Wall clock time and date at job start Tue Mar 31 2020 05:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 115.54762 * 2 1 4 4 C 1.52999 * 117.49739 * 145.67087 * 2 1 3 5 5 N 1.46498 * 117.49717 * 214.97482 * 4 2 1 6 6 S 1.65602 * 119.99612 * 144.81044 * 5 4 2 7 7 O 1.42109 * 104.27511 * 181.34803 * 6 5 4 8 8 O 1.42098 * 104.28120 * 309.20801 * 6 5 4 9 9 C 1.81394 * 104.44973 * 65.28269 * 6 5 4 10 10 C 1.53003 * 109.47387 * 179.97438 * 9 6 5 11 11 C 1.53002 * 109.47130 * 179.97438 * 10 9 6 12 12 C 1.50692 * 109.47012 * 179.97438 * 11 10 9 13 13 H 1.08003 * 120.00112 * 0.02562 * 12 11 10 14 14 C 1.37882 * 120.00231 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99857 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 120.00269 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47241 * 60.00170 * 16 14 12 18 18 H 1.48497 * 109.47563 * 179.97438 * 16 14 12 19 19 H 1.48505 * 109.47390 * 300.00100 * 16 14 12 20 20 C 1.53005 * 60.03177 * 107.47626 * 4 2 1 21 21 C 1.52993 * 117.49820 * 107.50087 * 20 4 2 22 22 C 1.52998 * 117.49562 * 252.51998 * 20 4 2 23 23 H 1.09000 * 109.46971 * 325.71609 * 1 2 3 24 24 H 1.08997 * 109.47445 * 85.72368 * 1 2 3 25 25 H 1.09004 * 109.46946 * 205.72429 * 1 2 3 26 26 H 1.09004 * 109.46710 * 154.27956 * 3 2 1 27 27 H 1.09000 * 109.46944 * 274.27762 * 3 2 1 28 28 H 1.09002 * 109.47483 * 34.28292 * 3 2 1 29 29 H 1.09005 * 117.49904 * 359.97438 * 4 2 1 30 30 H 0.97001 * 120.00384 * 325.09522 * 5 4 2 31 31 H 1.09009 * 109.47044 * 299.99503 * 9 6 5 32 32 H 1.09001 * 109.47747 * 59.99183 * 9 6 5 33 33 H 1.09000 * 109.46375 * 299.99213 * 10 9 6 34 34 H 1.08993 * 109.47045 * 59.99537 * 10 9 6 35 35 H 1.09003 * 109.47270 * 300.00013 * 11 10 9 36 36 H 1.09000 * 109.46896 * 60.00012 * 11 10 9 37 37 H 0.96993 * 120.00008 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.47673 * 111.39100 * 21 20 4 39 39 H 1.09007 * 109.47197 * 231.38999 * 21 20 4 40 40 H 1.09005 * 109.47035 * 351.38889 * 21 20 4 41 41 H 1.08998 * 109.47511 * 8.61297 * 22 20 4 42 42 H 1.09001 * 109.46948 * 128.60716 * 22 20 4 43 43 H 1.08997 * 109.47022 * 248.60354 * 22 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1899 1.3804 0.0000 4 6 2.2365 -1.1208 0.7654 5 7 3.4933 -0.7901 1.4416 6 16 3.8700 -1.5076 2.8858 7 8 5.1179 -0.9323 3.2479 8 8 2.7129 -1.3117 3.6869 9 6 4.0729 -3.2638 2.4794 10 6 4.4279 -4.0431 3.7474 11 6 4.5984 -5.5244 3.4047 12 6 4.9486 -6.2918 4.6534 13 1 5.0400 -5.7747 5.5972 14 6 5.1513 -7.6542 4.5913 15 7 5.0396 -8.2839 3.4421 16 14 5.5848 -8.6055 6.1393 17 1 4.4959 -8.4501 7.1371 18 1 5.7492 -10.0435 5.8070 19 1 6.8532 -8.0795 6.7048 20 6 2.2367 -1.1221 -0.7647 21 6 3.5494 -0.7781 -1.4712 22 6 1.3588 -2.1577 -1.4703 23 1 -0.3633 0.8491 0.5789 24 1 -0.3634 0.0766 -1.0247 25 1 -0.3633 -0.9259 0.4461 26 1 3.1819 1.3088 0.4460 27 1 2.2774 1.7412 -1.0248 28 1 1.5805 2.0744 0.5789 29 1 1.6112 -1.8579 1.2693 30 1 4.1029 -0.1479 1.0455 31 1 3.1424 -3.6504 2.0635 32 1 4.8727 -3.3775 1.7476 33 1 5.3585 -3.6564 4.1627 34 1 3.6283 -3.9295 4.4794 35 1 3.6676 -5.9108 2.9894 36 1 5.3978 -5.6382 2.6725 37 1 5.1825 -9.2423 3.3984 38 1 3.9368 -1.6661 -1.9706 39 1 3.3709 0.0046 -2.2086 40 1 4.2757 -0.4277 -0.7379 41 1 0.7294 -2.6610 -0.7364 42 1 0.7296 -1.6588 -2.2073 43 1 1.9920 -2.8909 -1.9698 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360460049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:04 Heat of formation + Delta-G solvation = -98.414280 kcal Electronic energy + Delta-G solvation = -21727.522169 eV Core-core repulsion = 18512.854075 eV Total energy + Delta-G solvation = -3214.668094 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 289.150 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.66405 -38.20668 -37.09123 -36.47688 -34.24977 -34.17111 -32.02617 -29.69215 -29.44651 -27.62386 -27.10286 -25.62377 -22.43986 -21.55239 -20.43693 -18.80355 -18.66318 -18.52663 -17.51831 -17.15045 -16.57899 -16.44200 -15.73067 -15.53088 -15.21332 -14.56078 -14.48845 -14.09167 -13.74881 -13.50614 -13.48085 -13.36708 -13.26479 -13.19023 -13.11539 -13.04270 -12.93297 -12.87013 -12.73442 -12.65577 -12.63042 -12.42464 -12.26982 -12.07593 -11.75704 -11.66381 -11.38579 -11.02853 -10.57184 -10.25791 -9.70713 -8.22697 -6.33854 -0.78374 1.40227 1.42717 1.50660 1.68939 2.39752 2.62802 2.79848 3.10762 3.19886 3.64474 3.70851 3.75512 3.78610 3.90531 4.07857 4.23085 4.24241 4.38138 4.62674 4.64096 4.78493 4.86085 4.90755 4.94607 5.00109 5.03508 5.04977 5.09267 5.11956 5.14383 5.21464 5.24680 5.42714 5.44701 5.45103 5.57871 5.62229 5.78944 6.01872 6.19349 6.81399 7.35424 8.88578 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.023590 B = 0.003639 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.653292 B = 7693.202481 C = 8234.144564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.123 4.123 3 C -0.118 4.118 4 C 0.069 3.931 5 N -1.078 6.078 6 S 2.631 3.369 7 O -0.991 6.991 8 O -0.987 6.987 9 C -0.605 4.605 10 C -0.107 4.107 11 C 0.032 3.968 12 C -0.554 4.554 13 H 0.060 0.940 14 C 0.004 3.996 15 N -0.929 5.929 16 Si 0.962 3.038 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.268 1.268 20 C -0.119 4.119 21 C -0.120 4.120 22 C -0.118 4.118 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.134 0.866 30 H 0.423 0.577 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.004 0.996 36 H 0.003 0.997 37 H 0.265 0.735 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.738 17.653 -12.826 23.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.126 4.126 3 C -0.175 4.175 4 C -0.039 4.039 5 N -0.837 5.837 6 S 2.727 3.273 7 O -0.981 6.981 8 O -0.977 6.977 9 C -0.736 4.736 10 C -0.146 4.146 11 C -0.006 4.006 12 C -0.592 4.592 13 H 0.078 0.922 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.787 3.213 17 H -0.192 1.192 18 H -0.206 1.206 19 H -0.193 1.193 20 C -0.122 4.122 21 C -0.177 4.177 22 C -0.175 4.175 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.152 0.848 30 H 0.262 0.738 31 H 0.162 0.838 32 H 0.164 0.836 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.022 0.978 36 H 0.021 0.979 37 H 0.074 0.926 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.739 17.841 -11.961 22.831 hybrid contribution 0.593 -1.072 0.146 1.234 sum -7.146 16.769 -11.815 21.722 Atomic orbital electron populations 1.21372 0.90879 1.02361 1.02686 1.22265 0.95754 0.91875 1.02710 1.21331 1.00084 0.93578 1.02549 1.22151 0.86828 1.02487 0.92427 1.54987 1.28946 1.57437 1.42284 1.04211 0.72797 0.77104 0.73228 1.93539 1.45906 1.76591 1.82097 1.93541 1.51203 1.85272 1.67665 1.30493 1.12808 1.22109 1.08237 1.21324 1.01421 0.97742 0.94106 1.18949 0.95833 0.90033 0.95814 1.21714 1.48050 0.93679 0.95803 0.92190 1.25924 0.95052 0.98908 0.99553 1.70060 1.50447 1.09723 1.26663 0.85540 0.79193 0.77292 0.79299 1.19227 1.20581 1.19257 1.22277 0.98611 0.99368 0.91935 1.21354 0.94056 1.02277 1.00034 1.21390 0.98824 0.96972 1.00309 0.91951 0.90690 0.92264 0.92700 0.90748 0.91889 0.84832 0.73823 0.83753 0.83634 0.91603 0.91513 0.97796 0.97905 0.92614 0.91624 0.90936 0.92392 0.92171 0.90779 0.91807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.60 8.88 71.98 0.64 -0.96 16 2 C -0.12 -1.96 2.70 -52.16 -0.14 -2.11 16 3 C -0.12 -1.70 8.82 71.98 0.64 -1.06 16 4 C 0.07 1.34 5.58 44.99 0.25 1.59 16 5 N -1.08 -22.86 5.01 -169.38 -0.85 -23.71 16 6 S 2.63 76.24 5.44 -56.49 -0.31 75.94 16 7 O -0.99 -34.44 18.08 -127.65 -2.31 -36.75 16 8 O -0.99 -34.56 17.81 -127.65 -2.27 -36.83 16 9 C -0.61 -18.31 6.08 71.98 0.44 -17.88 16 10 C -0.11 -4.36 5.16 30.60 0.16 -4.20 16 11 C 0.03 1.65 4.97 29.85 0.15 1.80 16 12 C -0.55 -31.65 9.11 25.60 0.23 -31.41 16 13 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 14 C 0.00 0.23 5.46 84.66 0.46 0.69 16 15 N -0.93 -55.69 13.29 21.45 0.28 -55.41 16 16 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 C -0.12 -1.84 2.70 -52.16 -0.14 -1.98 16 21 C -0.12 -1.65 8.82 71.98 0.64 -1.02 16 22 C -0.12 -1.61 8.88 71.98 0.64 -0.97 16 23 H 0.06 0.85 7.92 -2.39 -0.02 0.83 16 24 H 0.07 0.83 8.02 -2.39 -0.02 0.81 16 25 H 0.06 0.84 7.78 -2.38 -0.02 0.82 16 26 H 0.05 0.81 5.80 -2.38 -0.01 0.80 16 27 H 0.07 0.86 8.03 -2.39 -0.02 0.84 16 28 H 0.06 0.89 7.92 -2.39 -0.02 0.87 16 29 H 0.13 2.60 7.92 -2.38 -0.02 2.58 16 30 H 0.42 7.52 5.45 -96.74 -0.53 6.99 16 31 H 0.14 3.83 8.14 -2.39 -0.02 3.81 16 32 H 0.15 3.92 8.14 -2.39 -0.02 3.90 16 33 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 36 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 38 H 0.06 0.90 7.92 -2.39 -0.02 0.88 16 39 H 0.07 0.83 8.03 -2.38 -0.02 0.81 16 40 H 0.06 0.80 5.78 -2.38 -0.01 0.78 16 41 H 0.06 0.84 7.77 -2.39 -0.02 0.82 16 42 H 0.07 0.83 8.02 -2.39 -0.02 0.81 16 43 H 0.06 0.88 7.92 -2.39 -0.02 0.86 16 Total: -1.00 -72.90 356.84 0.98 -71.92 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.45 Total: 16.13 kcal Atomic # 6 Polarization: -61.46 SS G_CDS: 3.96 Total: -57.51 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -0.56 Total: -79.12 kcal Atomic # 8 Polarization: -69.00 SS G_CDS: -4.58 Total: -73.58 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 76.24 SS G_CDS: -0.31 Total: 75.94 kcal Total: -72.90 0.98 -71.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360460049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.492 kcal (2) G-P(sol) polarization free energy of solvation -72.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds