -0.35 1.84 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 41 H 0.09 1.72 8.14 -51.93 -0.42 1.29 16 LS Contribution 342.19 15.07 5.16 5.16 Total: -1.00 -35.00 342.19 -8.00 -43.00 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.94 Total: 4.22 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -2.42 Total: -12.09 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.35 Total: -36.07 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -0.11 Total: -21.80 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.03 Total: 17.60 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.00 -8.00 -43.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346536411.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.081 kcal (2) G-P(sol) polarization free energy of solvation -35.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds