Wall clock time and date at job start Tue Mar 31 2020 06:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47065 * 2 1 4 4 N 1.46499 * 109.47083 * 60.00189 * 3 2 1 5 5 S 1.65593 * 119.99833 * 165.00158 * 4 3 2 6 6 O 1.42104 * 104.27905 * 308.92754 * 5 4 3 7 7 O 1.42102 * 104.27718 * 181.06534 * 5 4 3 8 8 C 1.81399 * 104.45079 * 64.99683 * 5 4 3 9 9 C 1.53005 * 109.47445 * 179.97438 * 8 5 4 10 10 C 1.50696 * 109.47353 * 179.97438 * 9 8 5 11 11 H 1.08000 * 120.00290 * 0.02562 * 10 9 8 12 12 C 1.37870 * 119.99993 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00415 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00139 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47176 * 89.99933 * 14 12 10 16 16 H 1.48504 * 109.47386 * 210.00135 * 14 12 10 17 17 H 1.48504 * 109.46946 * 329.99954 * 14 12 10 18 18 C 1.52996 * 109.47049 * 119.99940 * 2 1 3 19 19 C 1.52995 * 109.47393 * 59.99924 * 18 2 1 20 20 C 1.53005 * 109.47115 * 60.00163 * 19 18 2 21 21 C 1.53008 * 109.46845 * 299.99845 * 20 19 18 22 22 C 1.52995 * 109.47161 * 239.99713 * 2 1 3 23 23 H 1.08993 * 109.47080 * 59.99951 * 1 2 3 24 24 H 1.08995 * 109.46877 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47072 * 299.99950 * 1 2 3 26 26 H 1.08996 * 109.46521 * 299.99715 * 3 2 1 27 27 H 1.09000 * 109.47048 * 180.02562 * 3 2 1 28 28 H 0.97001 * 119.99882 * 344.99630 * 4 3 2 29 29 H 1.09001 * 109.47190 * 299.99797 * 8 5 4 30 30 H 1.09004 * 109.47089 * 59.99930 * 8 5 4 31 31 H 1.09001 * 109.46962 * 300.00183 * 9 8 5 32 32 H 1.09004 * 109.46832 * 60.00020 * 9 8 5 33 33 H 0.96999 * 120.00929 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.46991 * 179.97438 * 18 2 1 35 35 H 1.09000 * 109.47352 * 299.99439 * 18 2 1 36 36 H 1.09000 * 109.47068 * 299.99972 * 19 18 2 37 37 H 1.09003 * 109.47569 * 179.97438 * 19 18 2 38 38 H 1.09003 * 109.47178 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.47308 * 59.99956 * 20 19 18 40 40 H 1.09000 * 109.47258 * 300.00142 * 21 20 19 41 41 H 1.08996 * 109.46760 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.46803 * 60.00292 * 22 2 1 43 43 H 1.09000 * 109.47236 * 179.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5517 2.1331 1.1962 5 16 2.2318 3.5707 1.6579 6 8 3.6282 3.3078 1.6765 7 8 1.5364 3.9216 2.8464 8 6 1.8181 4.7189 0.3158 9 6 2.3978 6.0998 0.6291 10 6 2.0546 7.0534 -0.4861 11 1 1.4801 6.7093 -1.3334 12 6 2.4740 8.3654 -0.4248 13 7 2.1742 9.1978 -1.3978 14 14 3.4683 8.9606 1.0403 15 1 4.9154 8.7708 0.7665 16 1 3.1932 10.4013 1.2729 17 1 3.0865 8.1828 2.2465 18 6 2.0400 -0.7212 1.2492 19 6 1.5300 -2.1637 1.2493 20 6 2.0401 -2.8850 0.0001 21 6 1.5300 -2.1638 -1.2492 22 6 2.0400 -0.7213 -1.2492 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 3.1300 1.4426 -0.0005 28 1 0.8300 1.7483 1.7177 29 1 2.2396 4.3512 -0.6198 30 1 0.7346 4.7928 0.2220 31 1 1.9759 6.4672 1.5646 32 1 3.4812 6.0261 0.7232 33 1 2.4695 10.1208 -1.3549 34 1 3.1300 -0.7216 1.2490 35 1 1.6768 -0.2074 2.1392 36 1 0.4400 -2.1637 1.2493 37 1 1.8937 -2.6777 2.1391 38 1 1.6764 -3.9126 -0.0001 39 1 3.1301 -2.8850 0.0001 40 1 0.4400 -2.1638 -1.2492 41 1 1.8930 -2.6779 -2.1391 42 1 1.6767 -0.2074 -2.1392 43 1 3.1300 -0.7209 -1.2494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349872735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:08 Heat of formation + Delta-G solvation = -109.618048 kcal Electronic energy + Delta-G solvation = -21932.043686 eV Core-core repulsion = 18716.889760 eV Total energy + Delta-G solvation = -3215.153926 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 3.13 seconds Orbital eigenvalues (eV) -39.91140 -36.68508 -35.57803 -35.27221 -33.94079 -31.68349 -31.47678 -30.94481 -27.32526 -25.96260 -25.52525 -22.86427 -21.34966 -21.24687 -19.02086 -18.60071 -17.65654 -16.99356 -16.25498 -15.58290 -15.36395 -14.98007 -14.77558 -14.64671 -14.32252 -14.19504 -13.57430 -13.20832 -13.12660 -12.80219 -12.69934 -12.34672 -11.94414 -11.89390 -11.79747 -11.69375 -11.59518 -11.45233 -11.25192 -11.23255 -11.20517 -11.17471 -10.44884 -10.42024 -10.26337 -10.23113 -10.12998 -9.77710 -9.47264 -9.11322 -8.66045 -6.16354 -4.17583 0.70471 3.07256 3.26961 3.34262 3.38688 4.14077 4.33977 4.36210 4.39000 4.48186 4.65864 4.82646 4.94767 4.99059 5.10789 5.14844 5.15626 5.30118 5.32134 5.41568 5.43540 5.50838 5.55704 5.58475 5.66846 5.72974 5.79702 5.83250 5.88849 5.91703 5.95289 6.04575 6.09117 6.22408 6.29700 6.31582 6.82673 6.93729 7.08298 7.55313 8.36850 8.84737 9.43425 10.96050 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031519 B = 0.003678 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.138808 B = 7610.830762 C = 8024.417265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.064 4.064 3 C 0.123 3.877 4 N -1.124 6.124 5 S 2.591 3.409 6 O -0.967 6.967 7 O -0.969 6.969 8 C -0.583 4.583 9 C -0.007 4.007 10 C -0.519 4.519 11 H 0.078 0.922 12 C 0.071 3.929 13 N -0.896 5.896 14 Si 0.870 3.130 15 H -0.271 1.271 16 H -0.282 1.282 17 H -0.262 1.262 18 C -0.111 4.111 19 C -0.122 4.122 20 C -0.120 4.120 21 C -0.119 4.119 22 C -0.110 4.110 23 H 0.058 0.942 24 H 0.063 0.937 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.412 0.588 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.032 0.968 32 H 0.028 0.972 33 H 0.266 0.734 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.060 0.940 42 H 0.067 0.933 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.697 -23.770 1.639 23.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.066 4.066 3 C -0.004 4.004 4 N -0.883 5.883 5 S 2.688 3.312 6 O -0.957 6.957 7 O -0.959 6.959 8 C -0.716 4.716 9 C -0.047 4.047 10 C -0.558 4.558 11 H 0.096 0.904 12 C -0.131 4.131 13 N -0.534 5.534 14 Si 0.696 3.304 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.186 1.186 18 C -0.148 4.148 19 C -0.159 4.159 20 C -0.157 4.157 21 C -0.157 4.157 22 C -0.148 4.148 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.098 0.902 28 H 0.247 0.753 29 H 0.142 0.858 30 H 0.145 0.855 31 H 0.050 0.950 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.026 -23.390 2.290 23.589 hybrid contribution -0.135 0.433 0.201 0.496 sum -2.161 -22.957 2.490 23.193 Atomic orbital electron populations 1.21995 0.94263 1.02079 1.02119 1.20693 0.96175 0.93611 0.96079 1.21378 0.99636 0.92499 0.86871 1.55732 1.52905 1.40538 1.39076 1.05525 0.74479 0.74445 0.76737 1.93544 1.31564 1.83406 1.87170 1.93556 1.74832 1.83177 1.44376 1.30292 1.11339 1.12881 1.17099 1.19408 0.96224 0.89562 0.99467 1.20852 1.36028 0.93601 1.05339 0.90436 1.24987 0.95501 0.96596 0.96047 1.69879 1.46003 1.05264 1.32268 0.86920 0.81156 0.78520 0.83819 1.19665 1.20768 1.18612 1.21597 1.01036 0.94978 0.97214 1.21592 1.00938 0.95708 0.97670 1.21544 1.00825 0.98573 0.94798 1.21555 1.01004 0.95445 0.97685 1.21564 1.00989 0.95406 0.96850 0.92245 0.91827 0.92537 0.91530 0.90174 0.75342 0.85782 0.85545 0.94960 0.95386 0.92385 0.91567 0.91633 0.91724 0.92224 0.92377 0.92036 0.91669 0.92120 0.91474 0.91499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 7.61 37.16 0.28 -0.87 16 2 C -0.06 -0.55 0.53 -154.51 -0.08 -0.63 16 3 C 0.12 1.30 5.02 -4.04 -0.02 1.28 16 4 N -1.12 -13.59 5.22 -10.61 -0.06 -13.65 16 5 S 2.59 43.41 5.46 -107.50 -0.59 42.82 16 6 O -0.97 -18.82 17.50 -57.54 -1.01 -19.83 16 7 O -0.97 -19.01 18.08 -57.54 -1.04 -20.05 16 8 C -0.58 -10.57 6.01 37.16 0.22 -10.35 16 9 C -0.01 -0.17 4.05 -27.88 -0.11 -0.29 16 10 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 11 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 12 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 13 N -0.90 -27.13 13.96 55.43 0.77 -26.36 16 14 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 15 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 17 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 18 C -0.11 -0.98 4.56 -26.74 -0.12 -1.11 16 19 C -0.12 -0.90 5.65 -26.73 -0.15 -1.06 16 20 C -0.12 -0.83 5.92 -26.72 -0.16 -0.98 16 21 C -0.12 -0.81 5.65 -26.73 -0.15 -0.96 16 22 C -0.11 -0.85 4.73 -26.73 -0.13 -0.97 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.44 4.81 -51.93 -0.25 0.20 16 25 H 0.06 0.44 6.60 -51.93 -0.34 0.10 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 0.90 7.70 -51.93 -0.40 0.50 16 28 H 0.41 4.28 6.44 -34.47 -0.22 4.06 16 29 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 30 H 0.13 2.09 8.14 -51.92 -0.42 1.67 16 31 H 0.03 0.77 7.20 -51.93 -0.37 0.39 16 32 H 0.03 0.66 7.57 -51.93 -0.39 0.26 16 33 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.61 7.19 -51.93 -0.37 0.24 16 36 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.43 6.43 -51.93 -0.33 0.10 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 339.53 15.07 5.12 5.12 Total: -1.00 -34.00 339.53 -9.58 -43.57 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.26 Total: 0.31 kcal Atomic # 6 Polarization: -27.99 SS G_CDS: -0.85 Total: -28.84 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 0.72 Total: -40.00 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -2.05 Total: -39.87 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: 43.41 SS G_CDS: -0.59 Total: 42.82 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -34.00 -9.58 -43.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349872735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.044 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.13 seconds