Wall clock time and date at job start Tue Mar 31 2020 05:42:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00195 * 2 1 4 4 H 1.48508 * 109.47082 * 270.00371 * 3 2 1 5 5 H 1.48504 * 109.46912 * 30.00104 * 3 2 1 6 6 H 1.48493 * 109.47092 * 150.00294 * 3 2 1 7 7 C 1.38798 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99806 * 179.97438 * 7 2 1 10 10 C 1.80997 * 99.99946 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46982 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46917 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47228 * 179.97438 * 12 11 10 14 14 C 1.46901 * 111.00309 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.47232 * 324.99813 * 14 13 12 16 16 C 1.52998 * 109.47003 * 84.99752 * 14 13 12 17 17 O 1.42898 * 109.47372 * 65.00292 * 16 14 13 18 18 C 1.53002 * 109.46988 * 205.00110 * 14 13 12 19 19 C 1.53177 * 109.53875 * 179.97438 * 18 14 13 20 20 C 1.53096 * 109.16164 * 183.14936 * 19 18 14 21 21 O 1.42908 * 109.41214 * 57.60571 * 20 19 18 22 22 C 1.42897 * 114.09789 * 298.84248 * 21 20 19 23 23 C 1.53090 * 109.41529 * 61.15937 * 22 21 20 24 24 H 0.97003 * 119.99741 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47566 * 59.99612 * 10 9 7 26 26 H 1.09002 * 109.47049 * 299.99441 * 10 9 7 27 27 H 1.08997 * 109.47514 * 59.99803 * 11 10 9 28 28 H 1.08993 * 109.47032 * 299.99211 * 11 10 9 29 29 H 1.08999 * 109.47435 * 59.99376 * 12 11 10 30 30 H 1.09002 * 109.47246 * 299.99165 * 12 11 10 31 31 H 1.00901 * 110.99763 * 56.04045 * 13 12 11 32 32 H 1.09002 * 109.47031 * 185.00233 * 16 14 13 33 33 H 1.08994 * 109.47154 * 304.99919 * 16 14 13 34 34 H 0.96695 * 114.00736 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.61364 * 300.21627 * 18 14 13 36 36 H 1.09003 * 109.52410 * 63.24757 * 19 18 14 37 37 H 1.08994 * 109.57348 * 303.08372 * 19 18 14 38 38 H 1.08993 * 109.48033 * 177.59323 * 20 19 18 39 39 H 1.09001 * 109.48095 * 297.62604 * 20 19 18 40 40 H 1.09002 * 109.48246 * 301.17405 * 22 21 20 41 41 H 1.09006 * 109.47919 * 181.14281 * 22 21 20 42 42 H 1.09002 * 109.52149 * 182.47952 * 23 22 21 43 43 H 1.09007 * 109.52293 * 62.29456 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0025 11 6 5.5957 -3.2364 -0.0026 12 6 5.8613 -4.7432 -0.0031 13 7 7.3103 -4.9850 -0.0038 14 6 7.6038 -6.4244 -0.0037 15 1 6.8520 -6.9485 0.5863 16 6 7.5817 -6.9495 -1.4406 17 8 8.6431 -6.3473 -2.1842 18 6 8.9871 -6.6627 0.6053 19 6 9.2946 -8.1632 0.6068 20 6 10.6449 -8.3988 1.2887 21 8 10.6062 -7.8683 2.6150 22 6 10.3692 -6.4603 2.6736 23 6 9.0079 -6.1469 2.0474 24 1 -0.4850 0.8401 0.0004 25 1 3.6432 -3.4311 -0.8926 26 1 3.6440 -3.4322 0.8874 27 1 6.0386 -2.7900 0.8876 28 1 6.0386 -2.7888 -0.8923 29 1 5.4182 -5.1900 -0.8931 30 1 5.4185 -5.1905 0.8868 31 1 7.7539 -4.5257 0.7774 32 1 7.7113 -8.0318 -1.4339 33 1 6.6269 -6.7007 -1.9036 34 1 8.6900 -6.6350 -3.1062 35 1 9.7405 -6.1363 0.0192 36 1 9.3364 -8.5276 -0.4197 37 1 8.5142 -8.6953 1.1507 38 1 10.8491 -9.4686 1.3308 39 1 11.4307 -7.9007 0.7207 40 1 11.1514 -5.9368 2.1238 41 1 10.3749 -6.1337 3.7135 42 1 8.8446 -5.0692 2.0512 43 1 8.2214 -6.6375 2.6210 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359881195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:11 Heat of formation + Delta-G solvation = -120.363208 kcal Electronic energy + Delta-G solvation = -20979.665114 eV Core-core repulsion = 17764.045243 eV Total energy + Delta-G solvation = -3215.619871 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.08464 -37.93807 -35.99790 -34.45658 -32.43607 -31.93167 -31.44315 -28.61016 -25.87039 -25.54922 -24.48566 -23.56461 -21.31599 -21.15336 -20.06463 -17.54644 -17.43652 -16.93337 -16.32450 -15.92626 -15.28213 -15.04068 -14.97295 -14.85249 -14.76748 -14.14730 -13.84622 -13.66539 -13.37901 -12.88350 -12.78984 -12.59591 -12.18538 -12.00207 -11.80943 -11.65343 -11.46393 -11.12389 -11.04125 -11.03326 -10.73734 -10.53910 -10.50348 -10.15113 -10.04537 -9.81867 -9.72135 -9.00094 -8.55501 -8.45457 -6.93562 -6.28143 -4.00221 3.01077 3.30826 3.46143 3.54265 3.57609 3.95443 4.15505 4.31488 4.32262 4.44963 4.54467 4.67389 4.81356 4.87396 5.02036 5.04523 5.10537 5.14272 5.17848 5.23893 5.26045 5.33766 5.36432 5.44786 5.54251 5.56567 5.58843 5.64457 5.75343 5.77175 5.81848 6.00361 6.11220 6.22762 6.49475 6.64196 6.87070 6.99055 7.31508 7.53600 7.95711 8.44317 9.17873 10.81382 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030013 B = 0.002662 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.709877 B =10516.143127 C =10932.857685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.091 3.909 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.238 1.238 7 C -0.502 4.502 8 H 0.087 0.913 9 S -0.215 6.215 10 C -0.081 4.081 11 C -0.098 4.098 12 C 0.062 3.938 13 N -0.677 5.677 14 C 0.095 3.905 15 H 0.054 0.946 16 C 0.087 3.913 17 O -0.555 6.555 18 C -0.086 4.086 19 C -0.149 4.149 20 C 0.062 3.938 21 O -0.385 6.385 22 C 0.063 3.937 23 C -0.158 4.158 24 H 0.270 0.730 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.028 0.972 31 H 0.341 0.659 32 H 0.043 0.957 33 H 0.045 0.955 34 H 0.371 0.629 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.122 -17.487 0.592 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.162 1.162 7 C -0.649 4.649 8 H 0.105 0.895 9 S 0.013 5.987 10 C -0.230 4.230 11 C -0.137 4.137 12 C -0.068 4.068 13 N -0.310 5.310 14 C -0.015 4.015 15 H 0.072 0.928 16 C 0.009 3.991 17 O -0.359 6.359 18 C -0.104 4.104 19 C -0.187 4.187 20 C -0.015 4.015 21 O -0.304 6.304 22 C -0.014 4.014 23 C -0.196 4.196 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.162 0.838 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.217 0.783 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 21.851 -16.248 0.666 27.238 hybrid contribution -1.408 -0.567 0.049 1.518 sum 20.443 -16.815 0.715 26.480 Atomic orbital electron populations 1.69944 1.05930 1.27697 1.48380 1.24806 0.94523 0.99043 0.93355 0.86657 0.81727 0.83155 0.79728 1.19352 1.20130 1.16165 1.22131 0.87140 0.97384 1.58294 0.89467 1.84168 1.11598 1.05451 1.97519 1.23003 0.97345 0.99146 1.03542 1.21284 0.94910 0.94267 1.03198 1.22074 0.87403 0.97072 1.00277 1.60472 1.10732 1.09431 1.50360 1.21584 0.96064 0.89601 0.94295 0.92790 1.22183 0.90206 0.94645 0.92115 1.86563 1.52464 1.70748 1.26147 1.21239 0.97861 0.96024 0.95316 1.22242 0.98542 0.96360 1.01528 1.22564 0.96111 0.99232 0.83604 1.87927 1.92648 1.22673 1.27177 1.22549 0.95430 0.81830 1.01562 1.22339 0.98947 1.01897 0.96457 0.91990 0.91465 0.91631 0.91788 0.90591 0.91173 0.95353 0.83849 0.93899 0.93698 0.78328 0.89074 0.90555 0.91285 0.89023 0.93098 0.93002 0.88834 0.90504 0.91142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.98 13.97 55.49 0.78 -26.20 16 2 C 0.09 2.68 5.50 -17.43 -0.10 2.58 16 3 Si 0.86 21.75 27.74 -169.99 -4.71 17.03 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 7 C -0.50 -14.71 10.04 30.94 0.31 -14.40 16 8 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 9 S -0.22 -5.31 19.41 -107.50 -2.09 -7.40 16 10 C -0.08 -1.59 5.67 37.16 0.21 -1.38 16 11 C -0.10 -1.53 5.48 -26.73 -0.15 -1.67 16 12 C 0.06 0.80 5.48 -3.82 -0.02 0.78 16 13 N -0.68 -7.81 6.26 -106.72 -0.67 -8.48 16 14 C 0.09 0.92 2.02 -67.71 -0.14 0.78 16 15 H 0.05 0.52 7.80 -51.93 -0.40 0.12 16 16 C 0.09 0.79 6.30 37.16 0.23 1.02 16 17 O -0.56 -5.37 12.74 -35.23 -0.45 -5.81 16 18 C -0.09 -0.74 1.79 -90.44 -0.16 -0.90 16 19 C -0.15 -1.11 4.97 -26.59 -0.13 -1.24 16 20 C 0.06 0.47 6.84 37.21 0.25 0.72 16 21 O -0.39 -3.74 10.77 -35.23 -0.38 -4.12 16 22 C 0.06 0.51 6.84 37.20 0.25 0.77 16 23 C -0.16 -1.31 5.11 -26.60 -0.14 -1.45 16 24 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.07 1.32 8.14 -51.92 -0.42 0.90 16 26 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 27 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 0.91 7.36 -51.93 -0.38 0.53 16 30 H 0.03 0.36 8.06 -51.93 -0.42 -0.06 16 31 H 0.34 3.72 6.25 -39.29 -0.25 3.48 16 32 H 0.04 0.31 6.79 -51.93 -0.35 -0.05 16 33 H 0.04 0.44 7.35 -51.93 -0.38 0.06 16 34 H 0.37 2.09 9.12 45.56 0.42 2.51 16 35 H 0.09 0.93 7.57 -51.93 -0.39 0.54 16 36 H 0.08 0.51 6.74 -51.93 -0.35 0.16 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.61 6.37 -51.93 -0.33 0.28 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 349.06 15.07 5.26 5.26 Total: -1.00 -32.83 349.06 -8.48 -41.31 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -6.65 Total: 2.80 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 0.43 Total: -14.39 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.11 Total: -34.68 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.83 Total: -9.93 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -2.09 Total: -7.40 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -32.83 -8.48 -41.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359881195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.058 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds