Wall clock time and date at job start Tue Mar 31 2020 06:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46946 * 2 1 4 4 S 1.81398 * 109.47400 * 60.00225 * 3 2 1 5 5 O 1.42096 * 110.54059 * 68.37394 * 4 3 2 6 6 O 1.42107 * 110.54166 * 291.62609 * 4 3 2 7 7 N 1.65593 * 104.45010 * 179.97438 * 4 3 2 8 8 C 1.46506 * 120.00245 * 65.00091 * 7 4 3 9 9 C 1.52997 * 109.47289 * 165.00019 * 8 7 4 10 10 C 1.50696 * 109.47242 * 180.02562 * 9 8 7 11 11 H 1.08004 * 119.99967 * 359.97438 * 10 9 8 12 12 C 1.37875 * 120.00542 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00563 * 179.97438 * 12 10 9 14 14 Si 1.86807 * 119.99513 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.47173 * 90.00033 * 14 12 10 16 16 H 1.48502 * 109.46811 * 209.99659 * 14 12 10 17 17 H 1.48495 * 109.47087 * 329.99741 * 14 12 10 18 18 C 1.53000 * 109.46973 * 120.00156 * 2 1 3 19 19 C 1.52998 * 109.47412 * 60.00129 * 18 2 1 20 20 C 1.52996 * 109.46979 * 59.99534 * 19 18 2 21 21 C 1.53001 * 109.47488 * 300.00066 * 20 19 18 22 22 C 1.52995 * 109.47134 * 60.00357 * 21 20 19 23 23 H 1.09001 * 109.47346 * 60.00142 * 1 2 3 24 24 H 1.09003 * 109.47130 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47310 * 300.00039 * 1 2 3 26 26 H 1.09001 * 109.46982 * 300.00081 * 3 2 1 27 27 H 1.09000 * 109.46999 * 180.02562 * 3 2 1 28 28 H 0.97000 * 120.00411 * 244.99763 * 7 4 3 29 29 H 1.09001 * 109.47060 * 285.00288 * 8 7 4 30 30 H 1.09004 * 109.47073 * 44.99777 * 8 7 4 31 31 H 1.09001 * 109.46832 * 299.99854 * 9 8 7 32 32 H 1.08996 * 109.46952 * 59.99873 * 9 8 7 33 33 H 0.96999 * 120.00061 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.46834 * 179.97438 * 18 2 1 35 35 H 1.08998 * 109.46973 * 299.99483 * 18 2 1 36 36 H 1.09000 * 109.46999 * 299.99749 * 19 18 2 37 37 H 1.09001 * 109.46982 * 179.97438 * 19 18 2 38 38 H 1.09006 * 109.47091 * 179.97438 * 20 19 18 39 39 H 1.08992 * 109.47325 * 60.00510 * 20 19 18 40 40 H 1.09000 * 109.47123 * 300.00172 * 21 20 19 41 41 H 1.08998 * 109.47032 * 180.02562 * 21 20 19 42 42 H 1.09000 * 109.47234 * 180.02562 * 22 21 20 43 43 H 1.09000 * 109.47267 * 59.99903 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 1.4354 2.2976 1.4811 5 8 2.0481 1.7670 2.6482 6 8 0.0279 2.4811 1.4114 7 7 2.0541 3.8285 1.3559 8 6 1.6254 4.7048 0.2629 9 6 2.0349 6.1458 0.5739 10 6 1.5933 7.0473 -0.5501 11 1 1.0730 6.6337 -1.4014 12 6 1.8535 8.4000 -0.4918 13 7 1.4686 9.1866 -1.4729 14 14 2.7529 9.1154 0.9810 15 1 4.2154 9.0974 0.7245 16 1 2.3063 10.5144 1.2019 17 1 2.4518 8.3033 2.1872 18 6 2.0400 -0.7213 1.2492 19 6 1.5300 -2.1638 1.2492 20 6 2.0400 -2.8849 0.0000 21 6 1.5300 -2.1637 -1.2493 22 6 2.0400 -0.7213 -1.2493 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.6766 1.9563 -0.8900 27 1 3.1300 1.4425 -0.0005 28 1 2.7005 4.1452 2.0062 29 1 2.0980 4.3851 -0.6658 30 1 0.5419 4.6498 0.1568 31 1 1.5622 6.4654 1.5026 32 1 3.1183 6.2007 0.6800 33 1 1.6520 10.1382 -1.4320 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -0.2074 2.1392 36 1 0.4400 -2.1638 1.2493 37 1 1.8938 -2.6777 2.1390 38 1 1.6771 -3.9128 0.0002 39 1 3.1299 -2.8850 -0.0001 40 1 0.4400 -2.1637 -1.2493 41 1 1.8929 -2.6778 -2.1392 42 1 1.6762 -0.2073 -2.1391 43 1 3.1300 -0.7213 -1.2494 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356213293.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:12 Heat of formation + Delta-G solvation = -128.733568 kcal Electronic energy + Delta-G solvation = -22114.976200 eV Core-core repulsion = 18898.993363 eV Total energy + Delta-G solvation = -3215.982837 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.52224 -38.21508 -37.13735 -36.97306 -34.71534 -34.37937 -31.74688 -31.48631 -28.69048 -27.58147 -26.38746 -23.64767 -22.75916 -22.28982 -20.38830 -19.44053 -19.05914 -18.53687 -17.33331 -17.25192 -16.37949 -16.17694 -15.92989 -15.66188 -15.44215 -15.40939 -14.91557 -14.63006 -14.14337 -13.88625 -13.66171 -13.51714 -13.40908 -13.17420 -13.07497 -13.03055 -12.87139 -12.59771 -12.52149 -12.26561 -12.08383 -11.93351 -11.82919 -11.81093 -11.70078 -11.45708 -11.10745 -11.03083 -10.81259 -10.75568 -10.28174 -8.29139 -6.34211 -0.70371 1.37217 1.40424 1.51044 1.77490 2.36560 2.76084 3.06532 3.20921 3.37374 3.59913 3.69623 4.04549 4.10636 4.20479 4.27140 4.34592 4.37257 4.46090 4.47037 4.59856 4.62672 4.68715 4.74318 4.80451 4.86362 4.90711 5.05876 5.08442 5.16240 5.23897 5.26780 5.32829 5.36486 5.41198 5.44180 5.44544 5.61717 5.62773 6.07477 6.26480 6.73740 7.30554 8.86896 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.033200 B = 0.003642 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.172905 B = 7686.749913 C = 8046.488841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.044 4.044 3 C -0.605 4.605 4 S 2.608 3.392 5 O -0.986 6.986 6 O -0.992 6.992 7 N -1.121 6.121 8 C 0.132 3.868 9 C -0.019 4.019 10 C -0.534 4.534 11 H 0.043 0.957 12 C 0.007 3.993 13 N -0.947 5.947 14 Si 0.947 3.053 15 H -0.262 1.262 16 H -0.287 1.287 17 H -0.249 1.249 18 C -0.148 4.148 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.099 4.099 23 H 0.071 0.929 24 H 0.090 0.910 25 H 0.051 0.949 26 H 0.150 0.850 27 H 0.160 0.840 28 H 0.419 0.581 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.022 0.978 32 H 0.036 0.964 33 H 0.267 0.733 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.029 -24.724 2.621 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.046 4.046 3 C -0.738 4.738 4 S 2.705 3.295 5 O -0.976 6.976 6 O -0.982 6.982 7 N -0.880 5.880 8 C 0.006 3.994 9 C -0.058 4.058 10 C -0.572 4.572 11 H 0.061 0.939 12 C -0.190 4.190 13 N -0.588 5.588 14 Si 0.770 3.230 15 H -0.187 1.187 16 H -0.213 1.213 17 H -0.172 1.172 18 C -0.185 4.185 19 C -0.159 4.159 20 C -0.155 4.155 21 C -0.161 4.161 22 C -0.138 4.138 23 H 0.090 0.910 24 H 0.109 0.891 25 H 0.070 0.930 26 H 0.168 0.832 27 H 0.178 0.822 28 H 0.254 0.746 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.327 -24.893 3.164 25.313 hybrid contribution 0.691 1.274 0.086 1.452 sum 4.019 -23.619 3.249 24.177 Atomic orbital electron populations 1.22537 0.94120 1.04409 1.03262 1.20314 0.95772 0.90002 0.98504 1.30583 1.14352 1.08169 1.20685 1.04856 0.74202 0.73206 0.77207 1.93534 1.78258 1.78812 1.47006 1.93546 1.31865 1.84853 1.87931 1.55454 1.61059 1.31287 1.40241 1.21190 0.99207 0.90773 0.88252 1.19698 0.97491 0.92291 0.96322 1.21325 1.37474 0.92896 1.05530 0.93874 1.25949 0.96340 0.97618 0.99097 1.70047 1.48810 1.05396 1.34520 0.85707 0.79353 0.77572 0.80322 1.18689 1.21318 1.17224 1.22148 1.02466 0.97774 0.96155 1.21586 1.01234 0.93998 0.99080 1.21550 1.01078 0.99111 0.93795 1.21634 1.01343 0.94739 0.98408 1.21565 1.01276 0.95671 0.95269 0.91024 0.89097 0.93036 0.83189 0.82241 0.74588 0.90344 0.92059 0.95998 0.94556 0.92420 0.90033 0.92357 0.91466 0.91164 0.90917 0.91578 0.91424 0.90637 0.90966 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.84 7.30 71.98 0.53 -3.31 16 2 C -0.04 -0.82 0.54 -52.18 -0.03 -0.85 16 3 C -0.60 -11.89 5.07 71.98 0.37 -11.52 16 4 S 2.61 74.34 4.49 -56.49 -0.25 74.09 16 5 O -0.99 -31.28 15.70 -127.65 -2.00 -33.28 16 6 O -0.99 -35.36 15.12 -127.65 -1.93 -37.29 16 7 N -1.12 -33.83 5.89 -187.48 -1.10 -34.94 16 8 C 0.13 4.76 6.07 86.38 0.52 5.29 16 9 C -0.02 -0.84 4.18 29.85 0.12 -0.72 16 10 C -0.53 -29.49 9.66 25.60 0.25 -29.24 16 11 H 0.04 2.58 7.99 -2.91 -0.02 2.56 16 12 C 0.01 0.42 5.47 84.65 0.46 0.88 16 13 N -0.95 -58.09 13.96 21.45 0.30 -57.79 16 14 Si 0.95 43.00 27.47 68.60 1.88 44.89 16 15 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 16 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.25 -10.55 6.54 99.48 0.65 -9.90 16 18 C -0.15 -2.86 4.26 30.59 0.13 -2.73 16 19 C -0.12 -1.88 5.65 30.59 0.17 -1.70 16 20 C -0.12 -1.43 5.92 30.59 0.18 -1.25 16 21 C -0.12 -1.51 5.65 30.59 0.17 -1.34 16 22 C -0.10 -1.42 4.73 30.59 0.14 -1.28 16 23 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.09 1.52 4.81 -2.39 -0.01 1.50 16 25 H 0.05 1.30 5.46 -2.39 -0.01 1.29 16 26 H 0.15 2.62 8.14 -2.39 -0.02 2.60 16 27 H 0.16 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.42 11.51 8.62 -96.75 -0.83 10.68 16 29 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 30 H 0.06 2.37 7.70 -2.38 -0.02 2.36 16 31 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 32 H 0.04 1.49 7.57 -2.39 -0.02 1.47 16 33 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 34 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.39 5.46 -2.39 -0.01 1.37 16 36 H 0.07 1.03 6.43 -2.39 -0.02 1.01 16 37 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 0.83 6.43 -2.39 -0.02 0.82 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -71.06 333.42 0.02 -71.04 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: 0.10 Total: 21.06 kcal Atomic # 6 Polarization: -50.80 SS G_CDS: 3.02 Total: -47.77 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -0.80 Total: -92.73 kcal Atomic # 8 Polarization: -66.64 SS G_CDS: -3.93 Total: -70.57 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 1.88 Total: 44.89 kcal Atomic # 16 Polarization: 74.34 SS G_CDS: -0.25 Total: 74.09 kcal Total: -71.06 0.02 -71.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356213293.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.692 kcal (2) G-P(sol) polarization free energy of solvation -71.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds