Wall clock time and date at job start Tue Mar 31 2020 07:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 110.45659 * 2 1 4 4 N 1.46495 * 109.47529 * 302.60548 * 3 2 1 5 5 C 1.34774 * 120.00065 * 180.02562 * 4 3 2 6 6 O 1.21538 * 120.00484 * 359.97438 * 5 4 3 7 7 C 1.47894 * 119.99781 * 180.02562 * 5 4 3 8 8 C 1.39919 * 120.02635 * 359.97438 * 7 5 4 9 9 C 1.38321 * 120.35975 * 180.02562 * 8 7 5 10 10 C 1.37756 * 120.41067 * 359.97438 * 9 8 7 11 11 C 1.40741 * 120.04254 * 0.02562 * 10 9 8 12 12 C 1.41444 * 120.18255 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00216 * 155.03256 * 12 11 10 14 14 C 1.39935 * 119.99413 * 335.03092 * 12 11 10 15 15 N 1.30830 * 120.00294 * 342.27666 * 14 12 11 16 16 Si 1.86804 * 119.99399 * 162.55260 * 14 12 11 17 17 H 1.48497 * 109.46885 * 265.29750 * 16 14 12 18 18 H 1.48493 * 109.47273 * 25.30140 * 16 14 12 19 19 H 1.48503 * 109.46920 * 145.30168 * 16 14 12 20 20 C 1.38996 * 120.02309 * 180.25697 * 7 5 4 21 21 C 1.54505 * 110.51196 * 122.60751 * 2 1 3 22 22 C 1.54475 * 104.06492 * 118.78031 * 21 2 1 23 23 O 1.44423 * 104.80182 * 23.98336 * 22 21 2 24 24 C 1.44422 * 105.27312 * 319.48460 * 23 22 21 25 25 H 1.09008 * 109.46970 * 59.29794 * 1 2 3 26 26 H 1.08997 * 109.47050 * 179.29799 * 1 2 3 27 27 H 1.09001 * 109.47331 * 299.29972 * 1 2 3 28 28 H 1.09001 * 109.46907 * 182.60242 * 3 2 1 29 29 H 1.08999 * 109.46881 * 62.61010 * 3 2 1 30 30 H 0.97005 * 119.99636 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.81760 * 359.97438 * 8 7 5 32 32 H 1.07999 * 119.79826 * 180.02562 * 9 8 7 33 33 H 1.08004 * 119.97713 * 179.97438 * 10 9 8 34 34 H 0.97001 * 119.99733 * 180.28088 * 15 14 12 35 35 H 1.07997 * 120.20449 * 359.97438 * 20 7 5 36 36 H 1.09002 * 110.51292 * 237.43003 * 21 2 1 37 37 H 1.09002 * 110.50935 * 359.97438 * 21 2 1 38 38 H 1.09005 * 110.37512 * 142.80939 * 22 21 2 39 39 H 1.08997 * 110.37265 * 265.03633 * 22 21 2 40 40 H 1.09004 * 110.37665 * 281.67943 * 24 23 22 41 41 H 1.09007 * 110.37365 * 159.34706 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0647 1.4335 0.0000 4 7 1.5381 2.1512 -1.1635 5 6 1.8773 3.4390 -1.3711 6 8 2.6198 4.0050 -0.5930 7 6 1.3452 4.1636 -2.5454 8 6 0.4901 3.5128 -3.4414 9 6 -0.0112 4.1838 -4.5422 10 6 0.3250 5.5003 -4.7690 11 6 1.1839 6.1716 -3.8788 12 6 1.5315 7.5231 -4.1091 13 1 1.8301 8.1522 -3.2836 14 6 1.4885 8.0451 -5.4068 15 7 1.4717 7.2381 -6.4364 16 14 1.4629 9.8945 -5.6690 17 1 0.0582 10.3548 -5.8114 18 1 2.0890 10.5685 -4.5034 19 1 2.2210 10.2303 -6.9010 20 6 1.6990 5.4901 -2.7630 21 6 2.0714 -0.7798 1.2190 22 6 2.8786 -1.9394 0.5945 23 8 3.2435 -1.4684 -0.7211 24 6 2.0743 -0.7807 -1.2168 25 1 -0.3633 0.5247 -0.8837 26 1 -0.3633 -1.0276 -0.0126 27 1 -0.3634 0.5029 0.8962 28 1 3.1536 1.4151 -0.0467 29 1 1.7487 1.9391 0.9125 30 1 0.9458 1.6994 -1.7848 31 1 0.2205 2.4805 -3.2730 32 1 -0.6709 3.6727 -5.2277 33 1 -0.0701 6.0173 -5.6310 34 1 1.4461 7.6001 -7.3359 35 1 2.3621 5.9952 -2.0764 36 1 2.7199 -0.1441 1.8218 37 1 1.2490 -1.1650 1.8219 38 1 3.7714 -2.1420 1.1861 39 1 2.2616 -2.8349 0.5212 40 1 1.3332 -1.4980 -1.5698 41 1 2.3491 -0.0931 -2.0168 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353593826.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:27 Heat of formation + Delta-G solvation = -93.893274 kcal Electronic energy + Delta-G solvation = -22466.318018 eV Core-core repulsion = 19116.402018 eV Total energy + Delta-G solvation = -3349.916000 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.37868 -40.39718 -38.84398 -36.58074 -35.60344 -33.99573 -31.82989 -31.55496 -30.53745 -27.96857 -27.23147 -26.77223 -24.38569 -23.29486 -22.53285 -21.42575 -20.56399 -19.52209 -17.97669 -17.23593 -17.13055 -16.95689 -16.65702 -16.36828 -16.10737 -16.00156 -15.45711 -15.07581 -14.67303 -14.44061 -14.20928 -13.99543 -13.93076 -13.65656 -13.45685 -13.01468 -12.85813 -12.68187 -12.53336 -12.42933 -12.25407 -11.98952 -11.95608 -11.83136 -11.51890 -11.39623 -11.08417 -10.88790 -10.69717 -10.18388 -9.50626 -9.40331 -8.68737 -6.41041 0.36105 0.91970 1.37960 1.47077 1.51365 2.09627 2.17470 2.22525 2.74252 3.03113 3.46462 3.56747 3.66015 3.83152 3.98012 4.13360 4.21581 4.28540 4.39015 4.48200 4.61346 4.61907 4.69016 4.77157 4.83407 4.87823 4.96020 4.97944 5.04150 5.09220 5.14889 5.16970 5.26052 5.30443 5.40896 5.47643 5.78872 5.86790 5.95293 5.99959 6.21416 6.56047 6.60037 6.85904 6.90817 7.23979 8.29529 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.036815 B = 0.003082 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.385134 B = 9084.130191 C = 9324.778102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 C 0.135 3.865 4 N -0.709 5.709 5 C 0.562 3.438 6 O -0.590 6.590 7 C -0.125 4.125 8 C -0.188 4.188 9 C -0.109 4.109 10 C -0.161 4.161 11 C 0.073 3.927 12 C -0.503 4.503 13 H 0.069 0.931 14 C 0.039 3.961 15 N -0.822 5.822 16 Si 0.983 3.017 17 H -0.258 1.258 18 H -0.264 1.264 19 H -0.265 1.265 20 C -0.187 4.187 21 C -0.140 4.140 22 C 0.039 3.961 23 O -0.403 6.403 24 C 0.047 3.953 25 H 0.059 0.941 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.412 0.588 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.110 0.890 34 H 0.291 0.709 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.870 -16.934 8.565 19.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 C 0.012 3.988 4 N -0.363 5.363 5 C 0.352 3.648 6 O -0.472 6.472 7 C -0.128 4.128 8 C -0.207 4.207 9 C -0.127 4.127 10 C -0.181 4.181 11 C 0.070 3.930 12 C -0.532 4.532 13 H 0.087 0.913 14 C -0.177 4.177 15 N -0.448 5.448 16 Si 0.803 3.197 17 H -0.182 1.182 18 H -0.189 1.189 19 H -0.190 1.190 20 C -0.207 4.207 21 C -0.178 4.178 22 C -0.037 4.037 23 O -0.323 6.323 24 C -0.030 4.030 25 H 0.078 0.922 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.251 0.749 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.116 0.884 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.130 -16.620 8.763 19.237 hybrid contribution 0.037 1.061 -0.403 1.135 sum -4.093 -15.559 8.360 18.131 Atomic orbital electron populations 1.21872 0.91143 1.03613 1.02921 1.22156 0.98072 0.92848 0.96861 1.21416 0.97858 0.91416 0.88131 1.45787 1.50901 1.10976 1.28620 1.18667 0.79368 0.82090 0.84689 1.90657 1.38812 1.68988 1.48743 1.19606 1.02116 0.94719 0.96339 1.20847 1.03249 0.99919 0.96716 1.21017 0.99936 0.94369 0.97353 1.21536 0.99736 0.95556 1.01240 1.17880 0.90171 0.93726 0.91186 1.19807 1.42661 0.96206 0.94566 0.91269 1.26690 0.91093 1.05209 0.94658 1.69827 1.35406 1.39147 1.00400 0.85183 0.79660 0.76125 0.78691 1.18203 1.18851 1.18958 1.21180 1.03988 0.94265 1.01293 1.23041 1.01134 0.96915 0.96726 1.23614 1.00305 0.96692 0.83058 1.89132 1.36332 1.74181 1.32621 1.23692 0.88067 0.95240 0.95954 0.92193 0.89759 0.91562 0.93176 0.91710 0.74927 0.84379 0.85004 0.87176 0.89821 0.89781 0.90690 0.87460 0.88395 0.90334 0.89537 0.90232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.10 71.98 0.58 -1.19 16 2 C -0.10 -1.66 0.75 -51.17 -0.04 -1.70 16 3 C 0.14 3.43 4.39 86.38 0.38 3.81 16 4 N -0.71 -20.94 4.73 -465.95 -2.20 -23.14 16 5 C 0.56 23.35 7.77 86.80 0.67 24.02 16 6 O -0.59 -28.95 16.33 -3.84 -0.06 -29.01 16 7 C -0.12 -5.66 5.87 -20.13 -0.12 -5.78 16 8 C -0.19 -7.28 9.55 22.70 0.22 -7.06 16 9 C -0.11 -4.54 10.01 22.18 0.22 -4.32 16 10 C -0.16 -8.14 8.69 22.77 0.20 -7.94 16 11 C 0.07 4.00 5.57 -21.32 -0.12 3.88 16 12 C -0.50 -28.00 9.05 23.47 0.21 -27.79 16 13 H 0.07 3.83 7.90 -2.91 -0.02 3.81 16 14 C 0.04 1.96 5.14 85.25 0.44 2.40 16 15 N -0.82 -42.39 10.98 21.82 0.24 -42.15 16 16 Si 0.98 38.61 29.59 68.60 2.03 40.64 16 17 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 18 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 19 H -0.27 -9.81 7.11 99.48 0.71 -9.11 16 20 C -0.19 -9.97 9.34 23.01 0.21 -9.75 16 21 C -0.14 -1.87 6.38 31.61 0.20 -1.66 16 22 C 0.04 0.56 7.63 72.48 0.55 1.12 16 23 O -0.40 -9.00 11.65 -148.98 -1.74 -10.74 16 24 C 0.05 0.87 6.53 72.48 0.47 1.34 16 25 H 0.06 0.81 6.77 -2.38 -0.02 0.79 16 26 H 0.08 0.73 8.13 -2.39 -0.02 0.71 16 27 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.41 9.81 4.86 -92.70 -0.45 9.36 16 31 H 0.14 3.94 6.38 -2.91 -0.02 3.92 16 32 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 33 H 0.11 5.75 6.18 -2.91 -0.02 5.73 16 34 H 0.29 13.43 8.30 -92.71 -0.77 12.66 16 35 H 0.08 4.73 7.64 -2.91 -0.02 4.71 16 36 H 0.07 1.10 7.73 -2.39 -0.02 1.08 16 37 H 0.11 0.92 7.73 -2.39 -0.02 0.90 16 38 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.08 0.81 8.14 -2.39 -0.02 0.80 16 40 H 0.09 1.20 7.86 -2.38 -0.02 1.18 16 41 H 0.08 1.71 7.27 -2.38 -0.02 1.69 16 Total: -1.00 -68.69 334.87 2.95 -65.74 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: 0.59 Total: 29.27 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 4.09 Total: -30.61 kcal Atomic # 7 Polarization: -63.33 SS G_CDS: -1.96 Total: -65.29 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -1.80 Total: -39.74 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Total: -68.69 2.95 -65.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353593826.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.156 kcal (2) G-P(sol) polarization free energy of solvation -68.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds