Wall clock time and date at job start Tue Mar 31 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47065 * 2 1 4 4 N 1.46499 * 109.47083 * 60.00189 * 3 2 1 5 5 S 1.65593 * 119.99833 * 165.00158 * 4 3 2 6 6 O 1.42104 * 104.27905 * 308.92754 * 5 4 3 7 7 O 1.42102 * 104.27718 * 181.06534 * 5 4 3 8 8 C 1.81399 * 104.45079 * 64.99683 * 5 4 3 9 9 C 1.53005 * 109.47445 * 179.97438 * 8 5 4 10 10 C 1.50696 * 109.47353 * 179.97438 * 9 8 5 11 11 H 1.08000 * 120.00290 * 0.02562 * 10 9 8 12 12 C 1.37870 * 119.99993 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00415 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 120.00139 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47176 * 89.99933 * 14 12 10 16 16 H 1.48504 * 109.47386 * 210.00135 * 14 12 10 17 17 H 1.48504 * 109.46946 * 329.99954 * 14 12 10 18 18 C 1.52996 * 109.47049 * 119.99940 * 2 1 3 19 19 C 1.52995 * 109.47393 * 59.99924 * 18 2 1 20 20 C 1.53005 * 109.47115 * 60.00163 * 19 18 2 21 21 C 1.53008 * 109.46845 * 299.99845 * 20 19 18 22 22 C 1.52995 * 109.47161 * 239.99713 * 2 1 3 23 23 H 1.08993 * 109.47080 * 59.99951 * 1 2 3 24 24 H 1.08995 * 109.46877 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47072 * 299.99950 * 1 2 3 26 26 H 1.08996 * 109.46521 * 299.99715 * 3 2 1 27 27 H 1.09000 * 109.47048 * 180.02562 * 3 2 1 28 28 H 0.97001 * 119.99882 * 344.99630 * 4 3 2 29 29 H 1.09001 * 109.47190 * 299.99797 * 8 5 4 30 30 H 1.09004 * 109.47089 * 59.99930 * 8 5 4 31 31 H 1.09001 * 109.46962 * 300.00183 * 9 8 5 32 32 H 1.09004 * 109.46832 * 60.00020 * 9 8 5 33 33 H 0.96999 * 120.00929 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.46991 * 179.97438 * 18 2 1 35 35 H 1.09000 * 109.47352 * 299.99439 * 18 2 1 36 36 H 1.09000 * 109.47068 * 299.99972 * 19 18 2 37 37 H 1.09003 * 109.47569 * 179.97438 * 19 18 2 38 38 H 1.09003 * 109.47178 * 180.02562 * 20 19 18 39 39 H 1.09000 * 109.47308 * 59.99956 * 20 19 18 40 40 H 1.09000 * 109.47258 * 300.00142 * 21 20 19 41 41 H 1.08996 * 109.46760 * 180.02562 * 21 20 19 42 42 H 1.09003 * 109.46803 * 60.00292 * 22 2 1 43 43 H 1.09000 * 109.47236 * 179.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5517 2.1331 1.1962 5 16 2.2318 3.5707 1.6579 6 8 3.6282 3.3078 1.6765 7 8 1.5364 3.9216 2.8464 8 6 1.8181 4.7189 0.3158 9 6 2.3978 6.0998 0.6291 10 6 2.0546 7.0534 -0.4861 11 1 1.4801 6.7093 -1.3334 12 6 2.4740 8.3654 -0.4248 13 7 2.1742 9.1978 -1.3978 14 14 3.4683 8.9606 1.0403 15 1 4.9154 8.7708 0.7665 16 1 3.1932 10.4013 1.2729 17 1 3.0865 8.1828 2.2465 18 6 2.0400 -0.7212 1.2492 19 6 1.5300 -2.1637 1.2493 20 6 2.0401 -2.8850 0.0001 21 6 1.5300 -2.1638 -1.2492 22 6 2.0400 -0.7213 -1.2492 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 3.1300 1.4426 -0.0005 28 1 0.8300 1.7483 1.7177 29 1 2.2396 4.3512 -0.6198 30 1 0.7346 4.7928 0.2220 31 1 1.9759 6.4672 1.5646 32 1 3.4812 6.0261 0.7232 33 1 2.4695 10.1208 -1.3549 34 1 3.1300 -0.7216 1.2490 35 1 1.6768 -0.2074 2.1392 36 1 0.4400 -2.1637 1.2493 37 1 1.8937 -2.6777 2.1391 38 1 1.6764 -3.9126 -0.0001 39 1 3.1301 -2.8850 0.0001 40 1 0.4400 -2.1638 -1.2492 41 1 1.8930 -2.6779 -2.1391 42 1 1.6767 -0.2074 -2.1392 43 1 3.1300 -0.7209 -1.2494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349872735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:06 Heat of formation + Delta-G solvation = -133.151701 kcal Electronic energy + Delta-G solvation = -21933.064181 eV Core-core repulsion = 18716.889760 eV Total energy + Delta-G solvation = -3216.174422 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -40.57992 -38.15321 -37.02855 -36.16213 -35.88892 -33.46704 -32.43484 -31.56233 -27.97195 -27.87401 -26.33015 -23.52567 -23.11262 -21.96042 -20.32549 -19.41446 -19.23773 -18.48683 -17.45764 -17.03675 -16.39535 -16.33246 -15.76031 -15.71509 -15.33567 -15.20117 -14.87483 -14.80442 -13.93039 -13.84216 -13.79464 -13.40940 -13.22414 -13.14530 -13.06528 -12.97974 -12.93595 -12.85746 -12.40837 -12.26627 -12.19705 -11.94914 -11.85313 -11.83009 -11.70197 -11.29769 -11.01264 -10.92740 -10.84323 -10.82085 -10.28079 -8.36518 -6.42180 -0.68144 1.32129 1.33984 1.44147 1.84542 2.29664 2.77712 2.97533 3.26498 3.65188 3.77850 3.83845 3.92103 4.10173 4.21056 4.28966 4.37170 4.46724 4.55752 4.57823 4.59931 4.70245 4.74024 4.82071 4.86223 4.97345 5.07783 5.09763 5.14158 5.15312 5.22366 5.24569 5.32959 5.34877 5.42176 5.47730 5.49190 5.58020 5.72071 6.14317 6.16994 6.63977 7.22316 8.79027 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.031519 B = 0.003678 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.138808 B = 7610.830762 C = 8024.417265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.059 4.059 3 C 0.111 3.889 4 N -1.105 6.105 5 S 2.623 3.377 6 O -0.992 6.992 7 O -0.996 6.996 8 C -0.588 4.588 9 C -0.018 4.018 10 C -0.527 4.527 11 H 0.050 0.950 12 C 0.013 3.987 13 N -0.940 5.940 14 Si 0.925 3.075 15 H -0.260 1.260 16 H -0.274 1.274 17 H -0.250 1.250 18 C -0.114 4.114 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.117 4.117 22 C -0.111 4.111 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.055 0.945 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.423 0.577 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.270 0.730 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.860 -25.487 2.231 25.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.061 4.061 3 C -0.015 4.015 4 N -0.868 5.868 5 S 2.719 3.281 6 O -0.982 6.982 7 O -0.986 6.986 8 C -0.720 4.720 9 C -0.057 4.057 10 C -0.566 4.566 11 H 0.068 0.932 12 C -0.185 4.185 13 N -0.580 5.580 14 Si 0.748 3.252 15 H -0.185 1.185 16 H -0.199 1.199 17 H -0.174 1.174 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.149 4.149 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.099 0.901 27 H 0.091 0.909 28 H 0.261 0.739 29 H 0.158 0.842 30 H 0.159 0.841 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.198 -25.110 2.882 25.370 hybrid contribution -0.127 0.872 -0.059 0.883 sum -2.324 -24.238 2.823 24.512 Atomic orbital electron populations 1.22018 0.93401 1.02897 1.02237 1.20667 0.96798 0.92140 0.96456 1.21671 0.99490 0.93923 0.86428 1.55284 1.53049 1.38621 1.39854 