Wall clock time and date at job start Tue Mar 31 2020 06:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38006 * 120.01819 * 2 1 4 4 C 1.38247 * 120.21124 * 180.28242 * 3 2 1 5 5 C 1.38846 * 120.23372 * 359.71140 * 4 3 2 6 6 O 1.35916 * 119.98204 * 180.02562 * 5 4 3 7 7 C 1.38454 * 120.03439 * 0.02762 * 5 4 3 8 8 C 1.39522 * 119.79529 * 359.97250 * 7 5 4 9 9 C 1.47850 * 120.12172 * 180.02562 * 8 7 5 10 10 O 1.21553 * 120.00421 * 234.64660 * 9 8 7 11 11 N 1.34782 * 119.99859 * 54.65217 * 9 8 7 12 12 C 1.46927 * 120.62899 * 5.21651 * 11 9 8 13 13 C 1.53628 * 108.54220 * 126.36977 * 12 11 9 14 14 C 1.53048 * 109.24032 * 54.85835 * 13 12 11 15 15 C 1.50695 * 109.44765 * 178.49607 * 14 13 12 16 16 H 1.08000 * 119.99526 * 120.06390 * 15 14 13 17 17 C 1.37872 * 120.00201 * 300.05823 * 15 14 13 18 18 N 1.31520 * 120.00134 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00296 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47156 * 59.99729 * 19 17 15 21 21 H 1.48501 * 109.47237 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.46606 * 300.00018 * 19 17 15 23 23 C 1.53039 * 109.53604 * 298.51147 * 14 13 12 24 24 C 1.46929 * 120.63186 * 185.49892 * 11 9 8 25 25 H 1.09001 * 109.47176 * 275.14944 * 1 2 3 26 26 H 1.08997 * 109.47444 * 35.14618 * 1 2 3 27 27 H 1.09000 * 109.46742 * 155.15213 * 1 2 3 28 28 H 1.08007 * 119.89289 * 359.97286 * 3 2 1 29 29 H 1.07994 * 119.88406 * 179.69620 * 4 3 2 30 30 H 0.96702 * 113.99956 * 270.02408 * 6 5 4 31 31 H 1.08000 * 120.10476 * 179.97438 * 7 5 4 32 32 H 1.08995 * 109.58631 * 246.20523 * 12 11 9 33 33 H 1.09000 * 109.58453 * 6.63394 * 12 11 9 34 34 H 1.08993 * 109.63847 * 294.86973 * 13 12 11 35 35 H 1.08995 * 109.43356 * 174.72261 * 13 12 11 36 36 H 1.09004 * 109.45634 * 58.52930 * 14 13 12 37 37 H 0.97001 * 120.00236 * 179.97438 * 18 17 15 38 38 H 1.09003 * 109.49879 * 301.40954 * 23 14 13 39 39 H 1.09000 * 109.49491 * 181.31448 * 23 14 13 40 40 H 1.08993 * 109.58310 * 353.37168 * 24 11 9 41 41 H 1.09005 * 109.58450 * 113.64980 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1949 0.0000 4 6 3.5798 1.1996 -0.0059 5 6 4.2830 0.0024 -0.0058 6 8 5.6421 0.0129 -0.0111 7 6 3.6004 -1.2022 -0.0004 8 6 2.2052 -1.2084 0.0056 9 6 1.4690 -2.4906 0.0120 10 8 0.6345 -2.7166 -0.8425 11 7 1.7231 -3.4088 0.9653 12 6 2.6442 -3.1064 2.0694 13 6 1.9229 -3.3837 3.3972 14 6 1.3960 -4.8206 3.3944 15 6 0.7197 -5.1096 4.7097 16 1 -0.3233 -5.3892 4.7306 17 6 1.4323 -5.0170 5.8863 18 7 2.7023 -4.6761 5.8609 19 14 0.5941 -5.3759 7.5167 20 1 0.0843 -6.7706 7.5148 21 1 1.5703 -5.2065 8.6229 22 1 -0.5387 -4.4350 7.7084 23 6 0.3897 -4.9945 2.2545 24 6 1.0891 -4.7334 0.9169 25 1 -0.3633 0.0922 1.0235 26 1 -0.3634 0.8403 -0.5916 27 1 -0.3633 -0.9325 -0.4318 28 1 1.6559 2.1295 -0.0004 29 1 4.1147 2.1378 -0.0108 30 1 6.0320 0.0143 -0.8960 31 1 4.1462 -2.1341 -0.0007 32 1 3.5282 -3.7392 1.9914 33 1 2.9377 -2.0577 2.0235 34 1 1.0896 -2.6909 3.5130 35 1 2.6219 -3.2542 4.2234 36 1 2.2270 -5.5119 3.2537 37 1 3.2036 -4.6106 6.6887 38 1 -0.4293 -4.2864 2.3811 39 1 -0.0026 -6.0113 2.2676 40 1 0.3564 -4.7585 0.1104 41 1 1.8487 -5.4960 0.7443 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397344011.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:22 Heat of formation + Delta-G solvation = -81.073385 kcal Electronic energy + Delta-G solvation = -23382.114369 eV Core-core repulsion = 20032.754281 eV Total energy + Delta-G solvation = -3349.360088 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.74828 -40.17202 -38.55982 -37.61294 -35.40471 -33.47230 -32.72978 -32.18964 -31.44937 -28.25931 -27.34879 -25.48725 -24.16503 -23.91878 -22.66447 -21.58736 -20.33431 -19.01600 -18.48781 -17.95369 -17.14756 -16.96079 -16.67029 -16.48855 -15.80972 -15.72287 -14.98816 -14.85600 -14.70332 -14.57985 -14.46462 -14.32155 -14.04516 -13.46972 -13.33322 -13.16085 -12.82574 -12.73730 -12.64908 -12.50763 -12.46211 -12.16410 -12.01664 -11.75373 -11.50042 -11.02831 -10.97816 -10.76782 -10.41763 -9.98137 -9.61107 -9.47468 -8.08466 -6.22102 -0.07096 0.22108 1.42556 1.42982 1.50542 1.54711 1.99738 2.43688 2.55157 3.17971 3.20976 3.46901 3.81577 3.92170 4.06574 4.09976 4.22940 4.31957 4.37394 4.42871 4.52825 4.63561 4.66577 4.69895 4.73529 4.82487 4.89427 4.93177 5.08954 5.17034 5.19831 5.23194 5.32711 5.39223 5.46457 5.53962 5.62735 5.76502 5.96002 6.09108 6.36437 6.39495 6.85583 6.87207 7.02708 7.45803 8.94997 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.018475 B = 0.004552 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.209031 B = 6150.252149 C = 6672.480773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.062 4.062 3 C -0.103 4.103 4 C -0.118 4.118 5 C 0.095 3.905 6 O -0.504 6.504 7 C -0.119 4.119 8 C -0.127 4.127 9 C 0.558 3.442 10 O -0.574 6.574 11 N -0.595 5.595 12 C 0.117 3.883 13 C -0.112 4.112 14 C 0.046 3.954 15 C -0.536 4.536 16 H 0.049 0.951 17 C 0.018 3.982 18 N -0.913 5.913 19 Si 0.949 3.051 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.275 1.275 23 C -0.112 4.112 24 C 0.115 3.885 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.061 0.939 28 H 0.164 0.836 29 H 0.161 0.839 30 H 0.411 0.589 31 H 0.131 0.869 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.025 0.975 35 H 0.079 0.921 36 H 0.005 0.995 37 H 0.262 0.738 38 H 0.041 0.959 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.365 12.067 -12.727 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.062 4.062 3 C -0.120 4.120 4 C -0.136 4.136 5 C 0.051 3.949 6 O -0.317 6.317 7 C -0.139 4.139 8 C -0.130 4.130 9 C 0.348 3.652 10 O -0.455 6.455 11 N -0.325 5.325 12 C -0.005 4.005 13 C -0.151 4.151 14 C 0.028 3.972 15 C -0.574 4.574 16 H 0.067 0.933 17 C -0.181 4.181 18 N -0.552 5.552 19 Si 0.775 3.225 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.200 1.200 23 C -0.151 4.151 24 C -0.007 4.007 25 H 0.090 0.910 26 H 0.115 0.885 27 H 0.080 0.920 28 H 0.182 0.818 29 H 0.179 0.821 30 H 0.270 0.730 31 H 0.149 0.851 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.044 0.956 35 H 0.097 0.903 36 H 0.023 0.977 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.032 11.939 -12.432 17.501 hybrid contribution -0.218 -0.663 0.729 1.010 sum 2.814 11.276 -11.703 16.493 Atomic orbital electron populations 1.21017 0.90397 1.04351 1.02933 1.20150 0.97034 0.91850 0.97214 1.21196 0.93816 0.97739 0.99279 1.21866 0.94438 0.98580 0.98727 1.18331 0.83616 0.91772 1.01217 1.84824 1.15026 1.96339 1.35489 1.21541 0.92417 0.99405 1.00493 1.19590 0.93861 0.92880 1.06702 1.18692 0.81814 0.83924 0.80765 1.90674 1.35525 1.79573 1.39769 1.48240 1.45116 1.14441 1.24749 1.22013 0.91597 1.01190 0.85743 1.21855 0.99263 0.98261 0.95706 1.18607 0.93526 0.92812 0.92293 1.21508 0.96794 1.46447 0.92624 0.93305 1.25647 0.95432 0.94971 1.02059 1.69947 1.08595 1.48622 1.28058 0.85751 0.78334 0.78769 0.79622 1.19804 1.20843 1.20047 1.21845 0.98360 1.00745 0.94113 1.21685 0.97545 0.82960 0.98496 0.90992 0.88487 0.92039 0.81843 0.82121 0.72995 0.85137 0.91361 0.89673 0.95635 0.90298 0.97661 0.92900 0.93997 0.91360 0.89693 0.90642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.29 9.68 71.23 0.69 -2.60 16 2 C -0.06 -1.61 5.91 -19.60 -0.12 -1.73 16 3 C -0.10 -1.98 9.70 22.22 0.22 -1.77 16 4 C -0.12 -2.16 9.98 22.42 0.22 -1.93 16 5 C 0.10 2.09 6.70 22.47 0.15 2.24 16 6 O -0.50 -9.41 13.50 -92.61 -1.25 -10.66 16 7 C -0.12 -3.17 7.73 22.63 0.17 -3.00 16 8 C -0.13 -3.86 4.59 -20.10 -0.09 -3.95 16 9 C 0.56 20.17 6.52 86.79 0.57 20.74 16 10 O -0.57 -23.21 14.50 -3.88 -0.06 -23.27 16 11 N -0.59 -21.88 2.97 -821.46 -2.44 -24.32 16 12 C 0.12 4.37 5.64 86.51 0.49 4.86 16 13 C -0.11 -5.17 5.17 30.82 0.16 -5.01 16 14 C 0.05 2.25 2.06 -11.51 -0.02 2.23 16 15 C -0.54 -29.11 8.56 25.60 0.22 -28.89 16 16 H 0.05 2.64 7.74 -2.91 -0.02 2.61 16 17 C 0.02 0.97 5.30 84.65 0.45 1.42 16 18 N -0.91 -51.06 11.30 21.45 0.24 -50.82 16 19 Si 0.95 43.06 29.54 68.60 2.03 45.09 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 22 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 23 C -0.11 -4.67 5.30 30.67 0.16 -4.51 16 24 C 0.12 4.21 6.44 86.36 0.56 4.76 16 25 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.10 1.81 8.12 -2.39 -0.02 1.79 16 27 H 0.06 1.93 5.53 -2.39 -0.01 1.91 16 28 H 0.16 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 30 H 0.41 3.37 9.06 -74.06 -0.67 2.70 16 31 H 0.13 3.43 7.79 -2.91 -0.02 3.41 16 32 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.09 2.97 5.38 -2.39 -0.01 2.95 16 34 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.08 4.07 6.03 -2.39 -0.01 4.05 16 36 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 37 H 0.26 14.01 8.31 -92.71 -0.77 13.24 16 38 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.08 3.04 7.00 -2.39 -0.02 3.03 16 41 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 Total: -1.00 -66.29 330.47 2.72 -63.57 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: 0.37 Total: 17.54 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 3.82 Total: -17.13 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -2.19 Total: -75.14 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -1.31 Total: -33.93 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -66.29 2.72 -63.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397344011.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.505 kcal (2) G-P(sol) polarization free energy of solvation -66.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds