Wall clock time and date at job start Tue Mar 31 2020 07:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 110.75329 * 2 1 4 4 N 1.46501 * 109.47157 * 59.30099 * 3 2 1 5 5 C 1.34773 * 119.99754 * 180.02562 * 4 3 2 6 6 O 1.21539 * 120.00143 * 359.97438 * 5 4 3 7 7 C 1.47890 * 119.99423 * 180.02562 * 5 4 3 8 8 C 1.39912 * 120.02935 * 359.97438 * 7 5 4 9 9 C 1.38332 * 120.36087 * 179.97438 * 8 7 5 10 10 C 1.37754 * 120.41101 * 359.97438 * 9 8 7 11 11 C 1.40749 * 120.03602 * 0.02562 * 10 9 8 12 12 C 1.41440 * 120.17278 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00324 * 24.36196 * 12 11 10 14 14 C 1.39939 * 120.00033 * 204.35444 * 12 11 10 15 15 N 1.30831 * 119.99976 * 17.74346 * 14 12 11 16 16 Si 1.86795 * 120.00243 * 197.74067 * 14 12 11 17 17 H 1.48497 * 109.47058 * 60.00406 * 16 14 12 18 18 H 1.48509 * 109.47279 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47378 * 300.00490 * 16 14 12 20 20 C 1.38999 * 120.01859 * 179.71947 * 7 5 4 21 21 C 1.55307 * 110.84515 * 236.30275 * 2 1 3 22 22 C 1.54940 * 100.94096 * 275.94326 * 21 2 1 23 23 O 1.43646 * 105.13771 * 323.55415 * 22 21 2 24 24 C 1.43235 * 109.97022 * 24.43310 * 23 22 21 25 25 H 1.09003 * 109.46627 * 297.98323 * 1 2 3 26 26 H 1.08998 * 109.46855 * 177.98450 * 1 2 3 27 27 H 1.08999 * 109.46874 * 57.97911 * 1 2 3 28 28 H 1.08997 * 109.47147 * 179.30176 * 3 2 1 29 29 H 1.09004 * 109.46837 * 299.30075 * 3 2 1 30 30 H 0.97002 * 119.99791 * 359.97438 * 4 3 2 31 31 H 1.08003 * 119.82240 * 359.96046 * 8 7 5 32 32 H 1.08000 * 119.79330 * 180.02562 * 9 8 7 33 33 H 1.07996 * 119.98137 * 180.02562 * 10 9 8 34 34 H 0.96995 * 119.99974 * 179.97438 * 15 14 12 35 35 H 1.07995 * 120.20683 * 0.02562 * 20 7 5 36 36 H 1.09005 * 111.12382 * 33.86231 * 21 2 1 37 37 H 1.09002 * 111.12433 * 158.02397 * 21 2 1 38 38 H 1.09007 * 110.30719 * 204.64256 * 22 21 2 39 39 H 1.09000 * 110.31161 * 82.47142 * 22 21 2 40 40 H 1.09008 * 109.82417 * 238.77491 * 24 23 22 41 41 H 1.08998 * 109.90743 * 117.84307 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0722 1.4308 0.0000 4 7 1.5859 2.1373 1.1877 5 6 1.9374 3.4211 1.3991 6 8 2.6583 3.9925 0.6047 7 6 1.4469 4.1340 2.5983 8 6 0.6174 3.4766 3.5134 9 6 0.1551 4.1367 4.6377 10 6 0.5061 5.4484 4.8698 11 6 1.3396 6.1262 3.9604 12 6 1.7014 7.4732 4.1956 13 1 1.6929 7.8669 5.2013 14 6 2.0705 8.2956 3.1253 15 7 1.7593 7.9551 1.9011 16 14 3.0075 9.8798 3.4446 17 1 4.2941 9.5669 4.1168 18 1 3.2762 10.5646 2.1545 19 1 2.1966 10.7675 4.3162 20 6 1.8139 5.4563 2.8199 21 6 2.0827 -0.8053 -1.2076 22 6 2.0402 -2.2477 -0.6434 23 8 2.3853 -2.1178 0.7449 24 6 2.0794 -0.7957 1.2035 25 1 -0.3633 0.4822 0.9076 26 1 -0.3633 -1.0270 -0.0361 27 1 -0.3633 0.5449 -0.8713 28 1 3.1618 1.4064 0.0125 29 1 1.7306 1.9487 -0.8962 30 1 1.0102 1.6813 1.8214 31 1 0.3364 2.4481 3.3409 32 1 -0.4844 3.6203 5.3382 33 1 0.1415 5.9570 5.7500 34 1 2.0148 8.5254 1.1592 35 1 2.4569 5.9666 2.1182 36 1 1.4334 -0.7043 -2.0773 37 1 3.1037 -0.5062 -1.4449 38 1 2.7677 -2.8764 -1.1569 39 1 1.0385 -2.6650 -0.7467 40 1 2.9830 -0.3173 1.5817 41 1 1.3275 -0.8409 1.9913 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000353594205.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:29 Heat of formation + Delta-G solvation = -94.889652 kcal Electronic energy + Delta-G solvation = -22633.011374 eV Core-core repulsion = 19283.052168 eV Total energy + Delta-G solvation = -3349.959206 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.36187 -40.43025 -38.80787 -36.59747 -35.60652 -33.95420 -31.98178 -31.27857 -30.56411 -28.14185 -27.34973 -26.76980 -24.22352 -23.16864 -22.77589 -21.23662 -20.59609 -19.50468 -18.09275 -17.33913 -17.18121 -16.87852 -16.61038 -16.29722 -16.20807 -15.72891 -15.35792 -15.06805 -14.69882 -14.45349 -14.41590 -14.27577 -13.83725 -13.49299 -13.38000 -13.06090 -12.93745 -12.80483 -12.52640 -12.43242 -12.21347 -11.96894 -11.91201 -11.82932 -11.63084 -11.51179 -11.06916 -10.80282 -10.49038 -10.18214 -9.47585 -9.38859 -8.66948 -6.38542 0.37379 1.01147 1.36163 1.47672 1.50548 2.09089 2.18781 2.20013 2.78299 2.88789 3.32622 3.60760 3.69514 3.76891 4.00594 4.04197 4.18397 4.28534 4.41570 4.53595 4.58429 4.64046 4.67365 4.80010 4.83122 4.85337 4.91119 4.96570 5.05993 5.07559 5.08585 5.18979 5.30333 5.31674 5.41380 5.51779 5.85762 5.92087 6.01475 6.05008 6.28374 6.48924 6.66328 6.87528 6.94310 7.28321 8.29589 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028597 B = 0.003467 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.874539 B = 8075.200436 C = 8675.902234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.098 4.098 3 C 0.137 3.863 4 N -0.711 5.711 5 C 0.561 3.439 6 O -0.589 6.589 7 C -0.139 4.139 8 C -0.198 4.198 9 C -0.095 4.095 10 C -0.218 4.218 11 C 0.068 3.932 12 C -0.499 4.499 13 H 0.084 0.916 14 C 0.030 3.970 15 N -0.824 5.824 16 Si 0.983 3.017 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.252 1.252 20 C -0.131 4.131 21 C -0.140 4.140 22 C 0.049 3.951 23 O -0.405 6.405 24 C 0.057 3.943 25 H 0.061 0.939 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.411 0.589 31 H 0.135 0.865 32 H 0.139 0.861 33 H 0.108 0.892 34 H 0.287 0.713 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.867 -16.685 -4.477 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.099 4.099 3 C 0.014 3.986 4 N -0.364 5.364 5 C 0.350 3.650 6 O -0.470 6.470 7 C -0.142 4.142 8 C -0.218 4.218 9 C -0.113 4.113 10 C -0.238 4.238 11 C 0.065 3.935 12 C -0.528 4.528 13 H 0.102 0.898 14 C -0.185 4.185 15 N -0.450 5.450 16 Si 0.803 3.197 17 H -0.185 1.185 18 H -0.196 1.196 19 H -0.176 1.176 20 C -0.152 4.152 21 C -0.178 4.178 22 C -0.027 4.027 23 O -0.325 6.325 24 C -0.020 4.020 25 H 0.080 0.920 26 H 0.096 0.904 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.250 0.750 31 H 0.153 0.847 32 H 0.157 0.843 33 H 0.126 0.874 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.279 -16.401 -5.178 17.349 hybrid contribution 0.221 1.121 0.067 1.145 sum -2.058 -15.280 -5.111 16.243 Atomic orbital electron populations 1.21857 0.91481 1.03257 1.03009 1.22307 0.97979 0.92956 0.96653 1.21319 0.98479 0.90988 0.87820 1.45738 1.52644 1.11406 1.26652 1.18729 0.79035 0.81907 0.85284 1.90672 1.39516 1.68339 1.48522 1.19778 1.03243 0.95146 0.96071 1.20828 1.04409 0.99932 0.96600 1.20924 0.99182 0.94034 0.97121 1.21412 1.03368 0.96672 1.02306 1.17941 0.90099 0.93776 0.91646 1.19854 1.42092 0.95581 0.95251 0.89785 1.26856 0.94174 1.03591 0.93922 1.69884 1.35354 1.38760 1.00985 0.85240 0.79211 0.76482 0.78746 1.18547 1.19648 1.17619 1.21446 1.01404 0.92705 0.99638 1.23327 1.02835 0.94094 0.97574 1.23557 1.01740 0.96747 0.80657 1.88377 1.86127 1.31018 1.26947 1.23291 1.00088 0.82365 0.96212 0.92021 0.90424 0.91486 0.92403 0.91775 0.75025 0.84699 0.84317 0.87364 0.90299 0.88363 0.87548 0.90165 0.88479 0.90610 0.92124 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.24 71.98 0.59 -1.51 16 2 C -0.10 -1.76 0.62 -50.92 -0.03 -1.79 16 3 C 0.14 3.53 4.51 86.38 0.39 3.92 16 4 N -0.71 -21.76 5.08 -465.93 -2.37 -24.12 16 5 C 0.56 24.41 7.77 86.80 0.67 25.08 16 6 O -0.59 -30.57 16.33 -3.84 -0.06 -30.63 16 7 C -0.14 -6.55 5.87 -20.13 -0.12 -6.66 16 8 C -0.20 -7.66 9.55 22.70 0.22 -7.44 16 9 C -0.09 -3.70 10.01 22.18 0.22 -3.48 16 10 C -0.22 -10.13 9.78 22.77 0.22 -9.91 16 11 C 0.07 3.68 5.57 -21.32 -0.12 3.56 16 12 C -0.50 -27.22 9.05 23.47 0.21 -27.01 16 13 H 0.08 4.32 7.91 -2.91 -0.02 4.29 16 14 C 0.03 1.55 5.14 85.25 0.44 1.99 16 15 N -0.82 -46.11 10.96 21.83 0.24 -45.87 16 16 Si 0.98 39.73 29.59 68.60 2.03 41.76 16 17 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 18 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 19 H -0.25 -9.58 7.11 99.48 0.71 -8.87 16 20 C -0.13 -7.31 8.24 23.01 0.19 -7.12 16 21 C -0.14 -2.00 6.12 32.05 0.20 -1.80 16 22 C 0.05 0.70 7.48 72.65 0.54 1.24 16 23 O -0.40 -8.58 11.36 -148.98 -1.69 -10.27 16 24 C 0.06 1.13 6.57 72.45 0.48 1.60 16 25 H 0.06 0.96 6.98 -2.39 -0.02 0.95 16 26 H 0.08 0.95 7.50 -2.39 -0.02 0.93 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.62 8.12 -2.39 -0.02 1.60 16 29 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.41 10.26 5.15 -92.71 -0.48 9.78 16 31 H 0.14 3.90 6.38 -2.91 -0.02 3.88 16 32 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 33 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 34 H 0.29 14.80 8.30 -92.71 -0.77 14.04 16 35 H 0.10 6.10 5.74 -2.91 -0.02 6.09 16 36 H 0.11 1.13 8.04 -2.38 -0.02 1.11 16 37 H 0.08 1.21 8.05 -2.39 -0.02 1.19 16 38 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 39 H 0.08 0.86 7.75 -2.39 -0.02 0.84 16 40 H 0.06 1.36 7.80 -2.38 -0.02 1.34 16 41 H 0.08 1.42 7.84 -2.39 -0.02 1.40 16 Total: -1.00 -69.62 335.23 2.82 -66.80 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.56 Total: 31.66 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 4.11 Total: -29.32 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -2.13 Total: -70.00 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -1.75 Total: -40.90 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -69.62 2.82 -66.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000353594205.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.086 kcal (2) G-P(sol) polarization free energy of solvation -69.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds