Wall clock time and date at job start Tue Mar 31 2020 06:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 119.99677 * 2 1 4 4 H 1.09000 * 110.81835 * 176.66084 * 3 2 1 5 5 C 1.54893 * 110.75534 * 53.32487 * 3 2 1 6 6 C 1.54266 * 104.19500 * 203.74291 * 5 3 2 7 7 C 1.53872 * 106.60044 * 23.61099 * 6 5 3 8 8 C 1.53001 * 110.03682 * 240.71773 * 7 6 5 9 9 C 1.52997 * 110.03323 * 119.28544 * 7 6 5 10 10 C 1.54266 * 106.59640 * 359.97438 * 7 6 5 11 11 S 1.65599 * 120.00313 * 179.97438 * 2 1 3 12 12 O 1.42103 * 104.27309 * 26.07598 * 11 2 1 13 13 O 1.42095 * 104.27235 * 153.92935 * 11 2 1 14 14 C 1.81397 * 104.45021 * 270.00533 * 11 2 1 15 15 C 1.52996 * 109.47045 * 180.02562 * 14 11 2 16 16 C 1.50702 * 109.47474 * 179.97438 * 15 14 11 17 17 H 1.08007 * 119.99416 * 359.97438 * 16 15 14 18 18 C 1.37870 * 120.00173 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00183 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99788 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47469 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47171 * 120.00275 * 20 18 16 23 23 H 1.48509 * 109.47253 * 239.99821 * 20 18 16 24 24 H 1.09005 * 109.46850 * 90.00564 * 1 2 3 25 25 H 1.09003 * 109.47149 * 209.99872 * 1 2 3 26 26 H 1.08994 * 109.47518 * 330.00048 * 1 2 3 27 27 H 1.09002 * 110.48578 * 85.06769 * 5 3 2 28 28 H 1.09001 * 110.49013 * 322.42210 * 5 3 2 29 29 H 1.09002 * 110.02957 * 264.32709 * 6 5 3 30 30 H 1.08996 * 110.03427 * 142.89930 * 6 5 3 31 31 H 1.08995 * 109.47235 * 177.16569 * 8 7 6 32 32 H 1.09004 * 109.46961 * 297.16936 * 8 7 6 33 33 H 1.08999 * 109.46929 * 57.15838 * 8 7 6 34 34 H 1.09007 * 109.47145 * 302.83034 * 9 7 6 35 35 H 1.08995 * 109.47613 * 62.83340 * 9 7 6 36 36 H 1.09004 * 109.47317 * 182.83629 * 9 7 6 37 37 H 1.09001 * 110.48620 * 95.07012 * 10 7 6 38 38 H 1.09004 * 110.48798 * 217.70845 * 10 7 6 39 39 H 1.09001 * 109.47162 * 299.99686 * 14 11 2 40 40 H 1.08998 * 109.47231 * 59.99589 * 14 11 2 41 41 H 1.09001 * 109.46718 * 299.99755 * 15 14 11 42 42 H 1.08998 * 109.47608 * 59.99616 * 15 14 11 43 43 H 0.97000 * 119.99744 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 1 3.2720 1.0958 0.0593 5 6 1.7226 2.1767 1.1617 6 6 2.0794 3.6037 0.6966 7 6 2.1570 3.5589 -0.8395 8 6 3.5621 3.9462 -1.3049 9 6 1.1230 4.5105 -1.4444 10 6 1.8454 2.1061 -1.2543 11 16 2.2931 -1.4341 0.0006 12 8 1.3970 -2.3563 -0.6043 13 8 3.5395 -1.1192 -0.6047 14 6 2.5193 -1.8254 1.7574 15 6 3.2820 -3.1449 1.8919 16 6 3.4705 -3.4697 3.3513 17 1 3.0852 -2.8015 4.1074 18 6 4.1347 -4.6198 3.7214 19 7 4.6035 -5.4337 2.8007 20 14 4.3690 -5.0220 5.5305 21 1 3.7541 -3.9538 6.3588 22 1 3.7198 -6.3219 5.8366 23 1 5.8200 -5.1097 5.8342 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 2.2552 1.9305 2.0803 28 1 0.6465 2.0803 1.3059 29 1 3.0428 3.9014 1.1107 30 1 1.3051 4.3034 1.0111 31 1 3.6213 3.8629 -2.3900 32 1 3.7731 4.9734 -1.0072 33 1 4.2929 3.2785 -0.8487 34 1 0.1288 4.2417 -1.0872 35 1 1.3520 5.5335 -1.1459 36 1 1.1512 4.4344 -2.5315 37 1 0.7890 1.9978 -1.5003 38 1 2.4670 1.8087 -2.0988 39 1 3.0865 -1.0278 2.2372 40 1 1.5451 -1.9178 2.2374 41 1 2.7150 -3.9426 1.4120 42 1 4.2562 -3.0521 1.4119 43 1 5.0711 -6.2426 3.0612 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360383643.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:21 Heat of formation + Delta-G solvation = -120.929758 kcal Electronic energy + Delta-G solvation = -22168.415320 eV Core-core repulsion = 18952.770881 eV Total energy + Delta-G solvation = -3215.644439 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.33724 -38.21783 -37.05511 -36.45822 -35.90712 -33.13981 -32.02876 -29.46802 -28.10537 -27.66865 -27.16901 -24.93452 -23.55474 -21.41675 -19.80114 -19.59046 -19.16419 -18.40837 -17.39751 -17.08301 -16.55873 -16.17229 -16.07269 -15.17531 -14.87641 -14.66276 -14.50552 -14.43579 -14.33114 -14.06753 -13.74449 -13.62167 -13.27422 -13.18348 -12.96089 -12.87437 -12.79368 -12.66680 -12.51923 -12.27547 -12.20632 -12.16207 -12.09791 -11.75211 -11.59022 -11.41339 -11.33220 -11.21749 -11.07164 -10.66915 -9.84370 -8.27184 -6.41638 -0.72156 1.40344 1.41142 1.54557 1.73383 2.37276 2.84155 3.06090 3.16112 3.52370 3.65263 3.85753 3.95373 4.07925 4.10340 4.36328 4.38980 4.42185 4.53355 4.60756 4.65623 4.69962 4.74069 4.83839 4.91445 4.92301 5.00993 5.04406 5.07749 5.19609 5.24103 5.24534 5.25040 5.28407 5.44523 5.47491 5.52182 5.62722 5.67010 5.73770 6.04598 6.72127 7.28775 8.85384 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.025279 B = 0.003966 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.385308 B = 7057.475287 C = 7439.055733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.990 5.990 3 C 0.130 3.870 4 H 0.089 0.911 5 C -0.135 4.135 6 C -0.110 4.110 7 C -0.068 4.068 8 C -0.143 4.143 9 C -0.133 4.133 10 C -0.124 4.124 11 S 2.609 3.391 12 O -0.994 6.994 13 O -0.995 6.995 14 C -0.586 4.586 15 C 0.020 3.980 16 C -0.538 4.538 17 H 0.076 0.924 18 C -0.005 4.005 19 N -0.935 5.935 20 Si 0.976 3.024 21 H -0.255 1.255 22 H -0.277 1.277 23 H -0.278 1.278 24 H 0.059 0.941 25 H 0.071 0.929 26 H 0.105 0.895 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.046 0.954 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.054 0.946 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.005 0.995 42 H 0.005 0.995 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.187 22.038 -3.963 24.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.828 5.828 3 C 0.024 3.976 4 H 0.107 0.893 5 C -0.174 4.174 6 C -0.148 4.148 7 C -0.069 4.069 8 C -0.200 4.200 9 C -0.191 4.191 10 C -0.163 4.163 11 S 2.707 3.293 12 O -0.984 6.984 13 O -0.986 6.986 14 C -0.718 4.718 15 C -0.019 4.019 16 C -0.577 4.577 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.574 5.574 20 Si 0.799 3.201 21 H -0.178 1.178 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.123 0.877 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.157 0.843 40 H 0.159 0.841 41 H 0.024 0.976 42 H 0.023 0.977 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.861 21.413 -4.807 23.667 hybrid contribution 0.474 -0.813 1.052 1.411 sum -8.387 20.600 -3.755 22.556 Atomic orbital electron populations 1.21708 0.77067 1.04484 1.02923 1.57280 1.15841 1.19913 1.89736 1.22107 0.95811 0.82300 0.97349 0.89339 1.22785 1.02944 0.94504 0.97129 1.22246 1.02602 0.96130 0.93864 1.21133 0.96125 0.93872 0.95727 1.21964 0.95483 1.01601 1.00979 1.21869 0.98028 0.98745 1.00422 1.22835 1.02348 0.94417 0.96697 1.04850 0.72916 0.73143 0.78380 1.93488 1.65386 1.64049 1.75525 1.93480 1.45970 1.83555 1.75568 1.30376 1.10687 1.07712 1.23055 1.18825 0.94093 0.89895 0.99056 1.21538 1.36793 1.07410 0.91954 0.90588 1.26143 0.94889 0.95984 1.03295 1.70116 1.38398 1.13364 1.35568 0.85240 0.78054 0.78512 0.78291 1.17850 1.20300 1.20331 0.92258 0.90981 0.87655 0.90968 0.89115 0.91264 0.89759 0.92877 0.91393 0.93490 0.91953 0.91730 0.92954 0.89876 0.92685 0.84317 0.84060 0.97646 0.97713 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.66 9.14 127.77 1.17 2.83 16 2 N -0.99 -26.19 3.13 -509.82 -1.60 -27.78 16 3 C 0.13 3.02 3.20 46.27 0.15 3.17 16 4 H 0.09 2.39 7.05 -2.39 -0.02 2.37 16 5 C -0.13 -2.26 6.36 31.67 0.20 -2.06 16 6 C -0.11 -1.55 6.11 31.32 0.19 -1.35 16 7 C -0.07 -1.05 0.94 -51.46 -0.05 -1.09 16 8 C -0.14 -2.30 8.14 71.98 0.59 -1.71 16 9 C -0.13 -1.60 8.15 71.98 0.59 -1.01 16 10 C -0.12 -2.48 5.48 31.66 0.17 -2.31 16 11 S 2.61 97.70 5.37 -56.49 -0.30 97.40 16 12 O -0.99 -42.90 17.09 -127.65 -2.18 -45.08 16 13 O -1.00 -43.29 16.65 -127.65 -2.13 -45.41 16 14 C -0.59 -22.78 6.12 71.98 0.44 -22.34 16 15 C 0.02 1.08 4.98 29.85 0.15 1.23 16 16 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 17 H 0.08 3.93 7.74 -2.91 -0.02 3.90 16 18 C 0.00 -0.28 5.46 84.65 0.46 0.19 16 19 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 20 Si 0.98 43.45 29.54 68.60 2.03 45.48 16 21 H -0.25 -10.55 7.11 99.48 0.71 -9.84 16 22 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 H 0.06 1.15 8.10 -2.38 -0.02 1.13 16 25 H 0.07 1.47 7.79 -2.39 -0.02 1.46 16 26 H 0.11 1.40 5.96 -2.39 -0.01 1.39 16 27 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.09 1.24 5.98 -2.39 -0.01 1.23 16 29 H 0.07 0.97 7.67 -2.39 -0.02 0.95 16 30 H 0.08 0.92 7.67 -2.39 -0.02 0.90 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.08 1.49 7.00 -2.39 -0.02 1.47 16 38 H 0.05 1.27 7.84 -2.38 -0.02 1.25 16 39 H 0.14 4.76 8.14 -2.39 -0.02 4.74 16 40 H 0.14 4.77 8.14 -2.39 -0.02 4.75 16 41 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 43 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -74.59 350.25 1.35 -73.23 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: 0.96 Total: 13.68 kcal Atomic # 6 Polarization: -58.67 SS G_CDS: 4.29 Total: -54.38 kcal Atomic # 7 Polarization: -83.60 SS G_CDS: -1.31 Total: -84.91 kcal Atomic # 8 Polarization: -86.19 SS G_CDS: -4.31 Total: -90.50 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Atomic # 16 Polarization: 97.70 SS G_CDS: -0.30 Total: 97.40 kcal Total: -74.59 1.35 -73.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360383643.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.697 kcal (2) G-P(sol) polarization free energy of solvation -74.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds