Wall clock time and date at job start Tue Mar 31 2020 06:27:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38001 * 120.01533 * 2 1 4 4 C 1.38247 * 120.20383 * 180.25497 * 3 2 1 5 5 C 1.38850 * 120.23835 * 359.74864 * 4 3 2 6 6 O 1.35907 * 119.98656 * 179.97438 * 5 4 3 7 7 C 1.38450 * 120.03019 * 359.97438 * 5 4 3 8 8 C 1.39524 * 119.79587 * 0.02562 * 7 5 4 9 9 C 1.47857 * 120.12039 * 179.97438 * 8 7 5 10 10 O 1.21550 * 120.00428 * 235.33297 * 9 8 7 11 11 N 1.34776 * 119.99893 * 55.33982 * 9 8 7 12 12 C 1.46925 * 120.63484 * 356.00359 * 11 9 8 13 13 C 1.53193 * 108.77596 * 126.39116 * 12 11 9 14 14 C 1.53039 * 109.31106 * 54.64393 * 13 12 11 15 15 C 1.53045 * 109.53413 * 298.62873 * 14 13 12 16 16 H 1.08998 * 109.50134 * 301.38476 * 15 14 13 17 17 C 1.50702 * 109.49741 * 181.31808 * 15 14 13 18 18 H 1.08005 * 119.99632 * 0.06757 * 17 15 14 19 19 C 1.37872 * 119.99938 * 179.79529 * 17 15 14 20 20 N 1.31517 * 120.00146 * 0.26972 * 19 17 15 21 21 Si 1.86806 * 119.99849 * 180.27874 * 19 17 15 22 22 H 1.48502 * 109.47186 * 59.99401 * 21 19 17 23 23 H 1.48496 * 109.47195 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.46681 * 299.99580 * 21 19 17 25 25 C 1.46939 * 120.60697 * 175.98857 * 11 9 8 26 26 H 1.09000 * 109.47064 * 274.53010 * 1 2 3 27 27 H 1.09000 * 109.47029 * 34.52367 * 1 2 3 28 28 H 1.08995 * 109.47408 * 154.52427 * 1 2 3 29 29 H 1.07998 * 119.90436 * 0.02562 * 3 2 1 30 30 H 1.08005 * 119.88111 * 179.76358 * 4 3 2 31 31 H 0.96709 * 114.00003 * 270.01734 * 6 5 4 32 32 H 1.08007 * 120.10361 * 180.02562 * 7 5 4 33 33 H 1.09008 * 109.58135 * 6.60979 * 12 11 9 34 34 H 1.08996 * 109.58919 * 246.18614 * 12 11 9 35 35 H 1.09002 * 109.49802 * 294.68932 * 13 12 11 36 36 H 1.09001 * 109.49808 * 174.59070 * 13 12 11 37 37 H 1.08997 * 109.45686 * 178.61492 * 14 13 12 38 38 H 1.09000 * 109.45259 * 58.64507 * 14 13 12 39 39 H 0.96997 * 119.99618 * 180.02562 * 20 19 17 40 40 H 1.08992 * 109.56247 * 113.80023 * 25 11 9 41 41 H 1.09006 * 109.61134 * 353.37684 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1949 0.0000 4 6 3.5798 1.1995 -0.0053 5 6 4.2830 0.0022 -0.0054 6 8 5.6420 0.0127 -0.0112 7 6 3.6004 -1.2023 0.0003 8 6 2.2052 -1.2084 0.0057 9 6 1.4689 -2.4906 0.0113 10 8 0.6437 -2.7214 -0.8508 11 7 1.7126 -3.4035 0.9724 12 6 2.7675 -3.1771 1.9697 13 6 2.1636 -3.3288 3.3694 14 6 1.4770 -4.6922 3.4793 15 6 0.3452 -4.7794 2.4528 16 1 -0.3695 -3.9757 2.6301 17 6 -0.3510 -6.1096 2.5836 18 1 -0.0203 -6.8215 3.3254 19 6 -1.4136 -6.4153 1.7600 20 7 -1.8163 -5.5484 0.8567 21 14 -2.2816 -8.0610 1.9274 22 1 -2.8408 -8.1887 3.2971 23 1 -3.3823 -8.1434 0.9341 24 1 -1.3117 -9.1590 1.6843 25 6 0.9279 -4.6438 1.0425 26 1 -0.3633 0.0812 1.0245 27 1 -0.3633 0.8467 -0.5824 28 1 -0.3634 -0.9277 -0.4420 29 1 1.6561 2.1295 0.0004 30 1 4.1148 2.1377 -0.0092 31 1 6.0316 0.0139 -0.8963 32 1 4.1462 -2.1343 0.0007 33 1 3.1709 -2.1712 1.8530 34 1 3.5627 -3.9100 1.8334 35 1 1.4320 -2.5385 3.5376 36 1 2.9542 -3.2585 4.1164 37 1 1.0677 -4.8128 4.4822 38 1 2.2039 -5.4812 3.2864 39 1 -2.5641 -5.7634 0.2776 40 1 1.5729 -5.4962 0.8300 41 1 0.1175 -4.6056 0.3144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397668936.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:46 Heat of formation + Delta-G solvation = -81.824587 kcal Electronic energy + Delta-G solvation = -23554.391472 eV Core-core repulsion = 20204.998809 eV Total energy + Delta-G solvation = -3349.392662 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 6.73 seconds Orbital eigenvalues (eV) -41.70069 -40.11515 -38.52011 -37.57023 -35.37732 -33.65001 -32.72194 -32.36808 -31.34114 -27.73905 -27.03599 -26.39187 -24.26843 -23.58662 -22.66808 -21.52560 -20.28270 -19.02619 -18.38040 -17.89148 -17.14100 -16.81309 -16.66385 -16.50970 -15.72599 -15.65018 -15.25657 -14.89483 -14.69478 -14.55629 -14.44248 -14.33821 -13.92291 -13.58073 -13.40966 -12.90116 -12.86492 -12.74259 -12.62313 -12.50143 -12.31236 -12.25018 -11.86579 -11.73933 -11.65339 -11.13058 -10.98458 -10.67065 -10.53009 -9.94968 -9.50640 -9.43584 -8.12286 -6.29556 -0.04238 0.21809 1.40537 1.42034 1.50461 1.66082 2.13893 2.41610 2.55094 3.15824 3.24757 3.53666 3.82036 3.91623 4.02829 4.10254 4.11877 4.28812 4.38865 4.53409 4.61114 4.67316 4.69590 4.72156 4.76466 4.79896 4.90943 5.04141 5.11752 5.20419 5.22280 5.24056 5.30995 5.33267 5.50516 5.54162 5.59690 5.76583 5.86074 5.96235 6.30432 6.57365 6.82522 6.86516 7.20772 7.40835 8.91326 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024843 B = 0.004552 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.824111 B = 6149.191082 C = 6710.047711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.063 4.063 3 C -0.099 4.099 4 C -0.116 4.116 5 C 0.102 3.898 6 O -0.500 6.500 7 C -0.120 4.120 8 C -0.122 4.122 9 C 0.544 3.456 10 O -0.582 6.582 11 N -0.601 5.601 12 C 0.099 3.901 13 C -0.126 4.126 14 C -0.105 4.105 15 C 0.040 3.960 16 H -0.014 1.014 17 C -0.537 4.537 18 H 0.063 0.937 19 C 0.011 3.989 20 N -0.916 5.916 21 Si 0.959 3.041 22 H -0.268 1.268 23 H -0.289 1.289 24 H -0.267 1.267 25 C 0.125 3.875 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.048 0.952 29 H 0.163 0.837 30 H 0.165 0.835 31 H 0.412 0.588 32 H 0.135 0.865 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.260 0.740 40 H 0.038 0.962 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.439 14.538 -0.147 20.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.064 4.064 3 C -0.116 4.116 4 C -0.134 4.134 5 C 0.057 3.943 6 O -0.314 6.314 7 C -0.139 4.139 8 C -0.125 4.125 9 C 0.333 3.667 10 O -0.464 6.464 11 N -0.331 5.331 12 C -0.023 4.023 13 C -0.164 4.164 14 C -0.142 4.142 15 C 0.021 3.979 16 H 0.005 0.995 17 C -0.576 4.576 18 H 0.081 0.919 19 C -0.189 4.189 20 N -0.554 5.554 21 Si 0.784 3.216 22 H -0.193 1.193 23 H -0.214 1.214 24 H -0.192 1.192 25 C 0.003 3.997 26 H 0.090 0.910 27 H 0.115 0.885 28 H 0.067 0.933 29 H 0.181 0.819 30 H 0.182 0.818 31 H 0.271 0.729 32 H 0.153 0.847 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.121 0.879 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.835 14.406 -0.115 19.974 hybrid contribution -1.031 -1.360 -0.690 1.841 sum 12.803 13.047 -0.804 18.297 Atomic orbital electron populations 1.20991 0.91286 1.03789 1.02777 1.20080 0.96472 0.92152 0.97702 1.21160 0.94012 0.97302 0.99175 1.21860 0.94077 0.98764 0.98696 1.18242 0.83664 0.91463 1.00928 1.84794 1.14723 1.96299 1.35541 1.21529 0.91856 0.99675 1.00812 1.19608 0.94152 0.92333 1.06427 1.18969 0.82125 0.84319 0.81248 1.90729 1.37040 1.79481 1.39119 1.48506 1.35878 1.19936 1.28781 1.22146 0.89278 1.03159 0.87691 1.21907 1.00536 0.97298 0.96633 1.21522 0.97324 0.96615 0.98779 1.18888 0.92782 0.95156 0.91079 0.99539 1.21481 1.15132 1.02254 1.18715 0.91872 1.25897 0.97713 1.00447 0.94811 1.70076 1.27276 1.36679 1.21399 0.85601 0.78083 0.79993 0.77949 1.19265 1.21445 1.19192 1.21778 0.93711 0.82232 1.01964 0.91036 0.88494 0.93295 0.81904 0.81764 0.72909 0.84685 0.88161 0.89984 0.93302 0.87881 0.92724 0.92283 0.93088 0.94384 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 9.67 71.24 0.69 -3.38 16 2 C -0.06 -1.81 5.91 -19.60 -0.12 -1.93 16 3 C -0.10 -1.95 9.70 22.22 0.22 -1.73 16 4 C -0.12 -1.97 9.98 22.42 0.22 -1.74 16 5 C 0.10 2.03 6.70 22.47 0.15 2.18 16 6 O -0.50 -7.87 13.50 -92.51 -1.25 -9.12 16 7 C -0.12 -3.09 7.40 22.63 0.17 -2.92 16 8 C -0.12 -4.00 4.84 -20.10 -0.10 -4.10 16 9 C 0.54 23.62 6.53 86.79 0.57 24.19 16 10 O -0.58 -30.82 14.55 -3.87 -0.06 -30.87 16 11 N -0.60 -25.49 2.97 -822.26 -2.44 -27.93 16 12 C 0.10 3.15 5.58 86.36 0.48 3.63 16 13 C -0.13 -4.01 6.08 30.67 0.19 -3.82 16 14 C -0.10 -4.16 5.11 30.62 0.16 -4.01 16 15 C 0.04 2.07 2.25 -11.46 -0.03 2.04 16 16 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 17 C -0.54 -29.94 8.56 25.60 0.22 -29.72 16 18 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 19 C 0.01 0.61 5.31 84.65 0.45 1.06 16 20 N -0.92 -56.22 11.40 21.45 0.24 -55.97 16 21 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 25 C 0.13 6.44 5.39 86.36 0.47 6.90 16 26 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.10 2.30 8.11 -2.39 -0.02 2.28 16 28 H 0.05 1.98 5.58 -2.39 -0.01 1.97 16 29 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 30 H 0.16 1.71 8.06 -2.91 -0.02 1.68 16 31 H 0.41 2.51 9.06 -74.05 -0.67 1.84 16 32 H 0.14 3.33 7.47 -2.91 -0.02 3.31 16 33 H 0.10 2.78 4.81 -2.38 -0.01 2.77 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 37 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 40 H 0.04 1.93 8.14 -2.39 -0.02 1.92 16 41 H 0.08 4.80 5.16 -2.38 -0.01 4.79 16 Total: -1.00 -75.78 329.78 2.63 -73.15 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.38 Total: 17.50 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 3.73 Total: -13.35 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -2.20 Total: -83.90 kcal Atomic # 8 Polarization: -38.69 SS G_CDS: -1.31 Total: -39.99 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -75.78 2.63 -73.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397668936.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.673 kcal (2) G-P(sol) polarization free energy of solvation -75.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.73 seconds