1.04352 0.73625 0.74652 0.75495 1.93513 1.33431 1.83941 1.87299 1.93515 1.75245 1.84124 1.45730 1.30287 1.12172 1.10576 1.18953 1.19377 0.96764 0.91764 0.97804 1.21184 1.35065 0.94609 1.05728 0.93187 1.25872 0.96818 0.96985 0.98858 1.70005 1.47746 1.05835 1.34425 0.86022 0.80046 0.78438 0.80708 1.18510 1.19934 1.17359 1.21626 1.00417 0.96077 0.97086 1.21576 1.01295 0.94688 0.98090 1.21546 1.00547 0.99062 0.94548 1.21546 1.01302 0.94695 0.97894 1.21580 1.00783 0.96062 0.96466 0.91967 0.90730 0.92581 0.90059 0.90883 0.73947 0.84153 0.84121 0.95047 0.95073 0.92123 0.92659 0.92284 0.91040 0.92106 0.91422 0.92554 0.91108 0.91460 0.90958 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 7.61 71.98 0.55 -1.41 16 2 C -0.06 -0.90 0.53 -52.18 -0.03 -0.93 16 3 C 0.11 2.15 5.02 86.38 0.43 2.58 16 4 N -1.11 -24.78 5.22 -187.49 -0.98 -25.76 16 5 S 2.62 84.27 5.46 -56.49 -0.31 83.96 16 6 O -0.99 -37.45 17.50 -127.65 -2.23 -39.68 16 7 O -1.00 -37.73 18.08 -127.65 -2.31 -40.04 16 8 C -0.59 -20.64 6.01 71.98 0.43 -20.21 16 9 C -0.02 -0.84 4.05 29.85 0.12 -0.72 16 10 C -0.53 -29.73 9.66 25.60 0.25 -29.49 16 11 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 12 C 0.01 0.76 5.47 84.65 0.46 1.23 16 13 N -0.94 -57.85 13.96 21.44 0.30 -57.55 16 14 Si 0.93 43.96 27.47 68.60 1.88 45.84 16 15 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 17 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 18 C -0.11 -1.86 4.56 30.59 0.14 -1.72 16 19 C -0.12 -1.54 5.65 30.59 0.17 -1.37 16 20 C -0.12 -1.40 5.92 30.60 0.18 -1.22 16 21 C -0.12 -1.32 5.65 30.60 0.17 -1.15 16 22 C -0.11 -1.49 4.73 30.59 0.14 -1.34 16 23 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 24 H 0.07 0.83 4.81 -2.39 -0.01 0.82 16 25 H 0.06 0.74 6.60 -2.39 -0.02 0.73 16 26 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.07 1.55 7.70 -2.39 -0.02 1.53 16 28 H 0.42 7.94 6.44 -96.75 -0.62 7.32 16 29 H 0.14 4.39 8.14 -2.39 -0.02 4.37 16 30 H 0.14 4.48 8.14 -2.39 -0.02 4.46 16 31 H 0.03 1.46 7.20 -2.39 -0.02 1.45 16 32 H 0.03 1.43 7.57 -2.38 -0.02 1.41 16 33 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 34 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.06 1.02 7.19 -2.39 -0.02 1.00 16 36 H 0.07 0.83 6.43 -2.39 -0.02 0.82 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.73 6.43 -2.39 -0.02 0.72 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -72.40 339.53 -0.31 -72.71 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 0.31 Total: 16.28 kcal Atomic # 6 Polarization: -58.79 SS G_CDS: 3.03 Total: -55.76 kcal Atomic # 7 Polarization: -82.63 SS G_CDS: -0.68 Total: -83.31 kcal Atomic # 8 Polarization: -75.18 SS G_CDS: -4.54 Total: -79.72 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.84 kcal Atomic # 16 Polarization: 84.27 SS G_CDS: -0.31 Total: 83.96 kcal Total: -72.40 -0.31 -72.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349872735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.442 kcal (2) G-P(sol) polarization free energy of solvation -72.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds