Wall clock time and date at job start Tue Mar 31 2020 06:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50699 * 119.99700 * 2 1 4 4 N 1.46506 * 109.47106 * 125.00371 * 3 2 1 5 5 C 1.46499 * 119.99537 * 270.00004 * 4 3 2 6 6 C 1.50697 * 109.46949 * 269.99553 * 5 4 3 7 7 H 1.08004 * 120.00186 * 0.02562 * 6 5 4 8 8 C 1.37881 * 120.00081 * 180.02562 * 6 5 4 9 9 N 1.31519 * 120.00096 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00103 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47135 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47061 * 119.99902 * 10 8 6 13 13 H 1.48503 * 109.47075 * 240.00004 * 10 8 6 14 14 C 1.34777 * 120.00264 * 89.99354 * 4 3 2 15 15 O 1.21283 * 119.99750 * 180.02562 * 14 4 3 16 16 C 1.50702 * 119.99928 * 0.28128 * 14 4 3 17 17 O 1.42899 * 109.46876 * 179.72354 * 16 14 4 18 18 C 1.35897 * 116.99793 * 179.97438 * 17 16 14 19 19 C 1.38763 * 120.05702 * 359.72171 * 18 17 16 20 20 C 1.38122 * 119.94152 * 179.69745 * 19 18 17 21 21 C 1.38283 * 120.05961 * 0.60477 * 20 19 18 22 22 C 1.38244 * 120.10851 * 359.66937 * 21 20 19 23 23 C 1.50704 * 119.97343 * 180.02562 * 22 21 20 24 24 C 1.38168 * 120.05720 * 0.02962 * 22 21 20 25 25 H 1.07992 * 119.99585 * 180.02562 * 1 2 3 26 26 H 1.07995 * 119.99516 * 359.97438 * 1 2 3 27 27 H 1.07999 * 120.00412 * 180.02562 * 2 1 3 28 28 H 1.08994 * 109.47456 * 5.00330 * 3 2 1 29 29 H 1.09001 * 109.47250 * 244.99774 * 3 2 1 30 30 H 1.09001 * 109.47567 * 29.99407 * 5 4 3 31 31 H 1.09005 * 109.47076 * 149.99913 * 5 4 3 32 32 H 0.96991 * 119.99957 * 180.02562 * 9 8 6 33 33 H 1.09004 * 109.46965 * 299.72211 * 16 14 4 34 34 H 1.08994 * 109.46990 * 59.72065 * 16 14 4 35 35 H 1.07995 * 120.02466 * 359.97438 * 19 18 17 36 36 H 1.08008 * 119.97008 * 180.29705 * 20 19 18 37 37 H 1.08001 * 119.94573 * 179.69726 * 21 20 19 38 38 H 1.09003 * 109.47556 * 270.02902 * 23 22 21 39 39 H 1.09006 * 109.46635 * 30.02706 * 23 22 21 40 40 H 1.08995 * 109.47103 * 150.02242 * 23 22 21 41 41 H 1.08002 * 120.02522 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3319 1.1314 5 6 2.5589 1.8649 2.4248 6 6 2.8443 3.3436 2.4804 7 1 3.3034 3.8371 1.6365 8 6 2.5194 4.0665 3.6086 9 7 1.9608 3.4656 4.6365 10 14 2.8725 5.8996 3.6772 11 1 3.5004 6.3308 2.4025 12 1 1.6020 6.6412 3.8794 13 1 3.7964 6.1838 4.8046 14 6 4.2498 0.8662 0.9824 15 8 5.0197 0.8880 1.9192 16 6 4.6991 0.3236 -0.3498 17 8 6.0608 -0.0995 -0.2570 18 6 6.6236 -0.6183 -1.3800 19 6 5.8785 -0.7234 -2.5459 20 6 6.4547 -1.2453 -3.6875 21 6 7.7691 -1.6744 -3.6660 22 6 8.5118 -1.5760 -2.5042 23 6 9.9441 -2.0440 -2.4843 24 6 7.9419 -1.0489 -1.3611 25 1 -0.5399 -0.9353 0.0004 26 1 -0.5399 0.9353 0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0896 29 1 2.6213 1.4027 -0.9314 30 1 1.4888 1.6967 2.5459 31 1 3.0990 1.3603 3.2260 32 1 1.7319 3.9742 5.4300 33 1 4.0730 -0.5248 -0.6265 34 1 4.6113 1.1022 -1.1075 35 1 4.8503 -0.3933 -2.5617 36 1 5.8766 -1.3229 -4.5966 37 1 8.2163 -2.0867 -4.5585 38 1 9.9788 -3.0962 -2.2018 39 1 10.3808 -1.9193 -3.4753 40 1 10.5088 -1.4550 -1.7617 41 1 8.5228 -0.9719 -0.4539 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359385331.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:44 Heat of formation + Delta-G solvation = -46.949362 kcal Electronic energy + Delta-G solvation = -22249.501491 eV Core-core repulsion = 18901.621132 eV Total energy + Delta-G solvation = -3347.880359 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.48580 -40.46154 -38.50905 -37.27184 -35.15190 -33.72593 -33.39799 -31.76972 -30.34202 -28.53619 -27.71636 -26.90939 -24.78762 -23.48444 -22.23709 -21.18640 -20.10447 -19.07576 -18.63399 -17.92359 -17.37657 -17.33627 -16.83473 -16.62733 -16.06134 -15.93349 -15.42606 -15.11210 -14.62647 -14.53615 -14.24386 -14.21448 -14.13605 -13.58346 -13.36926 -13.10041 -13.02450 -12.91287 -12.85965 -12.62643 -12.42474 -12.28681 -12.22475 -11.92076 -11.80883 -11.67622 -10.72629 -10.67076 -10.33780 -9.73614 -9.57606 -9.16439 -8.24950 -6.39581 0.37266 0.48892 1.25767 1.35358 1.38297 1.49412 1.60569 1.76046 2.36089 2.70872 2.80723 3.05334 3.46163 3.79591 3.94912 3.96949 3.99925 4.09087 4.21487 4.24125 4.36731 4.40676 4.45712 4.55674 4.82179 4.84205 4.88295 4.95237 5.01182 5.04855 5.18446 5.25603 5.37600 5.46058 5.50204 5.65829 5.70362 5.72584 5.86682 5.92292 6.02294 6.38264 6.60555 6.70079 7.20936 7.35616 8.82878 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.017970 B = 0.003649 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.743881 B = 7672.309232 C = 8673.505241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.189 4.189 3 C 0.128 3.872 4 N -0.590 5.590 5 C 0.265 3.735 6 C -0.545 4.545 7 H 0.055 0.945 8 C 0.008 3.992 9 N -0.927 5.927 10 Si 0.968 3.032 11 H -0.266 1.266 12 H -0.267 1.267 13 H -0.283 1.283 14 C 0.497 3.503 15 O -0.583 6.583 16 C 0.057 3.943 17 O -0.325 6.325 18 C 0.107 3.893 19 C -0.222 4.222 20 C -0.074 4.074 21 C -0.163 4.163 22 C -0.053 4.053 23 C -0.114 4.114 24 C -0.180 4.180 25 H 0.117 0.883 26 H 0.100 0.900 27 H 0.115 0.885 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.029 0.971 31 H -0.005 1.005 32 H 0.268 0.732 33 H 0.120 0.880 34 H 0.116 0.884 35 H 0.147 0.853 36 H 0.157 0.843 37 H 0.151 0.849 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.984 -10.936 -21.610 24.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.006 3.994 4 N -0.322 5.322 5 C 0.144 3.856 6 C -0.583 4.583 7 H 0.073 0.927 8 C -0.191 4.191 9 N -0.567 5.567 10 Si 0.793 3.207 11 H -0.191 1.191 12 H -0.192 1.192 13 H -0.209 1.209 14 C 0.284 3.716 15 O -0.463 6.463 16 C -0.020 4.020 17 O -0.239 6.239 18 C 0.063 3.937 19 C -0.241 4.241 20 C -0.092 4.092 21 C -0.180 4.180 22 C -0.053 4.053 23 C -0.170 4.170 24 C -0.199 4.199 25 H 0.135 0.865 26 H 0.119 0.881 27 H 0.133 0.867 28 H 0.103 0.897 29 H 0.128 0.872 30 H 0.047 0.953 31 H 0.014 0.986 32 H 0.076 0.924 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.164 0.836 36 H 0.174 0.826 37 H 0.169 0.831 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.387 -10.850 -20.750 24.027 hybrid contribution -0.158 1.000 0.962 1.397 sum 5.229 -9.850 -19.788 22.714 Atomic orbital electron populations 1.24074 0.95494 1.03006 0.97612 1.23316 0.96910 0.98111 1.02494 1.20967 0.92884 0.96851 0.88694 1.48129 1.10874 1.59476 1.13713 1.18757 0.94144 0.92759 0.79955 1.21738 1.40719 0.94308 1.01563 0.92659 1.25865 0.94599 1.03846 0.94802 1.70057 1.42768 1.38101 1.05773 0.85356 0.78260 0.78940 0.78182 1.19064 1.19187 1.20917 1.20761 0.82221 0.78447 0.90125 1.90680 1.54047 1.57591 1.44004 1.22591 0.82292 1.02066 0.95091 1.86134 1.27163 1.76415 1.34168 1.19414 0.93584 0.94881 0.85857 1.21536 1.01664 1.07881 0.92994 1.21334 0.95259 0.94806 0.97819 1.21335 0.94809 1.03442 0.98457 1.20045 0.97578 0.95615 0.92082 1.20873 0.90184 1.01942 1.04025 1.20517 0.93233 1.05885 1.00248 0.86516 0.88121 0.86727 0.89731 0.87239 0.95325 0.98648 0.92351 0.86224 0.86603 0.83579 0.82557 0.83096 0.89931 0.89347 0.91557 0.86431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 14.32 67.77 0.97 -2.68 16 2 C -0.19 -4.74 9.76 25.64 0.25 -4.49 16 3 C 0.13 3.78 5.66 85.63 0.48 4.27 16 4 N -0.59 -25.16 2.44 -830.49 -2.03 -27.18 16 5 C 0.26 14.44 5.16 85.63 0.44 14.88 16 6 C -0.54 -31.66 9.39 25.60 0.24 -31.42 16 7 H 0.06 3.17 7.81 -2.91 -0.02 3.15 16 8 C 0.01 0.46 5.46 84.66 0.46 0.93 16 9 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 10 Si 0.97 45.29 29.54 68.60 2.03 47.31 16 11 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 C 0.50 21.81 7.75 87.66 0.68 22.48 16 15 O -0.58 -32.87 16.08 16.00 0.26 -32.61 16 16 C 0.06 1.76 3.77 71.24 0.27 2.03 16 17 O -0.33 -11.68 9.67 -73.35 -0.71 -12.39 16 18 C 0.11 3.09 6.69 22.51 0.15 3.24 16 19 C -0.22 -4.75 9.04 22.37 0.20 -4.55 16 20 C -0.07 -1.24 10.04 22.25 0.22 -1.02 16 21 C -0.16 -2.69 9.70 22.28 0.22 -2.47 16 22 C -0.05 -1.07 5.88 -19.88 -0.12 -1.18 16 23 C -0.11 -1.58 10.01 71.24 0.71 -0.87 16 24 C -0.18 -4.85 9.64 22.36 0.22 -4.63 16 25 H 0.12 2.11 8.06 -2.91 -0.02 2.08 16 26 H 0.10 2.23 7.84 -2.91 -0.02 2.20 16 27 H 0.11 2.64 7.85 -2.91 -0.02 2.62 16 28 H 0.08 2.63 7.72 -2.39 -0.02 2.62 16 29 H 0.11 2.39 6.43 -2.39 -0.02 2.37 16 30 H 0.03 1.58 8.07 -2.39 -0.02 1.56 16 31 H 0.00 -0.29 7.42 -2.38 -0.02 -0.31 16 32 H 0.27 15.23 8.31 -92.72 -0.77 14.46 16 33 H 0.12 2.79 7.33 -2.38 -0.02 2.77 16 34 H 0.12 2.82 6.93 -2.39 -0.02 2.80 16 35 H 0.15 2.43 6.30 -2.91 -0.02 2.42 16 36 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 37 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 0.86 8.09 -2.38 -0.02 0.84 16 40 H 0.07 0.95 8.08 -2.39 -0.02 0.93 16 41 H 0.12 3.31 8.06 -2.91 -0.02 3.28 16 Total: -1.00 -79.88 353.15 6.24 -73.63 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 1.01 Total: 12.95 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: 5.40 Total: -5.48 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -1.74 Total: -83.42 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -0.45 Total: -45.00 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -79.88 6.24 -73.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359385331.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.686 kcal (2) G-P(sol) polarization free energy of solvation -79.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds