Wall clock time and date at job start Tue Mar 31 2020 07:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 110.75329 * 2 1 4 4 N 1.46501 * 109.47157 * 59.30099 * 3 2 1 5 5 C 1.34773 * 119.99754 * 180.02562 * 4 3 2 6 6 O 1.21539 * 120.00143 * 359.97438 * 5 4 3 7 7 C 1.47890 * 119.99423 * 180.02562 * 5 4 3 8 8 C 1.39912 * 120.02935 * 359.97438 * 7 5 4 9 9 C 1.38332 * 120.36087 * 179.97438 * 8 7 5 10 10 C 1.37754 * 120.41101 * 359.97438 * 9 8 7 11 11 C 1.40749 * 120.03602 * 0.02562 * 10 9 8 12 12 C 1.41440 * 120.17278 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00324 * 24.36196 * 12 11 10 14 14 C 1.39939 * 120.00033 * 204.35444 * 12 11 10 15 15 N 1.30831 * 119.99976 * 17.74346 * 14 12 11 16 16 Si 1.86795 * 120.00243 * 197.74067 * 14 12 11 17 17 H 1.48497 * 109.47058 * 60.00406 * 16 14 12 18 18 H 1.48509 * 109.47279 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47378 * 300.00490 * 16 14 12 20 20 C 1.38999 * 120.01859 * 179.71947 * 7 5 4 21 21 C 1.55307 * 110.84515 * 236.30275 * 2 1 3 22 22 C 1.54940 * 100.94096 * 275.94326 * 21 2 1 23 23 O 1.43646 * 105.13771 * 323.55415 * 22 21 2 24 24 C 1.43235 * 109.97022 * 24.43310 * 23 22 21 25 25 H 1.09003 * 109.46627 * 297.98323 * 1 2 3 26 26 H 1.08998 * 109.46855 * 177.98450 * 1 2 3 27 27 H 1.08999 * 109.46874 * 57.97911 * 1 2 3 28 28 H 1.08997 * 109.47147 * 179.30176 * 3 2 1 29 29 H 1.09004 * 109.46837 * 299.30075 * 3 2 1 30 30 H 0.97002 * 119.99791 * 359.97438 * 4 3 2 31 31 H 1.08003 * 119.82240 * 359.96046 * 8 7 5 32 32 H 1.08000 * 119.79330 * 180.02562 * 9 8 7 33 33 H 1.07996 * 119.98137 * 180.02562 * 10 9 8 34 34 H 0.96995 * 119.99974 * 179.97438 * 15 14 12 35 35 H 1.07995 * 120.20683 * 0.02562 * 20 7 5 36 36 H 1.09005 * 111.12382 * 33.86231 * 21 2 1 37 37 H 1.09002 * 111.12433 * 158.02397 * 21 2 1 38 38 H 1.09007 * 110.30719 * 204.64256 * 22 21 2 39 39 H 1.09000 * 110.31161 * 82.47142 * 22 21 2 40 40 H 1.09008 * 109.82417 * 238.77491 * 24 23 22 41 41 H 1.08998 * 109.90743 * 117.84307 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0722 1.4308 0.0000 4 7 1.5859 2.1373 1.1877 5 6 1.9374 3.4211 1.3991 6 8 2.6583 3.9925 0.6047 7 6 1.4469 4.1340 2.5983 8 6 0.6174 3.4766 3.5134 9 6 0.1551 4.1367 4.6377 10 6 0.5061 5.4484 4.8698 11 6 1.3396 6.1262 3.9604 12 6 1.7014 7.4732 4.1956 13 1 1.6929 7.8669 5.2013 14 6 2.0705 8.2956 3.1253 15 7 1.7593 7.9551 1.9011 16 14 3.0075 9.8798 3.4446 17 1 4.2941 9.5669 4.1168 18 1 3.2762 10.5646 2.1545 19 1 2.1966 10.7675 4.3162 20 6 1.8139 5.4563 2.8199 21 6 2.0827 -0.8053 -1.2076 22 6 2.0402 -2.2477 -0.6434 23 8 2.3853 -2.1178 0.7449 24 6 2.0794 -0.7957 1.2035 25 1 -0.3633 0.4822 0.9076 26 1 -0.3633 -1.0270 -0.0361 27 1 -0.3633 0.5449 -0.8713 28 1 3.1618 1.4064 0.0125 29 1 1.7306 1.9487 -0.8962 30 1 1.0102 1.6813 1.8214 31 1 0.3364 2.4481 3.3409 32 1 -0.4844 3.6203 5.3382 33 1 0.1415 5.9570 5.7500 34 1 2.0148 8.5254 1.1592 35 1 2.4569 5.9666 2.1182 36 1 1.4334 -0.7043 -2.0773 37 1 3.1037 -0.5062 -1.4449 38 1 2.7677 -2.8764 -1.1569 39 1 1.0385 -2.6650 -0.7467 40 1 2.9830 -0.3173 1.5817 41 1 1.3275 -0.8409 1.9913 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000353594205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:30 Heat of formation + Delta-G solvation = -76.068298 kcal Electronic energy + Delta-G solvation = -22632.195219 eV Core-core repulsion = 19283.052168 eV Total energy + Delta-G solvation = -3349.143051 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.29930 -38.97213 -37.04429 -35.37605 -33.77563 -32.70452 -30.33089 -29.70509 -29.43894 -27.21949 -25.99292 -25.17082 -22.97368 -22.00063 -20.96378 -19.79040 -19.45035 -17.81700 -16.69733 -16.35448 -15.73077 -15.52643 -15.14318 -15.00832 -14.67300 -14.56511 -13.88240 -13.77160 -13.31053 -13.23033 -13.04248 -12.70670 -12.57302 -12.49465 -12.11427 -11.73009 -11.64568 -11.17749 -11.15022 -11.10005 -11.01103 -10.82579 -10.75319 -10.51554 -10.05026 -9.71256 -9.70801 -9.22265 -9.04924 -8.70367 -7.64713 -7.53830 -6.81475 -4.42926 2.19352 2.80924 3.06759 3.08392 3.15760 3.54907 3.67949 3.84825 3.91080 4.15957 4.45078 4.58045 4.63650 4.85445 4.89549 4.94963 5.35369 5.42012 5.48953 5.52941 5.55360 5.59143 5.67075 5.70477 5.77928 5.81962 5.94170 6.04159 6.08696 6.25080 6.70337 6.75069 6.82206 6.97118 7.00091 7.19732 7.36496 7.68074 7.73711 7.90738 8.06112 8.17221 8.48831 8.78631 8.81873 8.92257 10.13158 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028597 B = 0.003467 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.874539 B = 8075.200436 C = 8675.902234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C 0.139 3.861 4 N -0.737 5.737 5 C 0.564 3.436 6 O -0.546 6.546 7 C -0.128 4.128 8 C -0.219 4.219 9 C -0.097 4.097 10 C -0.212 4.212 11 C 0.099 3.901 12 C -0.460 4.460 13 H 0.081 0.919 14 C 0.073 3.927 15 N -0.783 5.783 16 Si 0.911 3.089 17 H -0.263 1.263 18 H -0.277 1.277 19 H -0.265 1.265 20 C -0.092 4.092 21 C -0.144 4.144 22 C 0.053 3.947 23 O -0.384 6.384 24 C 0.058 3.942 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.398 0.602 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.285 0.715 35 H 0.134 0.866 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.533 -14.394 -4.923 15.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C 0.014 3.986 4 N -0.392 5.392 5 C 0.355 3.645 6 O -0.424 6.424 7 C -0.131 4.131 8 C -0.239 4.239 9 C -0.115 4.115 10 C -0.232 4.232 11 C 0.097 3.903 12 C -0.489 4.489 13 H 0.099 0.901 14 C -0.146 4.146 15 N -0.407 5.407 16 Si 0.735 3.265 17 H -0.187 1.187 18 H -0.202 1.202 19 H -0.190 1.190 20 C -0.112 4.112 21 C -0.182 4.182 22 C -0.024 4.024 23 O -0.303 6.303 24 C -0.018 4.018 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.234 0.766 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.152 0.848 36 H 0.105 0.895 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.911 -14.048 -5.640 15.165 hybrid contribution -0.122 0.658 0.194 0.697 sum -1.033 -13.390 -5.446 14.492 Atomic orbital electron populations 1.21840 0.92713 1.02102 1.03020 1.22391 0.97189 0.95481 0.95794 1.21159 0.98829 0.89207 0.89362 1.45967 1.53949 1.13346 1.25906 1.18850 0.79211 0.80411 0.86055 1.90696 1.37445 1.66928 1.47295 1.19462 1.03088 0.95783 0.94793 1.20314 1.07255 0.98166 0.98184 1.20431 0.99598 0.94974 0.96514 1.21097 1.04172 0.95349 1.02612 1.17596 0.88917 0.93074 0.90749 1.19568 1.39788 0.94807 0.94725 0.90091 1.25971 0.93905 1.00221 0.94505 1.69781 1.33691 1.37189 1.00045 0.86316 0.80772 0.80695 0.78686 1.18703 1.20214 1.18968 1.21641 0.99603 0.90944 0.99043 1.23302 1.02636 0.94568 0.97704 1.23354 1.00391 0.96589 0.82055 1.88396 1.85744 1.30969 1.25232 1.23302 1.00453 0.82353 0.95736 0.91769 0.92125 0.91696 0.91480 0.91325 0.76565 0.89393 0.88907 0.88616 0.90370 0.84848 0.89470 0.89807 0.89774 0.92187 0.90639 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.24 37.16 0.31 -0.98 16 2 C -0.11 -1.09 0.62 -152.56 -0.10 -1.19 16 3 C 0.14 1.85 4.51 -4.04 -0.02 1.83 16 4 N -0.74 -11.79 5.08 -61.24 -0.31 -12.10 16 5 C 0.56 12.18 7.77 -12.31 -0.10 12.08 16 6 O -0.55 -13.59 16.33 5.33 0.09 -13.50 16 7 C -0.13 -3.00 5.87 -105.04 -0.62 -3.61 16 8 C -0.22 -4.55 9.55 -38.92 -0.37 -4.92 16 9 C -0.10 -2.05 10.01 -39.72 -0.40 -2.44 16 10 C -0.21 -5.01 9.78 -38.81 -0.38 -5.39 16 11 C 0.10 2.61 5.57 -106.87 -0.60 2.02 16 12 C -0.46 -12.04 9.05 -37.73 -0.34 -12.38 16 13 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 14 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 15 N -0.78 -20.67 10.96 55.55 0.61 -20.06 16 16 Si 0.91 18.72 29.59 -169.99 -5.03 13.69 16 17 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 20 C -0.09 -2.45 8.24 -38.44 -0.32 -2.77 16 21 C -0.14 -1.21 6.12 -24.48 -0.15 -1.36 16 22 C 0.05 0.45 7.48 38.18 0.29 0.74 16 23 O -0.38 -4.51 11.36 -35.23 -0.40 -4.91 16 24 C 0.06 0.64 6.57 37.88 0.25 0.89 16 25 H 0.06 0.62 6.98 -51.93 -0.36 0.26 16 26 H 0.06 0.49 7.50 -51.93 -0.39 0.10 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.95 8.12 -51.93 -0.42 0.52 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.40 5.57 5.15 -40.82 -0.21 5.36 16 31 H 0.09 1.50 6.38 -52.48 -0.33 1.16 16 32 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 33 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 34 H 0.29 6.94 8.30 -40.82 -0.34 6.60 16 35 H 0.13 3.84 5.74 -52.49 -0.30 3.54 16 36 H 0.09 0.61 8.04 -51.93 -0.42 0.19 16 37 H 0.08 0.71 8.05 -51.93 -0.42 0.29 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.45 7.75 -51.93 -0.40 0.05 16 40 H 0.08 0.89 7.80 -51.92 -0.40 0.49 16 41 H 0.07 0.73 7.84 -51.93 -0.41 0.32 16 LS Contribution 335.23 15.07 5.05 5.05 Total: -1.00 -29.99 335.23 -8.35 -38.34 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.73 Total: 9.23 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -2.63 Total: -15.74 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: 0.30 Total: -32.16 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.31 Total: -18.42 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.99 -8.35 -38.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353594205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.730 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds