Wall clock time and date at job start Tue Mar 31 2020 05:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00195 * 2 1 4 4 H 1.48508 * 109.47082 * 270.00371 * 3 2 1 5 5 H 1.48504 * 109.46912 * 30.00104 * 3 2 1 6 6 H 1.48493 * 109.47092 * 150.00294 * 3 2 1 7 7 C 1.38798 * 119.99643 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99806 * 179.97438 * 7 2 1 10 10 C 1.80997 * 99.99946 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46982 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.46917 * 179.97438 * 11 10 9 13 13 N 1.46904 * 109.47228 * 179.97438 * 12 11 10 14 14 C 1.46901 * 111.00309 * 179.97438 * 13 12 11 15 15 H 1.09001 * 109.47232 * 324.99813 * 14 13 12 16 16 C 1.52998 * 109.47003 * 84.99752 * 14 13 12 17 17 O 1.42898 * 109.47372 * 65.00292 * 16 14 13 18 18 C 1.53002 * 109.46988 * 205.00110 * 14 13 12 19 19 C 1.53177 * 109.53875 * 179.97438 * 18 14 13 20 20 C 1.53096 * 109.16164 * 183.14936 * 19 18 14 21 21 O 1.42908 * 109.41214 * 57.60571 * 20 19 18 22 22 C 1.42897 * 114.09789 * 298.84248 * 21 20 19 23 23 C 1.53090 * 109.41529 * 61.15937 * 22 21 20 24 24 H 0.97003 * 119.99741 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47566 * 59.99612 * 10 9 7 26 26 H 1.09002 * 109.47049 * 299.99441 * 10 9 7 27 27 H 1.08997 * 109.47514 * 59.99803 * 11 10 9 28 28 H 1.08993 * 109.47032 * 299.99211 * 11 10 9 29 29 H 1.08999 * 109.47435 * 59.99376 * 12 11 10 30 30 H 1.09002 * 109.47246 * 299.99165 * 12 11 10 31 31 H 1.00901 * 110.99763 * 56.04045 * 13 12 11 32 32 H 1.09002 * 109.47031 * 185.00233 * 16 14 13 33 33 H 1.08994 * 109.47154 * 304.99919 * 16 14 13 34 34 H 0.96695 * 114.00736 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.61364 * 300.21627 * 18 14 13 36 36 H 1.09003 * 109.52410 * 63.24757 * 19 18 14 37 37 H 1.08994 * 109.57348 * 303.08372 * 19 18 14 38 38 H 1.08993 * 109.48033 * 177.59323 * 20 19 18 39 39 H 1.09001 * 109.48095 * 297.62604 * 20 19 18 40 40 H 1.09002 * 109.48246 * 301.17405 * 22 21 20 41 41 H 1.09006 * 109.47919 * 181.14281 * 22 21 20 42 42 H 1.09002 * 109.52149 * 182.47952 * 23 22 21 43 43 H 1.09007 * 109.52293 * 62.29456 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0865 -2.9846 -0.0025 11 6 5.5957 -3.2364 -0.0026 12 6 5.8613 -4.7432 -0.0031 13 7 7.3103 -4.9850 -0.0038 14 6 7.6038 -6.4244 -0.0037 15 1 6.8520 -6.9485 0.5863 16 6 7.5817 -6.9495 -1.4406 17 8 8.6431 -6.3473 -2.1842 18 6 8.9871 -6.6627 0.6053 19 6 9.2946 -8.1632 0.6068 20 6 10.6449 -8.3988 1.2887 21 8 10.6062 -7.8683 2.6150 22 6 10.3692 -6.4603 2.6736 23 6 9.0079 -6.1469 2.0474 24 1 -0.4850 0.8401 0.0004 25 1 3.6432 -3.4311 -0.8926 26 1 3.6440 -3.4322 0.8874 27 1 6.0386 -2.7900 0.8876 28 1 6.0386 -2.7888 -0.8923 29 1 5.4182 -5.1900 -0.8931 30 1 5.4185 -5.1905 0.8868 31 1 7.7539 -4.5257 0.7774 32 1 7.7113 -8.0318 -1.4339 33 1 6.6269 -6.7007 -1.9036 34 1 8.6900 -6.6350 -3.1062 35 1 9.7405 -6.1363 0.0192 36 1 9.3364 -8.5276 -0.4197 37 1 8.5142 -8.6953 1.1507 38 1 10.8491 -9.4686 1.3308 39 1 11.4307 -7.9007 0.7207 40 1 11.1514 -5.9368 2.1238 41 1 10.3749 -6.1337 3.7135 42 1 8.8446 -5.0692 2.0512 43 1 8.2214 -6.6375 2.6210 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359881195.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:10 Heat of formation + Delta-G solvation = -145.318399 kcal Electronic energy + Delta-G solvation = -20980.747252 eV Core-core repulsion = 17764.045243 eV Total energy + Delta-G solvation = -3216.702009 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.75813 -38.69331 -36.86773 -35.36082 -34.69683 -32.95933 -32.06730 -29.47947 -27.98111 -26.55210 -25.44968 -24.23940 -22.50725 -21.90615 -20.79855 -19.61222 -18.21903 -17.70370 -17.12327 -16.96111 -16.76858 -16.40834 -16.09536 -15.70695 -15.58082 -15.26562 -14.93229 -14.75086 -14.49690 -14.35048 -13.85211 -13.45125 -13.38591 -13.19273 -13.13639 -12.99798 -12.67252 -12.37849 -12.24140 -12.06979 -11.89524 -11.77135 -11.64240 -11.28533 -11.17393 -11.14889 -10.74065 -10.57893 -10.43843 -9.35248 -9.00404 -8.53184 -6.24553 1.11676 1.31610 1.47283 1.73315 2.24094 2.67272 2.84856 2.95160 3.10247 3.48146 3.65523 3.80378 3.90530 3.97459 4.07475 4.16421 4.24871 4.29804 4.39086 4.40680 4.45561 4.54037 4.58086 4.63622 4.69931 4.73246 4.78268 4.81260 4.90828 4.92462 4.94950 5.13114 5.15332 5.18046 5.26319 5.43976 5.68504 6.08591 6.08853 6.26802 6.44246 6.90921 7.02955 8.59971 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030013 B = 0.002662 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.709877 B =10516.143127 C =10932.857685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.037 3.963 3 Si 0.927 3.073 4 H -0.262 1.262 5 H -0.262 1.262 6 H -0.229 1.229 7 C -0.522 4.522 8 H 0.050 0.950 9 S -0.221 6.221 10 C -0.069 4.069 11 C -0.085 4.085 12 C 0.074 3.926 13 N -0.683 5.683 14 C 0.092 3.908 15 H 0.056 0.944 16 C 0.087 3.913 17 O -0.573 6.573 18 C -0.078 4.078 19 C -0.143 4.143 20 C 0.058 3.942 21 O -0.405 6.405 22 C 0.061 3.939 23 C -0.156 4.156 24 H 0.277 0.723 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.034 0.966 31 H 0.344 0.656 32 H 0.064 0.936 33 H 0.036 0.964 34 H 0.387 0.613 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.067 0.933 38 H 0.105 0.895 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.069 -17.769 0.590 29.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.168 4.168 3 Si 0.748 3.252 4 H -0.186 1.186 5 H -0.187 1.187 6 H -0.152 1.152 7 C -0.670 4.670 8 H 0.068 0.932 9 S 0.007 5.993 10 C -0.218 4.218 11 C -0.124 4.124 12 C -0.057 4.057 13 N -0.316 5.316 14 C -0.018 4.018 15 H 0.074 0.926 16 C 0.008 3.992 17 O -0.380 6.380 18 C -0.097 4.097 19 C -0.181 4.181 20 C -0.019 4.019 21 O -0.325 6.325 22 C -0.016 4.016 23 C -0.194 4.194 24 H 0.086 0.914 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.165 0.835 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.236 0.764 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.120 0.880 42 H 0.097 0.903 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 23.803 -16.549 0.653 28.998 hybrid contribution -2.007 -0.617 0.024 2.100 sum 21.797 -17.166 0.676 27.753 Atomic orbital electron populations 1.70042 1.07654 1.29134 1.49251 1.25800 0.95444 1.02819 0.92733 0.85697 0.80748 0.78555 0.80237 1.18620 1.18682 1.15221 1.22344 0.90099 0.96236 1.58322 0.93178 1.83867 1.07503 1.10333 1.97560 1.23066 1.00270 0.95023 1.03413 1.21160 0.91590 0.96450 1.03172 1.21868 0.88579 0.94713 1.00575 1.60452 1.09570 1.10904 1.50708 1.21675 0.96652 0.88342 0.95086 0.92574 1.22199 0.89689 0.95797 0.91480 1.86516 1.52554 1.71318 1.27607 1.21138 0.96727 0.96748 0.95066 1.22203 0.98461 0.95368 1.02103 1.22704 0.96217 1.00073 0.82875 1.87901 1.92749 1.23378 1.28423 1.22628 0.95371 0.81380 1.02194 1.22308 0.98933 1.01922 0.96199 0.91378 0.91747 0.91631 0.91205 0.91168 0.91247 0.94763 0.83495 0.91767 0.94616 0.76443 0.90430 0.89555 0.91401 0.87656 0.92759 0.92586 0.88041 0.90321 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.27 13.97 21.65 0.30 -56.97 16 2 C 0.04 2.18 5.50 84.86 0.47 2.64 16 3 Si 0.93 44.54 27.74 68.60 1.90 46.44 16 4 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 5 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 6 H -0.23 -10.59 6.74 99.48 0.67 -9.92 16 7 C -0.52 -31.17 10.04 67.95 0.68 -30.49 16 8 H 0.05 3.25 8.03 -2.91 -0.02 3.22 16 9 S -0.22 -10.75 19.41 -56.49 -1.10 -11.85 16 10 C -0.07 -2.64 5.67 71.98 0.41 -2.23 16 11 C -0.08 -2.51 5.48 30.59 0.17 -2.34 16 12 C 0.07 1.77 5.48 86.30 0.47 2.24 16 13 N -0.68 -14.57 6.26 -491.56 -3.08 -17.64 16 14 C 0.09 1.62 2.02 44.92 0.09 1.71 16 15 H 0.06 0.98 7.80 -2.39 -0.02 0.96 16 16 C 0.09 1.40 6.30 71.98 0.45 1.85 16 17 O -0.57 -10.02 12.74 -148.98 -1.90 -11.91 16 18 C -0.08 -1.22 1.79 -10.68 -0.02 -1.24 16 19 C -0.14 -1.86 4.97 30.69 0.15 -1.70 16 20 C 0.06 0.77 6.84 72.01 0.49 1.26 16 21 O -0.41 -7.29 10.77 -148.98 -1.60 -8.89 16 22 C 0.06 0.90 6.84 72.01 0.49 1.40 16 23 C -0.16 -2.35 5.11 30.68 0.16 -2.20 16 24 H 0.28 15.80 8.31 -92.71 -0.77 15.03 16 25 H 0.06 2.51 8.14 -2.40 -0.02 2.49 16 26 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 27 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.07 1.70 7.36 -2.39 -0.02 1.68 16 30 H 0.03 0.79 8.06 -2.39 -0.02 0.77 16 31 H 0.34 6.90 6.25 -89.69 -0.56 6.34 16 32 H 0.06 0.76 6.79 -2.39 -0.02 0.74 16 33 H 0.04 0.64 7.35 -2.39 -0.02 0.62 16 34 H 0.39 3.65 9.12 -74.06 -0.68 2.97 16 35 H 0.08 1.46 7.57 -2.39 -0.02 1.44 16 36 H 0.09 0.95 6.74 -2.39 -0.02 0.93 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.08 1.14 6.37 -2.39 -0.02 1.13 16 43 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -70.12 349.06 -1.73 -71.85 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -0.28 Total: 18.07 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 4.02 Total: -29.09 kcal Atomic # 7 Polarization: -71.84 SS G_CDS: -2.77 Total: -74.61 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -3.50 Total: -20.81 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.90 Total: 46.44 kcal Atomic # 16 Polarization: -10.75 SS G_CDS: -1.10 Total: -11.85 kcal Total: -70.12 -1.73 -71.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359881195.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.469 kcal (2) G-P(sol) polarization free energy of solvation -70.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds