Wall clock time and date at job start Tue Mar 31 2020 06:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00058 * 2 1 4 4 H 1.09000 * 110.43343 * 180.70213 * 3 2 1 5 5 C 1.54893 * 110.48640 * 303.24483 * 3 2 1 6 6 C 1.55028 * 102.68279 * 156.51784 * 5 3 2 7 7 C 1.54267 * 104.27855 * 322.22973 * 6 5 3 8 8 C 1.52999 * 110.03230 * 264.23120 * 7 6 5 9 9 C 1.53000 * 110.02996 * 142.80355 * 7 6 5 10 10 C 1.53872 * 106.59990 * 23.52133 * 7 6 5 11 11 S 1.65600 * 119.99771 * 180.02562 * 2 1 3 12 12 O 1.42101 * 104.27882 * 333.92564 * 11 2 1 13 13 O 1.42102 * 104.27187 * 206.06939 * 11 2 1 14 14 C 1.81399 * 104.45301 * 89.99902 * 11 2 1 15 15 C 1.52996 * 109.47218 * 179.97438 * 14 11 2 16 16 C 1.50696 * 109.47142 * 180.02562 * 15 14 11 17 17 H 1.07998 * 120.00056 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00096 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99899 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00143 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47205 * 59.99647 * 20 18 16 22 22 H 1.48494 * 109.47106 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.46903 * 299.99491 * 20 18 16 24 24 H 1.08996 * 109.47176 * 270.00030 * 1 2 3 25 25 H 1.09001 * 109.47329 * 29.99935 * 1 2 3 26 26 H 1.09000 * 109.47199 * 149.99620 * 1 2 3 27 27 H 1.09000 * 110.75326 * 274.93426 * 5 3 2 28 28 H 1.08993 * 110.75606 * 38.30278 * 5 3 2 29 29 H 1.08999 * 110.52237 * 203.48657 * 6 5 3 30 30 H 1.08999 * 110.47608 * 80.95470 * 6 5 3 31 31 H 1.09001 * 109.47004 * 177.16558 * 8 7 6 32 32 H 1.08997 * 109.47613 * 297.17390 * 8 7 6 33 33 H 1.09000 * 109.46639 * 57.17098 * 8 7 6 34 34 H 1.09002 * 109.47274 * 302.83275 * 9 7 6 35 35 H 1.09008 * 109.47061 * 62.83246 * 9 7 6 36 36 H 1.08992 * 109.47173 * 182.83372 * 9 7 6 37 37 H 1.09003 * 110.03139 * 240.71452 * 10 7 6 38 38 H 1.08997 * 110.07310 * 119.30217 * 10 7 6 39 39 H 1.09001 * 109.46838 * 300.00058 * 14 11 2 40 40 H 1.08998 * 109.46934 * 59.99858 * 14 11 2 41 41 H 1.09004 * 109.47227 * 300.00383 * 15 14 11 42 42 H 1.09001 * 109.46834 * 59.99744 * 15 14 11 43 43 H 0.97002 * 120.00322 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 1 3.2723 1.0876 -0.0125 5 6 1.7797 2.1359 -1.2135 6 6 2.1316 3.5708 -0.7437 7 6 1.7653 3.5811 0.7548 8 6 0.3597 4.1540 0.9468 9 6 2.7827 4.4140 1.5372 10 6 1.8072 2.1175 1.2277 11 16 2.2930 -1.4342 -0.0006 12 8 1.3969 -2.3564 0.6042 13 8 3.5394 -1.1193 0.6047 14 6 2.5193 -1.8255 -1.7574 15 6 3.2818 -3.1451 -1.8918 16 6 3.4704 -3.4698 -3.3513 17 1 3.0845 -2.8021 -4.1073 18 6 4.1346 -4.6200 -3.7214 19 7 4.6041 -5.4334 -2.8007 20 14 4.3677 -5.0229 -5.5304 21 1 5.1405 -3.9363 -6.1841 22 1 5.1080 -6.3036 -5.6609 23 1 3.0405 -5.1490 -6.1845 24 1 -0.3633 0.0000 1.0276 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3633 -0.8899 -0.5139 27 1 2.3554 1.8648 -2.0985 28 1 0.7105 2.0442 -1.4039 29 1 1.5386 4.3068 -1.2865 30 1 3.1957 3.7657 -0.8778 31 1 0.0906 4.1105 2.0022 32 1 0.3403 5.1902 0.6091 33 1 -0.3534 3.5692 0.3657 34 1 3.7830 4.0131 1.3738 35 1 2.7454 5.4484 1.1952 36 1 2.5445 4.3739 2.6001 37 1 0.8261 1.8152 1.5939 38 1 2.5519 1.9998 2.0148 39 1 1.5450 -1.9178 -2.2375 40 1 3.0866 -1.0279 -2.2371 41 1 4.2561 -3.0523 -1.4118 42 1 2.7149 -3.9428 -1.4120 43 1 5.0717 -6.2424 -3.0610 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360383644.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:24 Heat of formation + Delta-G solvation = -120.744450 kcal Electronic energy + Delta-G solvation = -22179.737225 eV Core-core repulsion = 18964.100822 eV Total energy + Delta-G solvation = -3215.636403 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34878 -38.21842 -37.05374 -36.42173 -35.90327 -33.13788 -32.03599 -29.44555 -28.09332 -27.66103 -27.16611 -24.91747 -23.55114 -21.42041 -19.84938 -19.55685 -19.15155 -18.41188 -17.39044 -17.08440 -16.56310 -16.16473 -16.03065 -15.20851 -14.95361 -14.77410 -14.50657 -14.42754 -14.22520 -13.87837 -13.74546 -13.58417 -13.25928 -13.15876 -12.91624 -12.89478 -12.80783 -12.73439 -12.48651 -12.24709 -12.23226 -12.16220 -12.12166 -11.75729 -11.63476 -11.35036 -11.31138 -11.25063 -11.09584 -10.64937 -9.85398 -8.26654 -6.41336 -0.71853 1.40307 1.44088 1.52315 1.73878 2.37669 2.84354 3.06391 3.16348 3.53111 3.64752 3.86101 3.96602 4.08261 4.11371 4.35741 4.37942 4.46724 4.54379 4.61109 4.63595 4.70206 4.74190 4.86444 4.91069 4.93211 5.01093 5.06102 5.08942 5.20170 5.23249 5.24767 5.25121 5.29153 5.44547 5.49368 5.51675 5.63346 5.66917 5.74351 6.04869 6.72014 7.28966 8.85509 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.026139 B = 0.003942 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.930470 B = 7101.093785 C = 7503.013952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.990 5.990 3 C 0.131 3.869 4 H 0.087 0.913 5 C -0.135 4.135 6 C -0.111 4.111 7 C -0.067 4.067 8 C -0.134 4.134 9 C -0.140 4.140 10 C -0.126 4.126 11 S 2.608 3.392 12 O -0.995 6.995 13 O -0.996 6.996 14 C -0.586 4.586 15 C 0.021 3.979 16 C -0.540 4.540 17 H 0.076 0.924 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.975 3.025 21 H -0.263 1.263 22 H -0.284 1.284 23 H -0.262 1.262 24 H 0.058 0.942 25 H 0.104 0.896 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.049 0.951 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.004 0.996 42 H 0.005 0.995 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.623 21.992 3.791 24.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.828 5.828 3 C 0.025 3.975 4 H 0.106 0.894 5 C -0.174 4.174 6 C -0.149 4.149 7 C -0.067 4.067 8 C -0.191 4.191 9 C -0.198 4.198 10 C -0.165 4.165 11 S 2.707 3.293 12 O -0.985 6.985 13 O -0.986 6.986 14 C -0.718 4.718 15 C -0.018 4.018 16 C -0.579 4.579 17 H 0.094 0.906 18 C -0.203 4.203 19 N -0.574 5.574 20 Si 0.799 3.201 21 H -0.187 1.187 22 H -0.209 1.209 23 H -0.187 1.187 24 H 0.077 0.923 25 H 0.122 0.878 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.294 21.357 4.647 23.751 hybrid contribution 0.448 -0.785 -1.033 1.372 sum -8.846 20.572 3.614 22.683 Atomic orbital electron populations 1.21681 0.77120 1.04420 1.02853 1.57322 1.15798 1.19943 1.89784 1.22009 0.95853 0.82372 0.97218 0.89447 1.22955 1.03049 0.94772 0.96613 1.22476 1.01847 0.96099 0.94470 1.21134 0.96710 0.93393 0.95470 1.21877 0.94610 1.00968 1.01655 1.21932 0.98128 0.99944 0.99771 1.22657 1.02385 0.94611 0.96886 1.04845 0.72911 0.73154 0.78384 1.93487 1.65382 1.64072 1.75536 1.93479 1.45990 1.83567 1.75595 1.30373 1.10683 1.07704 1.23030 1.18814 0.94075 0.89896 0.99018 1.21484 1.36975 1.07498 0.91970 0.90570 1.26144 0.94850 0.95953 1.03304 1.70101 1.38277 1.13352 1.35713 0.85346 0.78902 0.77661 0.78239 1.18710 1.20939 1.18672 0.92297 0.87785 0.90973 0.90875 0.89099 0.89669 0.91341 0.92831 0.91749 0.92135 0.93192 0.91549 0.92757 0.90329 0.92401 0.84061 0.84287 0.97742 0.97684 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.69 9.05 127.77 1.16 2.84 16 2 N -0.99 -26.15 3.10 -510.89 -1.59 -27.73 16 3 C 0.13 3.04 3.19 46.07 0.15 3.19 16 4 H 0.09 2.36 6.96 -2.39 -0.02 2.34 16 5 C -0.13 -2.29 6.44 31.94 0.21 -2.08 16 6 C -0.11 -1.57 5.90 31.72 0.19 -1.38 16 7 C -0.07 -0.99 0.94 -51.46 -0.05 -1.03 16 8 C -0.13 -1.57 8.15 71.98 0.59 -0.99 16 9 C -0.14 -2.00 8.16 71.98 0.59 -1.41 16 10 C -0.13 -2.52 5.74 31.32 0.18 -2.34 16 11 S 2.61 97.59 5.37 -56.49 -0.30 97.28 16 12 O -0.99 -42.90 17.09 -127.65 -2.18 -45.08 16 13 O -1.00 -43.30 16.61 -127.65 -2.12 -45.42 16 14 C -0.59 -22.73 6.12 71.98 0.44 -22.29 16 15 C 0.02 1.11 4.98 29.85 0.15 1.26 16 16 C -0.54 -30.27 9.11 25.60 0.23 -30.03 16 17 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 18 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 19 N -0.94 -57.48 13.29 21.45 0.28 -57.20 16 20 Si 0.98 43.38 29.54 68.60 2.03 45.41 16 21 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 24 H 0.06 1.15 7.89 -2.39 -0.02 1.13 16 25 H 0.10 1.40 6.16 -2.39 -0.01 1.39 16 26 H 0.07 1.48 7.79 -2.39 -0.02 1.46 16 27 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.09 1.27 6.17 -2.39 -0.01 1.26 16 29 H 0.08 0.94 7.84 -2.39 -0.02 0.93 16 30 H 0.07 1.00 7.83 -2.39 -0.02 0.98 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 34 H 0.05 0.79 8.12 -2.39 -0.02 0.77 16 35 H 0.07 0.77 8.14 -2.38 -0.02 0.76 16 36 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 1.48 6.44 -2.39 -0.02 1.47 16 38 H 0.06 1.29 7.67 -2.39 -0.02 1.27 16 39 H 0.14 4.76 8.14 -2.39 -0.02 4.75 16 40 H 0.14 4.75 8.14 -2.39 -0.02 4.74 16 41 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 42 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 43 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -74.48 349.88 1.37 -73.11 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.96 Total: 13.66 kcal Atomic # 6 Polarization: -58.32 SS G_CDS: 4.29 Total: -54.03 kcal Atomic # 7 Polarization: -83.63 SS G_CDS: -1.30 Total: -84.93 kcal Atomic # 8 Polarization: -86.20 SS G_CDS: -4.30 Total: -90.50 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 97.59 SS G_CDS: -0.30 Total: 97.28 kcal Total: -74.48 1.37 -73.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360383644.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.631 kcal (2) G-P(sol) polarization free energy of solvation -74.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds