Wall clock time and date at job start Tue Mar 31 2020 06:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46946 * 2 1 4 4 S 1.81398 * 109.47400 * 60.00225 * 3 2 1 5 5 O 1.42096 * 110.54059 * 68.37394 * 4 3 2 6 6 O 1.42107 * 110.54166 * 291.62609 * 4 3 2 7 7 N 1.65593 * 104.45010 * 179.97438 * 4 3 2 8 8 C 1.46506 * 120.00245 * 65.00091 * 7 4 3 9 9 C 1.52997 * 109.47289 * 165.00019 * 8 7 4 10 10 C 1.50696 * 109.47242 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99967 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00542 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00563 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 119.99513 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47173 * 90.00033 * 14 12 10 16 16 H 1.48502 * 109.46811 * 209.99659 * 14 12 10 17 17 H 1.48495 * 109.47087 * 329.99741 * 14 12 10 18 18 C 1.53000 * 109.46973 * 120.00156 * 2 1 3 19 19 C 1.52998 * 109.47412 * 60.00129 * 18 2 1 20 20 C 1.52996 * 109.46979 * 59.99534 * 19 18 2 21 21 C 1.53001 * 109.47488 * 300.00066 * 20 19 18 22 22 C 1.52995 * 109.47134 * 60.00357 * 21 20 19 23 23 H 1.09001 * 109.47346 * 60.00142 * 1 2 3 24 24 H 1.09003 * 109.47130 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47310 * 300.00039 * 1 2 3 26 26 H 1.09001 * 109.46982 * 300.00081 * 3 2 1 27 27 H 1.09000 * 109.46999 * 180.02562 * 3 2 1 28 28 H 0.97000 * 120.00411 * 244.99763 * 7 4 3 29 29 H 1.09001 * 109.47060 * 285.00288 * 8 7 4 30 30 H 1.09004 * 109.47073 * 44.99777 * 8 7 4 31 31 H 1.09001 * 109.46832 * 299.99854 * 9 8 7 32 32 H 1.08996 * 109.46952 * 59.99873 * 9 8 7 33 33 H 0.96999 * 120.00061 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.46834 * 179.97438 * 18 2 1 35 35 H 1.08998 * 109.46973 * 299.99483 * 18 2 1 36 36 H 1.09000 * 109.46999 * 299.99749 * 19 18 2 37 37 H 1.09001 * 109.46982 * 179.97438 * 19 18 2 38 38 H 1.09006 * 109.47091 * 179.97438 * 20 19 18 39 39 H 1.08992 * 109.47325 * 60.00510 * 20 19 18 40 40 H 1.09000 * 109.47123 * 300.00172 * 21 20 19 41 41 H 1.08998 * 109.47032 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47234 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.47267 * 59.99903 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 1.4354 2.2976 1.4811 5 8 2.0481 1.7670 2.6482 6 8 0.0279 2.4811 1.4114 7 7 2.0541 3.8285 1.3559 8 6 1.6254 4.7048 0.2629 9 6 2.0349 6.1458 0.5739 10 6 1.5933 7.0473 -0.5501 11 1 1.0730 6.6337 -1.4014 12 6 1.8535 8.4000 -0.4918 13 7 1.4686 9.1866 -1.4729 14 14 2.7529 9.1154 0.9810 15 1 4.2154 9.0974 0.7245 16 1 2.3063 10.5144 1.2019 17 1 2.4518 8.3033 2.1872 18 6 2.0400 -0.7213 1.2492 19 6 1.5300 -2.1638 1.2492 20 6 2.0400 -2.8849 0.0000 21 6 1.5300 -2.1637 -1.2493 22 6 2.0400 -0.7213 -1.2493 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6766 1.9563 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 2.7005 4.1452 2.0062 29 1 2.0980 4.3851 -0.6658 30 1 0.5419 4.6498 0.1568 31 1 1.5622 6.4654 1.5026 32 1 3.1183 6.2007 0.6800 33 1 1.6520 10.1382 -1.4320 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -0.2074 2.1392 36 1 0.4400 -2.1638 1.2493 37 1 1.8938 -2.6777 2.1390 38 1 1.6771 -3.9128 0.0002 39 1 3.1299 -2.8850 -0.0001 40 1 0.4400 -2.1637 -1.2493 41 1 1.8929 -2.6778 -2.1392 42 1 1.6762 -0.2073 -2.1391 43 1 3.1300 -0.7213 -1.2494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356213293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:13 Heat of formation + Delta-G solvation = -106.275710 kcal Electronic energy + Delta-G solvation = -22114.002354 eV Core-core repulsion = 18898.993363 eV Total energy + Delta-G solvation = -3215.008991 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.78833 -36.97201 -35.82724 -35.53981 -33.65783 -32.71158 -31.05347 -29.71449 -27.80175 -26.82659 -24.57679 -22.97003 -21.66191 -20.90832 -19.17232 -18.69136 -17.55402 -16.83810 -16.23015 -16.09922 -15.41542 -14.95287 -14.80585 -14.42252 -14.24404 -14.03951 -13.93715 -13.38189 -13.10147 -12.69363 -12.64508 -12.39439 -12.21331 -11.97332 -11.88748 -11.80124 -11.63498 -11.57489 -11.38799 -11.23018 -11.21085 -10.86111 -10.51486 -10.44723 -10.33115 -10.11852 -9.99762 -9.83618 -9.35902 -8.98087 -8.62072 -6.12916 -4.13085 0.43046 2.97292 3.25611 3.34199 3.37123 3.84342 4.16601 4.25952 4.37824 4.39892 4.49580 4.78373 4.88359 4.95297 5.04708 5.13591 5.17322 5.20928 5.28419 5.38668 5.44305 5.50517 5.61306 5.66861 5.73991 5.80015 5.81641 5.92060 5.93497 5.97846 6.02235 6.08524 6.13257 6.24397 6.30867 6.49363 7.10664 7.20731 7.30528 7.67270 8.40567 8.89697 9.47939 10.99924 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033200 B = 0.003642 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.172905 B = 7686.749913 C = 8046.488841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.042 4.042 3 C -0.624 4.624 4 S 2.609 3.391 5 O -0.968 6.968 6 O -0.954 6.954 7 N -1.121 6.121 8 C 0.123 3.877 9 C -0.018 4.018 10 C -0.526 4.526 11 H 0.076 0.924 12 C 0.070 3.930 13 N -0.899 5.899 14 Si 0.880 3.120 15 H -0.276 1.276 16 H -0.286 1.286 17 H -0.265 1.265 18 C -0.142 4.142 19 C -0.120 4.120 20 C -0.120 4.120 21 C -0.123 4.123 22 C -0.101 4.101 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.136 0.864 27 H 0.132 0.868 28 H 0.414 0.586 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.026 0.974 32 H 0.019 0.981 33 H 0.265 0.735 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.348 -22.974 2.445 23.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.044 4.044 3 C -0.753 4.753 4 S 2.702 3.298 5 O -0.958 6.958 6 O -0.944 6.944 7 N -0.881 5.881 8 C -0.001 4.001 9 C -0.057 4.057 10 C -0.564 4.564 11 H 0.094 0.906 12 C -0.132 4.132 13 N -0.537 5.537 14 Si 0.707 3.293 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.189 1.189 18 C -0.179 4.179 19 C -0.157 4.157 20 C -0.158 4.158 21 C -0.161 4.161 22 C -0.139 4.139 23 H 0.088 0.912 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.154 0.846 27 H 0.151 0.849 28 H 0.248 0.752 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.044 0.956 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.655 -23.150 2.937 23.394 hybrid contribution 1.265 0.827 0.204 1.525 sum 2.919 -22.323 3.141 22.731 Atomic orbital electron populations 1.22475 0.93429 1.03566 1.04270 1.20226 0.96226 0.90491 0.97435 1.30726 1.12739 1.08253 1.23589 1.04942 0.75113 0.73560 0.76206 1.93556 1.78287 1.78963 1.45007 1.93590 1.29399 1.84377 1.87033 1.55598 1.61018 1.30877 1.40598 1.21467 0.99729 0.92371 0.86573 1.19751 0.96679 0.90777 0.98490 1.20958 1.38401 0.91934 1.05129 0.90612 1.24992 0.95224 0.97028 0.95993 1.69898 1.46795 1.04943 1.32063 0.86778 0.80185 0.78531 0.83806 1.20218 1.21233 1.18908 1.22098 1.01991 0.96778 0.97074 1.21554 1.01222 0.94947 0.97975 1.21556 1.00834 0.98717 0.94687 1.21612 1.01288 0.95377 0.97806 1.21544 1.00719 0.95205 0.96426 0.91223 0.90742 0.90842 0.84609 0.84941 0.75236 0.92482 0.90676 0.95594 0.96281 0.92537 0.90783 0.90177 0.91379 0.91632 0.92077 0.91989 0.91410 0.91935 0.91414 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.95 7.30 37.16 0.27 -1.68 16 2 C -0.04 -0.44 0.54 -154.50 -0.08 -0.52 16 3 C -0.62 -6.85 5.07 37.16 0.19 -6.66 16 4 S 2.61 38.06 4.49 -107.50 -0.48 37.57 16 5 O -0.97 -15.58 15.70 -57.54 -0.90 -16.48 16 6 O -0.95 -16.77 15.12 -57.54 -0.87 -17.64 16 7 N -1.12 -17.61 5.89 -10.61 -0.06 -17.67 16 8 C 0.12 2.29 6.07 -4.04 -0.02 2.27 16 9 C -0.02 -0.41 4.18 -27.89 -0.12 -0.52 16 10 C -0.53 -14.40 9.66 -34.44 -0.33 -14.73 16 11 H 0.08 2.20 7.99 -52.48 -0.42 1.78 16 12 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 13 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 14 Si 0.88 21.12 27.47 -169.99 -4.67 16.45 16 15 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.26 -6.11 6.54 56.52 0.37 -5.74 16 18 C -0.14 -1.49 4.26 -26.73 -0.11 -1.60 16 19 C -0.12 -1.03 5.65 -26.73 -0.15 -1.18 16 20 C -0.12 -0.90 5.92 -26.73 -0.16 -1.06 16 21 C -0.12 -0.94 5.65 -26.73 -0.15 -1.09 16 22 C -0.10 -0.88 4.73 -26.73 -0.13 -1.00 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.67 4.81 -51.93 -0.25 0.42 16 25 H 0.07 0.92 5.46 -51.93 -0.28 0.64 16 26 H 0.14 1.37 8.14 -51.92 -0.42 0.95 16 27 H 0.13 1.21 8.14 -51.92 -0.42 0.79 16 28 H 0.41 5.99 8.62 -34.47 -0.30 5.70 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.45 7.70 -51.93 -0.40 1.05 16 31 H 0.03 0.60 7.20 -51.93 -0.37 0.22 16 32 H 0.02 0.41 7.57 -51.93 -0.39 0.02 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.97 5.46 -51.93 -0.28 0.69 16 36 H 0.07 0.57 6.43 -51.93 -0.33 0.23 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.51 6.43 -51.93 -0.33 0.17 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 333.42 15.07 5.02 5.02 Total: -1.00 -32.63 333.42 -9.27 -41.90 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.18 Total: 3.00 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: -0.90 Total: -25.91 kcal Atomic # 7 Polarization: -44.63 SS G_CDS: 0.71 Total: -43.92 kcal Atomic # 8 Polarization: -32.34 SS G_CDS: -1.77 Total: -34.12 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.67 Total: 16.45 kcal Atomic # 16 Polarization: 38.06 SS G_CDS: -0.48 Total: 37.57 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.63 -9.27 -41.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356213293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.379 kcal (2) G-P(sol) polarization free energy of solvation -32.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds