Wall clock time and date at job start Tue Mar 31 2020 06:26:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38006 * 120.01819 * 2 1 4 4 C 1.38247 * 120.21124 * 180.28242 * 3 2 1 5 5 C 1.38846 * 120.23372 * 359.71140 * 4 3 2 6 6 O 1.35916 * 119.98204 * 180.02562 * 5 4 3 7 7 C 1.38454 * 120.03439 * 0.02762 * 5 4 3 8 8 C 1.39522 * 119.79529 * 359.97250 * 7 5 4 9 9 C 1.47850 * 120.12172 * 180.02562 * 8 7 5 10 10 O 1.21553 * 120.00421 * 234.64660 * 9 8 7 11 11 N 1.34782 * 119.99859 * 54.65217 * 9 8 7 12 12 C 1.46927 * 120.62899 * 5.21651 * 11 9 8 13 13 C 1.53628 * 108.54220 * 126.36977 * 12 11 9 14 14 C 1.53048 * 109.24032 * 54.85835 * 13 12 11 15 15 C 1.50695 * 109.44765 * 178.49607 * 14 13 12 16 16 H 1.08000 * 119.99526 * 120.06390 * 15 14 13 17 17 C 1.37872 * 120.00201 * 300.05823 * 15 14 13 18 18 N 1.31520 * 120.00134 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00296 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47156 * 59.99729 * 19 17 15 21 21 H 1.48501 * 109.47237 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.46606 * 300.00018 * 19 17 15 23 23 C 1.53039 * 109.53604 * 298.51147 * 14 13 12 24 24 C 1.46929 * 120.63186 * 185.49892 * 11 9 8 25 25 H 1.09001 * 109.47176 * 275.14944 * 1 2 3 26 26 H 1.08997 * 109.47444 * 35.14618 * 1 2 3 27 27 H 1.09000 * 109.46742 * 155.15213 * 1 2 3 28 28 H 1.08007 * 119.89289 * 359.97286 * 3 2 1 29 29 H 1.07994 * 119.88406 * 179.69620 * 4 3 2 30 30 H 0.96702 * 113.99956 * 270.02408 * 6 5 4 31 31 H 1.08000 * 120.10476 * 179.97438 * 7 5 4 32 32 H 1.08995 * 109.58631 * 246.20523 * 12 11 9 33 33 H 1.09000 * 109.58453 * 6.63394 * 12 11 9 34 34 H 1.08993 * 109.63847 * 294.86973 * 13 12 11 35 35 H 1.08995 * 109.43356 * 174.72261 * 13 12 11 36 36 H 1.09004 * 109.45634 * 58.52930 * 14 13 12 37 37 H 0.97001 * 120.00236 * 179.97438 * 18 17 15 38 38 H 1.09003 * 109.49879 * 301.40954 * 23 14 13 39 39 H 1.09000 * 109.49491 * 181.31448 * 23 14 13 40 40 H 1.08993 * 109.58310 * 353.37168 * 24 11 9 41 41 H 1.09005 * 109.58450 * 113.64980 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1949 0.0000 4 6 3.5798 1.1996 -0.0059 5 6 4.2830 0.0024 -0.0058 6 8 5.6421 0.0129 -0.0111 7 6 3.6004 -1.2022 -0.0004 8 6 2.2052 -1.2084 0.0056 9 6 1.4690 -2.4906 0.0120 10 8 0.6345 -2.7166 -0.8425 11 7 1.7231 -3.4088 0.9653 12 6 2.6442 -3.1064 2.0694 13 6 1.9229 -3.3837 3.3972 14 6 1.3960 -4.8206 3.3944 15 6 0.7197 -5.1096 4.7097 16 1 -0.3233 -5.3892 4.7306 17 6 1.4323 -5.0170 5.8863 18 7 2.7023 -4.6761 5.8609 19 14 0.5941 -5.3759 7.5167 20 1 0.0843 -6.7706 7.5148 21 1 1.5703 -5.2065 8.6229 22 1 -0.5387 -4.4350 7.7084 23 6 0.3897 -4.9945 2.2545 24 6 1.0891 -4.7334 0.9169 25 1 -0.3633 0.0922 1.0235 26 1 -0.3634 0.8403 -0.5916 27 1 -0.3633 -0.9325 -0.4318 28 1 1.6559 2.1295 -0.0004 29 1 4.1147 2.1378 -0.0108 30 1 6.0320 0.0143 -0.8960 31 1 4.1462 -2.1341 -0.0007 32 1 3.5282 -3.7392 1.9914 33 1 2.9377 -2.0577 2.0235 34 1 1.0896 -2.6909 3.5130 35 1 2.6219 -3.2542 4.2234 36 1 2.2270 -5.5119 3.2537 37 1 3.2036 -4.6106 6.6887 38 1 -0.4293 -4.2864 2.3811 39 1 -0.0026 -6.0113 2.2676 40 1 0.3564 -4.7585 0.1104 41 1 1.8487 -5.4960 0.7443 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397344011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:25 Heat of formation + Delta-G solvation = -62.338372 kcal Electronic energy + Delta-G solvation = -23381.301958 eV Core-core repulsion = 20032.754281 eV Total energy + Delta-G solvation = -3348.547677 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.52658 -39.01722 -37.15761 -36.47739 -33.60271 -31.98220 -31.74767 -30.68061 -29.92948 -26.76186 -26.03708 -24.09314 -22.60835 -22.46613 -21.56010 -20.15388 -18.94465 -17.73737 -16.95700 -16.27391 -16.03391 -15.73309 -15.57921 -14.69094 -14.55758 -14.42879 -13.75972 -13.53944 -13.48220 -13.11243 -12.95201 -12.70771 -12.54553 -12.29292 -11.80888 -11.71704 -11.66241 -11.47013 -11.21893 -10.92860 -10.86102 -10.67644 -10.40769 -10.10808 -9.68914 -9.48393 -9.19001 -9.10702 -8.84147 -8.52684 -8.38609 -8.03750 -6.03367 -4.09843 0.93827 1.15771 2.87651 3.29591 3.32592 3.34615 3.37296 3.55204 4.12290 4.40531 4.64477 4.75273 4.87252 5.03752 5.25993 5.27556 5.52830 5.60771 5.64956 5.73768 5.76524 5.81504 5.92807 6.05362 6.08983 6.11625 6.18430 6.24899 6.29650 6.43071 6.48394 6.63471 6.64665 6.86318 7.01494 7.12662 7.27251 7.51601 7.65137 7.85000 7.90646 8.03044 8.39223 8.44451 8.93282 9.55347 11.02121 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.004552 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.209031 B = 6150.252149 C = 6672.480773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.045 4.045 3 C -0.111 4.111 4 C -0.126 4.126 5 C 0.092 3.908 6 O -0.495 6.495 7 C -0.107 4.107 8 C -0.101 4.101 9 C 0.557 3.443 10 O -0.550 6.550 11 N -0.590 5.590 12 C 0.099 3.901 13 C -0.122 4.122 14 C 0.049 3.951 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.062 3.938 18 N -0.891 5.891 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.123 4.123 24 C 0.111 3.889 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.131 0.869 29 H 0.130 0.870 30 H 0.388 0.612 31 H 0.134 0.866 32 H 0.063 0.937 33 H 0.071 0.929 34 H 0.039 0.961 35 H 0.105 0.895 36 H 0.027 0.973 37 H 0.261 0.739 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.835 10.219 -12.244 16.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.046 4.046 3 C -0.129 4.129 4 C -0.145 4.145 5 C 0.048 3.952 6 O -0.305 6.305 7 C -0.126 4.126 8 C -0.104 4.104 9 C 0.345 3.655 10 O -0.430 6.430 11 N -0.321 5.321 12 C -0.022 4.022 13 C -0.160 4.160 14 C 0.030 3.970 15 C -0.551 4.551 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.161 4.161 24 C -0.011 4.011 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.109 0.891 28 H 0.149 0.851 29 H 0.148 0.852 30 H 0.243 0.757 31 H 0.152 0.848 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.058 0.942 35 H 0.123 0.877 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.098 0.902 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.493 10.091 -11.925 15.819 hybrid contribution -0.101 -0.132 0.614 0.636 sum 2.392 9.960 -11.311 15.260 Atomic orbital electron populations 1.21059 0.90428 1.04744 1.02786 1.19937 0.96716 0.91424 0.96515 1.20856 0.93471 0.97570 1.01010 1.21505 0.94453 0.97867 1.00655 1.18249 0.82960 0.91929 1.02081 1.84881 1.15863 1.96445 1.33306 1.21517 0.92995 0.98534 0.99580 1.19686 0.93209 0.93723 1.03828 1.18256 0.82291 0.83344 0.81606 1.90699 1.34359 1.78971 1.38959 1.48237 1.45026 1.14235 1.24585 1.22269 0.92098 1.00203 0.87666 1.22093 1.00209 0.99437 0.94295 1.18642 0.93662 0.92658 0.92035 1.21154 0.96794 1.46170 0.91005 0.92740 1.24957 0.94826 0.95082 0.99040 1.69826 1.07640 1.48180 1.27401 0.86677 0.79247 0.78873 0.83319 1.20292 1.21296 1.20340 1.22002 0.99445 1.00631 0.94002 1.21756 0.97154 0.82304 0.99910 0.90833 0.91294 0.89102 0.85076 0.85185 0.75700 0.84802 0.91863 0.91098 0.94243 0.87718 0.95445 0.92884 0.92880 0.92037 0.90191 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 9.68 36.00 0.35 -1.40 16 2 C -0.05 -0.62 5.91 -104.21 -0.62 -1.24 16 3 C -0.11 -1.26 9.70 -39.66 -0.38 -1.65 16 4 C -0.13 -1.39 9.98 -39.35 -0.39 -1.78 16 5 C 0.09 1.13 6.70 -39.28 -0.26 0.87 16 6 O -0.50 -5.33 13.50 -19.48 -0.26 -5.59 16 7 C -0.11 -1.49 7.73 -39.02 -0.30 -1.79 16 8 C -0.10 -1.57 4.59 -104.99 -0.48 -2.05 16 9 C 0.56 10.02 6.52 -12.32 -0.08 9.94 16 10 O -0.55 -10.98 14.50 5.32 0.08 -10.90 16 11 N -0.59 -10.79 2.97 -173.61 -0.51 -11.31 16 12 C 0.10 1.85 5.64 -3.48 -0.02 1.83 16 13 C -0.12 -2.74 5.17 -26.38 -0.14 -2.87 16 14 C 0.05 1.15 2.06 -91.73 -0.19 0.96 16 15 C -0.51 -13.67 8.56 -34.44 -0.29 -13.96 16 16 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 18 N -0.89 -24.56 11.30 55.43 0.63 -23.94 16 19 Si 0.89 20.90 29.54 -169.99 -5.02 15.87 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 C -0.12 -2.50 5.30 -26.61 -0.14 -2.65 16 24 C 0.11 2.01 6.44 -3.71 -0.02 1.99 16 25 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 27 H 0.09 1.41 5.53 -51.93 -0.29 1.13 16 28 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 29 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.39 2.17 9.06 45.56 0.41 2.59 16 31 H 0.13 1.80 7.79 -52.49 -0.41 1.39 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.24 5.38 -51.93 -0.28 0.96 16 34 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 2.62 6.03 -51.93 -0.31 2.31 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.08 1.43 7.00 -51.93 -0.36 1.07 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 330.47 15.07 4.98 4.98 Total: -1.00 -30.46 330.47 -8.19 -38.65 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.01 Total: 4.46 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -3.07 Total: -12.23 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.11 Total: -35.24 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: -0.19 Total: -16.49 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.46 -8.19 -38.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397344011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.687 kcal (2) G-P(sol) polarization free energy of solvation -30.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds