Wall clock time and date at job start Tue Mar 31 2020 06:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 119.99677 * 2 1 4 4 H 1.09000 * 110.81835 * 176.66084 * 3 2 1 5 5 C 1.54893 * 110.75534 * 53.32487 * 3 2 1 6 6 C 1.54266 * 104.19500 * 203.74291 * 5 3 2 7 7 C 1.53872 * 106.60044 * 23.61099 * 6 5 3 8 8 C 1.53001 * 110.03682 * 240.71773 * 7 6 5 9 9 C 1.52997 * 110.03323 * 119.28544 * 7 6 5 10 10 C 1.54266 * 106.59640 * 359.97438 * 7 6 5 11 11 S 1.65599 * 120.00313 * 179.97438 * 2 1 3 12 12 O 1.42103 * 104.27309 * 26.07598 * 11 2 1 13 13 O 1.42095 * 104.27235 * 153.92935 * 11 2 1 14 14 C 1.81397 * 104.45021 * 270.00533 * 11 2 1 15 15 C 1.52996 * 109.47045 * 180.02562 * 14 11 2 16 16 C 1.50702 * 109.47474 * 179.97438 * 15 14 11 17 17 H 1.08007 * 119.99416 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00173 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00183 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99788 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47469 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47171 * 120.00275 * 20 18 16 23 23 H 1.48509 * 109.47253 * 239.99821 * 20 18 16 24 24 H 1.09005 * 109.46850 * 90.00564 * 1 2 3 25 25 H 1.09003 * 109.47149 * 209.99872 * 1 2 3 26 26 H 1.08994 * 109.47518 * 330.00048 * 1 2 3 27 27 H 1.09002 * 110.48578 * 85.06769 * 5 3 2 28 28 H 1.09001 * 110.49013 * 322.42210 * 5 3 2 29 29 H 1.09002 * 110.02957 * 264.32709 * 6 5 3 30 30 H 1.08996 * 110.03427 * 142.89930 * 6 5 3 31 31 H 1.08995 * 109.47235 * 177.16569 * 8 7 6 32 32 H 1.09004 * 109.46961 * 297.16936 * 8 7 6 33 33 H 1.08999 * 109.46929 * 57.15838 * 8 7 6 34 34 H 1.09007 * 109.47145 * 302.83034 * 9 7 6 35 35 H 1.08995 * 109.47613 * 62.83340 * 9 7 6 36 36 H 1.09004 * 109.47317 * 182.83629 * 9 7 6 37 37 H 1.09001 * 110.48620 * 95.07012 * 10 7 6 38 38 H 1.09004 * 110.48798 * 217.70845 * 10 7 6 39 39 H 1.09001 * 109.47162 * 299.99686 * 14 11 2 40 40 H 1.08998 * 109.47231 * 59.99589 * 14 11 2 41 41 H 1.09001 * 109.46718 * 299.99755 * 15 14 11 42 42 H 1.08998 * 109.47608 * 59.99616 * 15 14 11 43 43 H 0.97000 * 119.99744 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 1 3.2720 1.0958 0.0593 5 6 1.7226 2.1767 1.1617 6 6 2.0794 3.6037 0.6966 7 6 2.1570 3.5589 -0.8395 8 6 3.5621 3.9462 -1.3049 9 6 1.1230 4.5105 -1.4444 10 6 1.8454 2.1061 -1.2543 11 16 2.2931 -1.4341 0.0006 12 8 1.3970 -2.3563 -0.6043 13 8 3.5395 -1.1192 -0.6047 14 6 2.5193 -1.8254 1.7574 15 6 3.2820 -3.1449 1.8919 16 6 3.4705 -3.4697 3.3513 17 1 3.0852 -2.8015 4.1074 18 6 4.1347 -4.6198 3.7214 19 7 4.6035 -5.4337 2.8007 20 14 4.3690 -5.0220 5.5305 21 1 3.7541 -3.9538 6.3588 22 1 3.7198 -6.3219 5.8366 23 1 5.8200 -5.1097 5.8342 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 2.2552 1.9305 2.0803 28 1 0.6465 2.0803 1.3059 29 1 3.0428 3.9014 1.1107 30 1 1.3051 4.3034 1.0111 31 1 3.6213 3.8629 -2.3900 32 1 3.7731 4.9734 -1.0072 33 1 4.2929 3.2785 -0.8487 34 1 0.1288 4.2417 -1.0872 35 1 1.3520 5.5335 -1.1459 36 1 1.1512 4.4344 -2.5315 37 1 0.7890 1.9978 -1.5003 38 1 2.4670 1.8087 -2.0988 39 1 3.0865 -1.0278 2.2372 40 1 1.5451 -1.9178 2.2374 41 1 2.7150 -3.9426 1.4120 42 1 4.2562 -3.0521 1.4119 43 1 5.0711 -6.2426 3.0612 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360383643.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:22 Heat of formation + Delta-G solvation = -98.683543 kcal Electronic energy + Delta-G solvation = -22167.450651 eV Core-core repulsion = 18952.770881 eV Total energy + Delta-G solvation = -3214.679770 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.52500 -36.61054 -35.62947 -35.30576 -33.88016 -31.24753 -31.14402 -28.64877 -27.47039 -26.32371 -25.53929 -24.14244 -21.64523 -20.40399 -18.88027 -18.48346 -17.63966 -16.56769 -16.14513 -15.45143 -15.26550 -14.90201 -14.54596 -14.05070 -13.79181 -13.72720 -13.58151 -13.35318 -13.30341 -12.54755 -12.44759 -12.23397 -12.05721 -11.76074 -11.74358 -11.56399 -11.42802 -11.35973 -11.14700 -11.09103 -10.94887 -10.84927 -10.70674 -10.60744 -10.43750 -10.38159 -10.35110 -9.74762 -9.28360 -8.69275 -8.50499 -6.12257 -4.17761 0.78297 3.04051 3.25245 3.32488 3.35944 4.28205 4.34684 4.41872 4.46575 4.53444 4.68241 4.90072 5.12441 5.14472 5.21569 5.22940 5.29000 5.31068 5.43862 5.46994 5.54030 5.61990 5.65558 5.67831 5.72826 5.76757 5.81112 5.85038 5.88034 5.96930 5.98469 6.08708 6.21627 6.29937 6.39799 6.50495 6.75123 7.30741 7.36711 7.80975 8.18052 8.85899 9.47036 10.98827 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025279 B = 0.003966 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.385308 B = 7057.475287 C = 7439.055733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -1.002 6.002 3 C 0.143 3.857 4 H 0.107 0.893 5 C -0.139 4.139 6 C -0.114 4.114 7 C -0.070 4.070 8 C -0.141 4.141 9 C -0.137 4.137 10 C -0.123 4.123 11 S 2.589 3.411 12 O -0.964 6.964 13 O -0.964 6.964 14 C -0.589 4.589 15 C 0.027 3.973 16 C -0.519 4.519 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.669 19.632 -5.585 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.837 5.837 3 C 0.037 3.963 4 H 0.125 0.875 5 C -0.178 4.178 6 C -0.152 4.152 7 C -0.071 4.071 8 C -0.198 4.198 9 C -0.194 4.194 10 C -0.163 4.163 11 S 2.688 3.312 12 O -0.954 6.954 13 O -0.955 6.955 14 C -0.723 4.723 15 C -0.012 4.012 16 C -0.558 4.558 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.339 19.002 -6.434 21.362 hybrid contribution 0.020 -0.122 1.639 1.644 sum -7.319 18.881 -4.795 20.810 Atomic orbital electron populations 1.21385 0.79171 1.02728 1.01880 1.57677 1.14743 1.21161 1.90098 1.21855 0.96702 0.82787 0.94983 0.87480 1.22775 1.02082 0.94565 0.98403 1.22241 1.01836 0.96689 0.94427 1.21138 0.95755 0.94981 0.95233 1.21945 0.95651 1.01092 1.01149 1.21895 0.98278 0.98638 1.00578 1.22812 1.02116 0.93318 0.98024 1.05767 0.73629 0.72557 0.79275 1.93536 1.64797 1.62012 1.75094 1.93527 1.43983 1.82833 1.75111 1.30489 1.10147 1.10567 1.21073 1.18968 0.94959 0.87235 1.00003 1.21043 1.36975 1.07005 0.90824 0.92012 1.25073 0.95328 0.96103 0.98021 1.69969 1.37361 1.12667 1.32858 0.86417 0.77974 0.78369 0.84544 1.19652 1.20790 1.20787 0.92815 0.91008 0.91131 0.90974 0.90676 0.91392 0.91597 0.92666 0.92793 0.92140 0.92679 0.92813 0.92779 0.90872 0.91019 0.86338 0.86342 0.94895 0.94876 0.92588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 9.14 59.85 0.55 1.60 16 2 N -1.00 -13.84 3.13 -112.49 -0.35 -14.19 16 3 C 0.14 1.75 3.20 -65.95 -0.21 1.54 16 4 H 0.11 1.43 7.05 -51.93 -0.37 1.07 16 5 C -0.14 -1.37 6.36 -25.07 -0.16 -1.53 16 6 C -0.11 -0.97 6.11 -25.61 -0.16 -1.13 16 7 C -0.07 -0.62 0.94 -153.39 -0.14 -0.76 16 8 C -0.14 -1.22 8.14 37.16 0.30 -0.92 16 9 C -0.14 -1.02 8.15 37.16 0.30 -0.72 16 10 C -0.12 -1.33 5.48 -25.09 -0.14 -1.46 16 11 S 2.59 47.75 5.37 -107.50 -0.58 47.17 16 12 O -0.96 -20.39 17.09 -57.54 -0.98 -21.37 16 13 O -0.96 -20.23 16.65 -57.54 -0.96 -21.18 16 14 C -0.59 -11.46 6.12 37.16 0.23 -11.23 16 15 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 16 C -0.52 -14.43 9.11 -34.44 -0.31 -14.75 16 17 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 20 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H 0.05 0.58 8.10 -51.93 -0.42 0.16 16 25 H 0.07 0.81 7.79 -51.93 -0.40 0.40 16 26 H 0.07 0.61 5.96 -51.93 -0.31 0.30 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.67 5.98 -51.93 -0.31 0.36 16 29 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 30 H 0.07 0.50 7.67 -51.93 -0.40 0.10 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.74 7.00 -51.93 -0.36 0.38 16 38 H 0.07 0.83 7.84 -51.93 -0.41 0.42 16 39 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 40 H 0.12 2.07 8.14 -51.93 -0.42 1.65 16 41 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 350.25 15.07 5.28 5.28 Total: -1.00 -33.74 350.25 -9.43 -43.16 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -7.57 Total: -1.97 kcal Atomic # 6 Polarization: -27.28 SS G_CDS: 0.02 Total: -27.26 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.38 Total: -40.06 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: -1.94 Total: -42.56 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 47.75 SS G_CDS: -0.58 Total: 47.17 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.74 -9.43 -43.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360383643.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.519 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds