Wall clock time and date at job start Tue Mar 31 2020 05:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 115.54762 * 2 1 4 4 C 1.52999 * 117.49739 * 145.67087 * 2 1 3 5 5 N 1.46498 * 117.49717 * 214.97482 * 4 2 1 6 6 S 1.65602 * 119.99612 * 144.81044 * 5 4 2 7 7 O 1.42109 * 104.27511 * 181.34803 * 6 5 4 8 8 O 1.42098 * 104.28120 * 309.20801 * 6 5 4 9 9 C 1.81394 * 104.44973 * 65.28269 * 6 5 4 10 10 C 1.53003 * 109.47387 * 179.97438 * 9 6 5 11 11 C 1.53002 * 109.47130 * 179.97438 * 10 9 6 12 12 C 1.50692 * 109.47012 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00112 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00231 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99857 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00269 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47241 * 60.00170 * 16 14 12 18 18 H 1.48497 * 109.47563 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47390 * 300.00100 * 16 14 12 20 20 C 1.53005 * 60.03177 * 107.47626 * 4 2 1 21 21 C 1.52993 * 117.49820 * 107.50087 * 20 4 2 22 22 C 1.52998 * 117.49562 * 252.51998 * 20 4 2 23 23 H 1.09000 * 109.46971 * 325.71609 * 1 2 3 24 24 H 1.08997 * 109.47445 * 85.72368 * 1 2 3 25 25 H 1.09004 * 109.46946 * 205.72429 * 1 2 3 26 26 H 1.09004 * 109.46710 * 154.27956 * 3 2 1 27 27 H 1.09000 * 109.46944 * 274.27762 * 3 2 1 28 28 H 1.09002 * 109.47483 * 34.28292 * 3 2 1 29 29 H 1.09005 * 117.49904 * 359.97438 * 4 2 1 30 30 H 0.97001 * 120.00384 * 325.09522 * 5 4 2 31 31 H 1.09009 * 109.47044 * 299.99503 * 9 6 5 32 32 H 1.09001 * 109.47747 * 59.99183 * 9 6 5 33 33 H 1.09000 * 109.46375 * 299.99213 * 10 9 6 34 34 H 1.08993 * 109.47045 * 59.99537 * 10 9 6 35 35 H 1.09003 * 109.47270 * 300.00013 * 11 10 9 36 36 H 1.09000 * 109.46896 * 60.00012 * 11 10 9 37 37 H 0.96993 * 120.00008 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.47673 * 111.39100 * 21 20 4 39 39 H 1.09007 * 109.47197 * 231.38999 * 21 20 4 40 40 H 1.09005 * 109.47035 * 351.38889 * 21 20 4 41 41 H 1.08998 * 109.47511 * 8.61297 * 22 20 4 42 42 H 1.09001 * 109.46948 * 128.60716 * 22 20 4 43 43 H 1.08997 * 109.47022 * 248.60354 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1208 0.7654 5 7 3.4933 -0.7901 1.4416 6 16 3.8700 -1.5076 2.8858 7 8 5.1179 -0.9323 3.2479 8 8 2.7129 -1.3117 3.6869 9 6 4.0729 -3.2638 2.4794 10 6 4.4279 -4.0431 3.7474 11 6 4.5984 -5.5244 3.4047 12 6 4.9486 -6.2918 4.6534 13 1 5.0400 -5.7747 5.5972 14 6 5.1513 -7.6542 4.5913 15 7 5.0396 -8.2839 3.4421 16 14 5.5848 -8.6055 6.1393 17 1 4.4959 -8.4501 7.1371 18 1 5.7492 -10.0435 5.8070 19 1 6.8532 -8.0795 6.7048 20 6 2.2367 -1.1221 -0.7647 21 6 3.5494 -0.7781 -1.4712 22 6 1.3588 -2.1577 -1.4703 23 1 -0.3633 0.8491 0.5789 24 1 -0.3634 0.0766 -1.0247 25 1 -0.3633 -0.9259 0.4461 26 1 3.1819 1.3088 0.4460 27 1 2.2774 1.7412 -1.0248 28 1 1.5805 2.0744 0.5789 29 1 1.6112 -1.8579 1.2693 30 1 4.1029 -0.1479 1.0455 31 1 3.1424 -3.6504 2.0635 32 1 4.8727 -3.3775 1.7476 33 1 5.3585 -3.6564 4.1627 34 1 3.6283 -3.9295 4.4794 35 1 3.6676 -5.9108 2.9894 36 1 5.3978 -5.6382 2.6725 37 1 5.1825 -9.2423 3.3984 38 1 3.9368 -1.6661 -1.9706 39 1 3.3709 0.0046 -2.2086 40 1 4.2757 -0.4277 -0.7379 41 1 0.7294 -2.6610 -0.7364 42 1 0.7296 -1.6588 -2.2073 43 1 1.9920 -2.8909 -1.9698 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360460049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:05 Heat of formation + Delta-G solvation = -75.633314 kcal Electronic energy + Delta-G solvation = -21726.534312 eV Core-core repulsion = 18512.854075 eV Total energy + Delta-G solvation = -3213.680237 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.94716 -36.87898 -35.75614 -34.67033 -33.34197 -32.18760 -31.39877 -28.85844 -27.79940 -26.90629 -26.49927 -23.71765 -20.74537 -20.67924 -19.27232 -18.01938 -17.56783 -16.69574 -16.42676 -15.71189 -15.33330 -14.93112 -14.50281 -14.41840 -14.21906 -13.85262 -13.01002 -12.83163 -12.76862 -12.59117 -12.51362 -12.31493 -12.27635 -12.03851 -11.97020 -11.90873 -11.80945 -11.78126 -11.75792 -11.40398 -11.16897 -11.03461 -10.89665 -10.86922 -10.40612 -9.94902 -9.58565 -9.41865 -9.18530 -8.85019 -8.40413 -6.05611 -4.08732 0.44645 2.77306 3.32241 3.36070 3.39282 3.40774 3.93487 4.30646 4.38980 4.42424 4.45231 4.53576 4.79800 4.88009 4.88782 5.17883 5.23819 5.25593 5.30898 5.36645 5.47993 5.52679 5.60055 5.67317 5.71245 5.74115 5.79293 5.80072 5.84949 5.89543 6.06106 6.12667 6.19301 6.26578 6.44999 6.84748 6.87918 7.56712 7.66849 7.92279 8.32834 8.97250 9.55905 11.05573 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023590 B = 0.003639 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.653292 B = 7693.202481 C = 8234.144564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.127 4.127 3 C -0.114 4.114 4 C 0.100 3.900 5 N -1.092 6.092 6 S 2.599 3.401 7 O -0.963 6.963 8 O -0.959 6.959 9 C -0.606 4.606 10 C -0.106 4.106 11 C 0.031 3.969 12 C -0.527 4.527 13 H 0.057 0.943 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.895 3.105 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.276 1.276 20 C -0.130 4.130 21 C -0.116 4.116 22 C -0.115 4.115 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.136 0.864 30 H 0.413 0.587 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.020 0.980 36 H 0.020 0.980 37 H 0.262 0.738 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.396 16.902 -12.269 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.130 4.130 3 C -0.172 4.172 4 C -0.009 4.009 5 N -0.848 5.848 6 S 2.696 3.304 7 O -0.954 6.954 8 O -0.949 6.949 9 C -0.738 4.738 10 C -0.146 4.146 11 C -0.007 4.007 12 C -0.566 4.566 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.534 5.534 16 Si 0.722 3.278 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C -0.133 4.133 21 C -0.173 4.173 22 C -0.173 4.173 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.153 0.847 30 H 0.250 0.750 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.039 0.961 36 H 0.039 0.961 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.401 17.082 -11.405 21.832 hybrid contribution 0.526 -0.875 0.059 1.023 sum -6.875 16.206 -11.346 20.944 Atomic orbital electron populations 1.21329 0.91611 1.02388 1.01779 1.22138 0.95132 0.91806 1.03911 1.21274 1.00350 0.93950 1.01614 1.21869 0.87004 1.00869 0.91174 1.55437 1.28260 1.57869 1.43190 1.05371 0.74087 0.77905 0.73059 1.93583 1.44570 1.76182 1.81018 1.93578 1.50210 1.85022 1.66069 1.30543 1.11285 1.21801 1.10150 1.21510 1.01156 1.00232 0.91670 1.19053 0.97543 0.86892 0.97212 1.21220 1.47892 0.92766 0.94676 0.92428 1.25015 0.95300 0.97807 0.96202 1.69945 1.49657 1.09309 1.24522 0.86614 0.79119 0.78717 0.83327 1.20116 1.21246 1.20115 1.22210 0.98236 0.99492 0.93315 1.21293 0.94495 1.01761 0.99794 1.21344 0.98767 0.97056 1.00108 0.92040 0.92068 0.92060 0.92384 0.92164 0.91968 0.84659 0.75005 0.85490 0.85239 0.91594 0.91581 0.96118 0.96121 0.92845 0.91739 0.92168 0.92335 0.92058 0.92044 0.91805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 8.88 37.16 0.33 -0.56 16 2 C -0.13 -1.13 2.70 -154.47 -0.42 -1.55 16 3 C -0.11 -0.94 8.82 37.15 0.33 -0.61 16 4 C 0.10 1.03 5.58 -67.93 -0.38 0.65 16 5 N -1.09 -12.25 5.01 -4.89 -0.02 -12.28 16 6 S 2.60 38.51 5.44 -107.50 -0.58 37.93 16 7 O -0.96 -17.02 18.08 -57.54 -1.04 -18.06 16 8 O -0.96 -17.00 17.81 -57.54 -1.02 -18.02 16 9 C -0.61 -9.33 6.08 37.16 0.23 -9.11 16 10 C -0.11 -2.16 5.16 -26.73 -0.14 -2.30 16 11 C 0.03 0.79 4.97 -27.89 -0.14 0.66 16 12 C -0.53 -14.88 9.11 -34.44 -0.31 -15.19 16 13 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 14 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 15 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 16 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 20 C -0.13 -1.13 2.70 -154.47 -0.42 -1.54 16 21 C -0.12 -0.92 8.82 37.15 0.33 -0.60 16 22 C -0.12 -0.90 8.88 37.16 0.33 -0.57 16 23 H 0.06 0.47 7.92 -51.93 -0.41 0.06 16 24 H 0.06 0.41 8.02 -51.93 -0.42 0.00 16 25 H 0.06 0.48 7.78 -51.93 -0.40 0.07 16 26 H 0.06 0.48 5.80 -51.93 -0.30 0.18 16 27 H 0.06 0.43 8.03 -51.93 -0.42 0.01 16 28 H 0.06 0.50 7.92 -51.93 -0.41 0.08 16 29 H 0.14 1.38 7.92 -51.93 -0.41 0.96 16 30 H 0.41 3.98 5.45 -34.47 -0.19 3.79 16 31 H 0.13 1.73 8.14 -51.92 -0.42 1.31 16 32 H 0.13 1.80 8.14 -51.92 -0.42 1.38 16 33 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.06 0.50 7.92 -51.93 -0.41 0.09 16 39 H 0.06 0.42 8.03 -51.93 -0.42 0.01 16 40 H 0.06 0.46 5.78 -51.93 -0.30 0.16 16 41 H 0.06 0.47 7.77 -51.93 -0.40 0.07 16 42 H 0.06 0.42 8.02 -51.93 -0.42 0.00 16 43 H 0.06 0.49 7.92 -51.93 -0.41 0.08 16 LS Contribution 356.84 15.07 5.38 5.38 Total: -1.00 -34.38 356.84 -9.34 -43.72 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -7.40 Total: -0.27 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: -0.36 Total: -29.16 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.71 Total: -38.10 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -2.06 Total: -36.08 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: 38.51 SS G_CDS: -0.58 Total: 37.93 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.38 -9.34 -43.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360460049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.913 kcal (2) G-P(sol) polarization free energy of solvation -34.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds