Wall clock time and date at job start Tue Mar 31 2020 06:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38001 * 120.01533 * 2 1 4 4 C 1.38247 * 120.20383 * 180.25497 * 3 2 1 5 5 C 1.38850 * 120.23835 * 359.74864 * 4 3 2 6 6 O 1.35907 * 119.98656 * 179.97438 * 5 4 3 7 7 C 1.38450 * 120.03019 * 359.97438 * 5 4 3 8 8 C 1.39524 * 119.79587 * 0.02562 * 7 5 4 9 9 C 1.47857 * 120.12039 * 179.97438 * 8 7 5 10 10 O 1.21550 * 120.00428 * 235.33297 * 9 8 7 11 11 N 1.34776 * 119.99893 * 55.33982 * 9 8 7 12 12 C 1.46925 * 120.63484 * 356.00359 * 11 9 8 13 13 C 1.53193 * 108.77596 * 126.39116 * 12 11 9 14 14 C 1.53039 * 109.31106 * 54.64393 * 13 12 11 15 15 C 1.53045 * 109.53413 * 298.62873 * 14 13 12 16 16 H 1.08998 * 109.50134 * 301.38476 * 15 14 13 17 17 C 1.50702 * 109.49741 * 181.31808 * 15 14 13 18 18 H 1.08005 * 119.99632 * 0.06757 * 17 15 14 19 19 C 1.37872 * 119.99938 * 179.79529 * 17 15 14 20 20 N 1.31517 * 120.00146 * 0.26972 * 19 17 15 21 21 Si 1.86806 * 119.99849 * 180.27874 * 19 17 15 22 22 H 1.48502 * 109.47186 * 59.99401 * 21 19 17 23 23 H 1.48496 * 109.47195 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46681 * 299.99580 * 21 19 17 25 25 C 1.46939 * 120.60697 * 175.98857 * 11 9 8 26 26 H 1.09000 * 109.47064 * 274.53010 * 1 2 3 27 27 H 1.09000 * 109.47029 * 34.52367 * 1 2 3 28 28 H 1.08995 * 109.47408 * 154.52427 * 1 2 3 29 29 H 1.07998 * 119.90436 * 0.02562 * 3 2 1 30 30 H 1.08005 * 119.88111 * 179.76358 * 4 3 2 31 31 H 0.96709 * 114.00003 * 270.01734 * 6 5 4 32 32 H 1.08007 * 120.10361 * 180.02562 * 7 5 4 33 33 H 1.09008 * 109.58135 * 6.60979 * 12 11 9 34 34 H 1.08996 * 109.58919 * 246.18614 * 12 11 9 35 35 H 1.09002 * 109.49802 * 294.68932 * 13 12 11 36 36 H 1.09001 * 109.49808 * 174.59070 * 13 12 11 37 37 H 1.08997 * 109.45686 * 178.61492 * 14 13 12 38 38 H 1.09000 * 109.45259 * 58.64507 * 14 13 12 39 39 H 0.96997 * 119.99618 * 180.02562 * 20 19 17 40 40 H 1.08992 * 109.56247 * 113.80023 * 25 11 9 41 41 H 1.09006 * 109.61134 * 353.37684 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1949 0.0000 4 6 3.5798 1.1995 -0.0053 5 6 4.2830 0.0022 -0.0054 6 8 5.6420 0.0127 -0.0112 7 6 3.6004 -1.2023 0.0003 8 6 2.2052 -1.2084 0.0057 9 6 1.4689 -2.4906 0.0113 10 8 0.6437 -2.7214 -0.8508 11 7 1.7126 -3.4035 0.9724 12 6 2.7675 -3.1771 1.9697 13 6 2.1636 -3.3288 3.3694 14 6 1.4770 -4.6922 3.4793 15 6 0.3452 -4.7794 2.4528 16 1 -0.3695 -3.9757 2.6301 17 6 -0.3510 -6.1096 2.5836 18 1 -0.0203 -6.8215 3.3254 19 6 -1.4136 -6.4153 1.7600 20 7 -1.8163 -5.5484 0.8567 21 14 -2.2816 -8.0610 1.9274 22 1 -2.8408 -8.1887 3.2971 23 1 -3.3823 -8.1434 0.9341 24 1 -1.3117 -9.1590 1.6843 25 6 0.9279 -4.6438 1.0425 26 1 -0.3633 0.0812 1.0245 27 1 -0.3633 0.8467 -0.5824 28 1 -0.3634 -0.9277 -0.4420 29 1 1.6561 2.1295 0.0004 30 1 4.1148 2.1377 -0.0092 31 1 6.0316 0.0139 -0.8963 32 1 4.1462 -2.1343 0.0007 33 1 3.1709 -2.1712 1.8530 34 1 3.5627 -3.9100 1.8334 35 1 1.4320 -2.5385 3.5376 36 1 2.9542 -3.2585 4.1164 37 1 1.0677 -4.8128 4.4822 38 1 2.2039 -5.4812 3.2864 39 1 -2.5641 -5.7634 0.2776 40 1 1.5729 -5.4962 0.8300 41 1 0.1175 -4.6056 0.3144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397668936.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:55 Heat of formation + Delta-G solvation = -60.515785 kcal Electronic energy + Delta-G solvation = -23553.467453 eV Core-core repulsion = 20204.998809 eV Total energy + Delta-G solvation = -3348.468643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.41456 -38.86958 -37.11734 -36.35374 -33.49247 -32.00804 -31.63566 -31.10930 -29.63773 -26.53858 -25.11914 -24.94817 -23.04351 -21.99890 -21.49112 -20.07211 -18.86455 -17.68877 -16.82419 -16.14670 -16.00540 -15.72047 -15.24020 -14.65621 -14.58695 -14.13632 -13.75132 -13.62860 -13.43589 -13.38397 -12.74394 -12.62020 -12.52619 -12.17184 -11.84257 -11.70083 -11.51741 -11.48736 -11.00198 -10.90529 -10.80376 -10.51997 -10.39207 -10.23587 -9.89626 -9.35499 -9.15480 -8.98213 -8.81271 -8.47418 -8.44051 -7.76708 -6.00897 -4.09519 1.00866 1.18019 3.12309 3.31447 3.37609 3.38845 3.49187 3.71787 4.17031 4.42270 4.73310 4.81175 4.92563 5.10510 5.29306 5.32174 5.38219 5.52011 5.61714 5.70367 5.72955 5.83937 5.89193 6.01641 6.14719 6.19709 6.24664 6.31684 6.32455 6.58042 6.60474 6.66877 6.72648 6.85816 6.96762 7.13568 7.25295 7.50532 7.62220 7.85484 7.98127 8.21239 8.37257 8.79075 8.94631 9.56194 11.04614 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024843 B = 0.004552 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.824111 B = 6149.191082 C = 6710.047711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.044 4.044 3 C -0.111 4.111 4 C -0.130 4.130 5 C 0.089 3.911 6 O -0.498 6.498 7 C -0.113 4.113 8 C -0.099 4.099 9 C 0.550 3.450 10 O -0.529 6.529 11 N -0.595 5.595 12 C 0.101 3.899 13 C -0.133 4.133 14 C -0.111 4.111 15 C 0.041 3.959 16 H 0.029 0.971 17 C -0.522 4.522 18 H 0.058 0.942 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.112 3.888 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.388 0.612 32 H 0.133 0.867 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.264 0.736 40 H 0.044 0.956 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.543 12.670 -1.241 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.045 4.045 3 C -0.129 4.129 4 C -0.148 4.148 5 C 0.045 3.955 6 O -0.307 6.307 7 C -0.133 4.133 8 C -0.102 4.102 9 C 0.337 3.663 10 O -0.407 6.407 11 N -0.327 5.327 12 C -0.023 4.023 13 C -0.171 4.171 14 C -0.149 4.149 15 C 0.022 3.978 16 H 0.047 0.953 17 C -0.560 4.560 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.519 5.519 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.008 4.008 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.114 0.886 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.243 0.757 32 H 0.151 0.849 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.885 12.530 -1.231 16.643 hybrid contribution -0.210 -0.861 -0.327 0.944 sum 10.674 11.669 -1.558 15.891 Atomic orbital electron populations 1.21078 0.90209 1.05076 1.02795 1.19983 0.96879 0.91359 0.96233 1.20868 0.93430 0.97598 1.01008 1.21472 0.94442 0.97756 1.01164 1.18243 0.82835 0.91981 1.02487 1.84847 1.16016 1.96475 1.33408 1.21526 0.93128 0.98356 1.00244 1.19934 0.93186 0.94347 1.02759 1.18204 0.82703 0.83067 0.82348 1.90772 1.34574 1.78261 1.37081 1.48500 1.35432 1.21092 1.27666 1.21867 0.90151 1.01189 0.89078 1.21940 0.99842 1.00025 0.95323 1.21636 0.98696 0.94047 1.00484 1.18964 0.91949 0.97595 0.89325 0.95300 1.21042 1.14822 1.01241 1.18905 0.92388 1.25045 0.96782 0.96938 0.95185 1.69868 1.26910 1.34631 1.20471 0.86646 0.79267 0.84214 0.77811 1.20285 1.21247 1.20237 1.22355 0.94566 0.80432 1.03431 0.90899 0.91375 0.88633 0.85140 0.85328 0.75687 0.84882 0.90432 0.91933 0.92176 0.92186 0.92976 0.93158 0.92576 0.93810 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.67 36.01 0.35 -1.67 16 2 C -0.04 -0.64 5.91 -104.21 -0.62 -1.26 16 3 C -0.11 -1.30 9.70 -39.66 -0.38 -1.68 16 4 C -0.13 -1.42 9.98 -39.35 -0.39 -1.81 16 5 C 0.09 1.06 6.70 -39.28 -0.26 0.80 16 6 O -0.50 -5.05 13.50 -19.45 -0.26 -5.32 16 7 C -0.11 -1.57 7.40 -39.02 -0.29 -1.86 16 8 C -0.10 -1.62 4.84 -104.99 -0.51 -2.13 16 9 C 0.55 11.28 6.53 -12.32 -0.08 11.20 16 10 O -0.53 -12.82 14.55 5.32 0.08 -12.74 16 11 N -0.60 -12.13 2.97 -173.86 -0.52 -12.65 16 12 C 0.10 1.66 5.58 -3.71 -0.02 1.64 16 13 C -0.13 -2.23 6.08 -26.61 -0.16 -2.39 16 14 C -0.11 -2.22 5.11 -26.69 -0.14 -2.36 16 15 C 0.04 1.00 2.25 -91.65 -0.21 0.80 16 16 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 17 C -0.52 -14.06 8.56 -34.44 -0.29 -14.35 16 18 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 19 C 0.06 1.74 5.31 -17.82 -0.09 1.65 16 20 N -0.88 -25.47 11.40 55.43 0.63 -24.83 16 21 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 22 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.11 2.71 5.39 -3.70 -0.02 2.69 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 28 H 0.10 1.77 5.58 -51.93 -0.29 1.49 16 29 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 30 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 31 H 0.39 2.07 9.06 45.56 0.41 2.49 16 32 H 0.13 1.75 7.47 -52.48 -0.39 1.36 16 33 H 0.08 1.16 4.81 -51.92 -0.25 0.91 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.12 3.46 5.16 -51.93 -0.27 3.20 16 LS Contribution 329.78 15.07 4.97 4.97 Total: -1.00 -31.76 329.78 -8.22 -39.97 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -4.98 Total: 5.20 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -3.12 Total: -10.74 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.12 Total: -37.48 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.19 Total: -18.06 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.76 -8.22 -39.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397668936.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.541 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds