Wall clock time and date at job start Tue Mar 31 2020 06:58:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00058 * 2 1 4 4 H 1.09000 * 110.43343 * 180.70213 * 3 2 1 5 5 C 1.54893 * 110.48640 * 303.24483 * 3 2 1 6 6 C 1.55028 * 102.68279 * 156.51784 * 5 3 2 7 7 C 1.54267 * 104.27855 * 322.22973 * 6 5 3 8 8 C 1.52999 * 110.03230 * 264.23120 * 7 6 5 9 9 C 1.53000 * 110.02996 * 142.80355 * 7 6 5 10 10 C 1.53872 * 106.59990 * 23.52133 * 7 6 5 11 11 S 1.65600 * 119.99771 * 180.02562 * 2 1 3 12 12 O 1.42101 * 104.27882 * 333.92564 * 11 2 1 13 13 O 1.42102 * 104.27187 * 206.06939 * 11 2 1 14 14 C 1.81399 * 104.45301 * 89.99902 * 11 2 1 15 15 C 1.52996 * 109.47218 * 179.97438 * 14 11 2 16 16 C 1.50696 * 109.47142 * 180.02562 * 15 14 11 17 17 H 1.07998 * 120.00056 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00096 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99899 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00143 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47205 * 59.99647 * 20 18 16 22 22 H 1.48494 * 109.47106 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46903 * 299.99491 * 20 18 16 24 24 H 1.08996 * 109.47176 * 270.00030 * 1 2 3 25 25 H 1.09001 * 109.47329 * 29.99935 * 1 2 3 26 26 H 1.09000 * 109.47199 * 149.99620 * 1 2 3 27 27 H 1.09000 * 110.75326 * 274.93426 * 5 3 2 28 28 H 1.08993 * 110.75606 * 38.30278 * 5 3 2 29 29 H 1.08999 * 110.52237 * 203.48657 * 6 5 3 30 30 H 1.08999 * 110.47608 * 80.95470 * 6 5 3 31 31 H 1.09001 * 109.47004 * 177.16558 * 8 7 6 32 32 H 1.08997 * 109.47613 * 297.17390 * 8 7 6 33 33 H 1.09000 * 109.46639 * 57.17098 * 8 7 6 34 34 H 1.09002 * 109.47274 * 302.83275 * 9 7 6 35 35 H 1.09008 * 109.47061 * 62.83246 * 9 7 6 36 36 H 1.08992 * 109.47173 * 182.83372 * 9 7 6 37 37 H 1.09003 * 110.03139 * 240.71452 * 10 7 6 38 38 H 1.08997 * 110.07310 * 119.30217 * 10 7 6 39 39 H 1.09001 * 109.46838 * 300.00058 * 14 11 2 40 40 H 1.08998 * 109.46934 * 59.99858 * 14 11 2 41 41 H 1.09004 * 109.47227 * 300.00383 * 15 14 11 42 42 H 1.09001 * 109.46834 * 59.99744 * 15 14 11 43 43 H 0.97002 * 120.00322 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2723 1.0876 -0.0125 5 6 1.7797 2.1359 -1.2135 6 6 2.1316 3.5708 -0.7437 7 6 1.7653 3.5811 0.7548 8 6 0.3597 4.1540 0.9468 9 6 2.7827 4.4140 1.5372 10 6 1.8072 2.1175 1.2277 11 16 2.2930 -1.4342 -0.0006 12 8 1.3969 -2.3564 0.6042 13 8 3.5394 -1.1193 0.6047 14 6 2.5193 -1.8255 -1.7574 15 6 3.2818 -3.1451 -1.8918 16 6 3.4704 -3.4698 -3.3513 17 1 3.0845 -2.8021 -4.1073 18 6 4.1346 -4.6200 -3.7214 19 7 4.6041 -5.4334 -2.8007 20 14 4.3677 -5.0229 -5.5304 21 1 5.1405 -3.9363 -6.1841 22 1 5.1080 -6.3036 -5.6609 23 1 3.0405 -5.1490 -6.1845 24 1 -0.3633 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 2.3554 1.8648 -2.0985 28 1 0.7105 2.0442 -1.4039 29 1 1.5386 4.3068 -1.2865 30 1 3.1957 3.7657 -0.8778 31 1 0.0906 4.1105 2.0022 32 1 0.3403 5.1902 0.6091 33 1 -0.3534 3.5692 0.3657 34 1 3.7830 4.0131 1.3738 35 1 2.7454 5.4484 1.1952 36 1 2.5445 4.3739 2.6001 37 1 0.8261 1.8152 1.5939 38 1 2.5519 1.9998 2.0148 39 1 1.5450 -1.9178 -2.2375 40 1 3.0866 -1.0279 -2.2371 41 1 4.2561 -3.0523 -1.4118 42 1 2.7149 -3.9428 -1.4120 43 1 5.0717 -6.2424 -3.0610 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360383644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:25 Heat of formation + Delta-G solvation = -98.519286 kcal Electronic energy + Delta-G solvation = -22178.773469 eV Core-core repulsion = 18964.100822 eV Total energy + Delta-G solvation = -3214.672648 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.54225 -36.61040 -35.61240 -35.29195 -33.87679 -31.26079 -31.14093 -28.62557 -27.49986 -26.32196 -25.53490 -24.12988 -21.64363 -20.41313 -18.92655 -18.45325 -17.63746 -16.57297 -16.12689 -15.47630 -15.22002 -14.91944 -14.54769 -14.17270 -14.01074 -13.62961 -13.44358 -13.35518 -13.11979 -12.53246 -12.44200 -12.26581 -12.13010 -11.74637 -11.70046 -11.58472 -11.49289 -11.38733 -11.10287 -11.06141 -10.95683 -10.90209 -10.68389 -10.58577 -10.47379 -10.38151 -10.36403 -9.74099 -9.30321 -8.69965 -8.49558 -6.11700 -4.17405 0.78643 3.04683 3.27390 3.32181 3.34010 4.28313 4.34949 4.42135 4.44706 4.54148 4.67310 4.90186 5.12787 5.15912 5.20184 5.23228 5.29884 5.31276 5.41279 5.46967 5.54076 5.60603 5.65840 5.67699 5.71760 5.75079 5.82509 5.84639 5.85786 5.94582 5.98070 6.07685 6.22345 6.27929 6.40001 6.50727 6.76013 7.30778 7.37033 7.80993 8.18407 8.85753 9.47202 10.99315 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026139 B = 0.003942 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.930470 B = 7101.093785 C = 7503.013952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -1.003 6.003 3 C 0.143 3.857 4 H 0.106 0.894 5 C -0.139 4.139 6 C -0.114 4.114 7 C -0.070 4.070 8 C -0.136 4.136 9 C -0.140 4.140 10 C -0.126 4.126 11 S 2.589 3.411 12 O -0.964 6.964 13 O -0.965 6.965 14 C -0.589 4.589 15 C 0.028 3.972 16 C -0.521 4.521 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.891 5.891 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.127 19.643 5.448 21.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.838 5.838 3 C 0.037 3.963 4 H 0.124 0.876 5 C -0.178 4.178 6 C -0.152 4.152 7 C -0.070 4.070 8 C -0.193 4.193 9 C -0.197 4.197 10 C -0.165 4.165 11 S 2.688 3.312 12 O -0.955 6.955 13 O -0.955 6.955 14 C -0.723 4.723 15 C -0.011 4.011 16 C -0.560 4.560 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.529 5.529 20 Si 0.727 3.273 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.793 19.003 6.310 21.486 hybrid contribution 0.005 -0.115 -1.631 1.636 sum -7.788 18.888 4.679 20.959 Atomic orbital electron populations 1.21364 0.79201 1.02687 1.01821 1.57716 1.14715 1.21203 1.90145 1.21757 0.96805 0.82904 0.94852 0.87582 1.22943 1.02186 0.94700 0.97977 1.22467 1.01527 0.96636 0.94587 1.21145 0.95604 0.94907 0.95377 1.21894 0.95662 1.00337 1.01457 1.21931 0.98744 0.99349 0.99715 1.22634 1.02660 0.93263 0.97922 1.05763 0.73629 0.72572 0.79275 1.93535 1.64792 1.62036 1.75100 1.93526 1.43999 1.82844 1.75131 1.30487 1.10138 1.10564 1.21062 1.18956 0.94947 0.87228 0.99954 1.20967 1.37164 1.07068 0.90809 0.92115 1.25069 0.95305 0.96082 0.98008 1.69945 1.37216 1.12691 1.33019 0.86529 0.78379 0.77747 0.84609 1.20079 1.21061 1.20080 0.92845 0.91209 0.91013 0.90839 0.90595 0.91460 0.91177 0.92806 0.92868 0.92592 0.92311 0.92839 0.92762 0.90791 0.91081 0.86349 0.86331 0.94891 0.94916 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.07 9.05 59.85 0.54 1.61 16 2 N -1.00 -13.82 3.10 -112.83 -0.35 -14.17 16 3 C 0.14 1.75 3.19 -66.27 -0.21 1.53 16 4 H 0.11 1.42 6.96 -51.93 -0.36 1.06 16 5 C -0.14 -1.37 6.44 -24.66 -0.16 -1.53 16 6 C -0.11 -0.97 5.90 -25.00 -0.15 -1.12 16 7 C -0.07 -0.60 0.94 -153.39 -0.14 -0.74 16 8 C -0.14 -1.02 8.15 37.16 0.30 -0.72 16 9 C -0.14 -1.12 8.16 37.16 0.30 -0.81 16 10 C -0.13 -1.34 5.74 -25.61 -0.15 -1.49 16 11 S 2.59 47.74 5.37 -107.50 -0.58 47.17 16 12 O -0.96 -20.40 17.09 -57.54 -0.98 -21.38 16 13 O -0.96 -20.27 16.61 -57.54 -0.96 -21.22 16 14 C -0.59 -11.45 6.12 37.16 0.23 -11.22 16 15 C 0.03 0.73 4.98 -27.89 -0.14 0.59 16 16 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 17 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 19 N -0.89 -26.64 13.29 55.43 0.74 -25.90 16 20 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 24 H 0.05 0.58 7.89 -51.93 -0.41 0.17 16 25 H 0.07 0.60 6.16 -51.93 -0.32 0.28 16 26 H 0.07 0.81 7.79 -51.93 -0.40 0.40 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.69 6.17 -51.93 -0.32 0.37 16 29 H 0.07 0.51 7.84 -51.93 -0.41 0.10 16 30 H 0.07 0.59 7.83 -51.93 -0.41 0.18 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 35 H 0.05 0.38 8.14 -51.92 -0.42 -0.05 16 36 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.77 6.44 -51.93 -0.33 0.44 16 38 H 0.07 0.80 7.67 -51.93 -0.40 0.40 16 39 H 0.12 2.07 8.14 -51.92 -0.42 1.65 16 40 H 0.12 2.08 8.14 -51.92 -0.42 1.65 16 41 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 349.88 15.07 5.27 5.27 Total: -1.00 -33.73 349.88 -9.41 -43.14 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -7.55 Total: -2.00 kcal Atomic # 6 Polarization: -27.16 SS G_CDS: 0.02 Total: -27.14 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.39 Total: -40.07 kcal Atomic # 8 Polarization: -40.67 SS G_CDS: -1.94 Total: -42.61 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 47.74 SS G_CDS: -0.58 Total: 47.17 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.73 -9.41 -43.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360383644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.376 kcal (2) G-P(sol) polarization free energy of solvation -33.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds