Wall clock time and date at job start Tue Mar 31 2020 06:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38002 * 120.01708 * 2 1 4 4 C 1.38238 * 120.20554 * 180.25409 * 3 2 1 5 5 C 1.38860 * 120.24202 * 359.44865 * 4 3 2 6 6 O 1.35901 * 119.98788 * 180.25724 * 5 4 3 7 7 C 1.38463 * 120.02343 * 0.54705 * 5 4 3 8 8 C 1.39520 * 119.79340 * 359.72914 * 7 5 4 9 9 C 1.47865 * 120.11519 * 179.97438 * 8 7 5 10 10 O 1.21552 * 119.99723 * 124.72427 * 9 8 7 11 11 N 1.34770 * 120.00286 * 304.72450 * 9 8 7 12 12 C 1.46933 * 120.63142 * 4.20758 * 11 9 8 13 13 C 1.53188 * 108.77473 * 233.58661 * 12 11 9 14 14 C 1.53043 * 109.30998 * 305.35957 * 13 12 11 15 15 C 1.53040 * 109.53761 * 61.36893 * 14 13 12 16 16 H 1.08994 * 109.49532 * 58.61924 * 15 14 13 17 17 C 1.50699 * 109.49732 * 178.68140 * 15 14 13 18 18 H 1.08008 * 120.00151 * 0.02562 * 17 15 14 19 19 C 1.37869 * 120.00189 * 180.02562 * 17 15 14 20 20 N 1.31520 * 119.99875 * 359.97438 * 19 17 15 21 21 Si 1.86807 * 120.00358 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46705 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47019 * 119.99681 * 21 19 17 24 24 H 1.48496 * 109.47087 * 239.99864 * 21 19 17 25 25 C 1.46924 * 120.63605 * 183.92267 * 11 9 8 26 26 H 1.08998 * 109.47217 * 85.11208 * 1 2 3 27 27 H 1.09006 * 109.46985 * 205.10807 * 1 2 3 28 28 H 1.09002 * 109.46839 * 325.10823 * 1 2 3 29 29 H 1.08001 * 119.89492 * 359.97438 * 3 2 1 30 30 H 1.08003 * 119.88190 * 179.70118 * 4 3 2 31 31 H 0.96701 * 113.99978 * 270.28742 * 6 5 4 32 32 H 1.07994 * 120.09931 * 179.75008 * 7 5 4 33 33 H 1.09005 * 109.58193 * 353.37108 * 12 11 9 34 34 H 1.09002 * 109.58837 * 113.65077 * 12 11 9 35 35 H 1.08995 * 109.50410 * 65.31631 * 13 12 11 36 36 H 1.08999 * 109.49638 * 185.41213 * 13 12 11 37 37 H 1.09001 * 109.45814 * 181.38934 * 14 13 12 38 38 H 1.09006 * 109.45946 * 301.34371 * 14 13 12 39 39 H 0.97001 * 119.99779 * 179.97438 * 20 19 17 40 40 H 1.08993 * 109.58887 * 246.20779 * 25 11 9 41 41 H 1.09006 * 109.58048 * 6.62833 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1949 0.0000 4 6 3.5798 1.1995 -0.0053 5 6 4.2831 0.0022 0.0009 6 8 5.6421 0.0127 0.0009 7 6 3.6004 -1.2024 0.0010 8 6 2.2052 -1.2085 0.0005 9 6 1.4689 -2.4907 0.0000 10 8 0.6460 -2.7193 0.8649 11 7 1.7101 -3.4060 -0.9593 12 6 2.7656 -3.1842 -1.9572 13 6 2.1613 -3.3376 -3.3565 14 6 1.4715 -4.6995 -3.4634 15 6 0.3395 -4.7819 -2.4367 16 1 -0.3733 -3.9770 -2.6158 17 6 -0.3598 -6.1107 -2.5646 18 1 -0.0300 -6.8256 -3.3040 19 6 -1.4208 -6.4137 -1.7380 20 7 -1.8222 -5.5434 -0.8373 21 14 -2.2872 -8.0611 -1.8960 22 1 -1.6481 -8.8549 -2.9761 23 1 -2.1849 -8.7994 -0.6116 24 1 -3.7177 -7.8383 -2.2263 25 6 0.9269 -4.6475 -1.0237 26 1 -0.3633 0.0876 -1.0239 27 1 -0.3633 -0.9306 0.4361 28 1 -0.3633 0.8430 0.5879 29 1 1.6560 2.1294 -0.0004 30 1 4.1147 2.1377 -0.0102 31 1 6.0354 0.0157 -0.8825 32 1 4.1462 -2.1343 0.0017 33 1 3.1714 -2.1790 -1.8425 34 1 3.5602 -3.9172 -1.8177 35 1 1.4317 -2.5459 -3.5265 36 1 2.9521 -3.2707 -4.1036 37 1 1.0619 -4.8214 -4.4661 38 1 2.1964 -5.4900 -3.2689 39 1 -2.5688 -5.7565 -0.2560 40 1 1.5734 -5.4988 -0.8112 41 1 0.1191 -4.6081 -0.2928 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397668939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:03 Heat of formation + Delta-G solvation = -60.513691 kcal Electronic energy + Delta-G solvation = -23562.338078 eV Core-core repulsion = 20213.869526 eV Total energy + Delta-G solvation = -3348.468553 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.42312 -38.87451 -37.12747 -36.35996 -33.50186 -32.02191 -31.64049 -31.12102 -29.64814 -26.54121 -25.13304 -24.96919 -23.04561 -22.02678 -21.50016 -20.07140 -18.89540 -17.75809 -16.75514 -16.16464 -15.89791 -15.81239 -15.37831 -14.67796 -14.52672 -14.10632 -13.83306 -13.61144 -13.47984 -13.33233 -12.76490 -12.62908 -12.54579 -12.16175 -11.87420 -11.75340 -11.59306 -11.40319 -11.03755 -10.93659 -10.79337 -10.50831 -10.40730 -10.26002 -9.91806 -9.36378 -9.17718 -8.98321 -8.82315 -8.47325 -8.45662 -7.78241 -6.02242 -4.10733 1.01277 1.17747 3.07845 3.28687 3.37529 3.40323 3.50095 3.79335 4.08625 4.41397 4.73014 4.81187 4.92544 5.09975 5.28000 5.31206 5.33443 5.48035 5.60902 5.66431 5.73544 5.83001 5.88328 5.96715 6.14669 6.15325 6.24471 6.28607 6.32264 6.56579 6.58186 6.64885 6.72274 6.83226 6.94174 7.11873 7.23476 7.50653 7.60881 7.83547 7.96635 8.19653 8.35800 8.78311 8.93810 9.55232 11.03363 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024809 B = 0.004565 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.341160 B = 6132.507220 C = 6705.502141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.044 4.044 3 C -0.111 4.111 4 C -0.130 4.130 5 C 0.089 3.911 6 O -0.498 6.498 7 C -0.113 4.113 8 C -0.099 4.099 9 C 0.550 3.450 10 O -0.528 6.528 11 N -0.596 5.596 12 C 0.101 3.899 13 C -0.133 4.133 14 C -0.111 4.111 15 C 0.041 3.959 16 H 0.029 0.971 17 C -0.521 4.521 18 H 0.059 0.941 19 C 0.063 3.937 20 N -0.881 5.881 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.284 1.284 25 C 0.112 3.888 26 H 0.072 0.928 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.388 0.612 32 H 0.133 0.867 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.263 0.737 40 H 0.044 0.956 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.570 12.641 -2.125 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.045 4.045 3 C -0.129 4.129 4 C -0.149 4.149 5 C 0.045 3.955 6 O -0.307 6.307 7 C -0.132 4.132 8 C -0.102 4.102 9 C 0.337 3.663 10 O -0.405 6.405 11 N -0.328 5.328 12 C -0.022 4.022 13 C -0.171 4.171 14 C -0.149 4.149 15 C 0.022 3.978 16 H 0.048 0.952 17 C -0.559 4.559 18 H 0.077 0.923 19 C -0.140 4.140 20 N -0.518 5.518 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.008 4.008 26 H 0.091 0.909 27 H 0.113 0.887 28 H 0.087 0.913 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.243 0.757 32 H 0.151 0.849 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.914 12.500 -0.913 16.619 hybrid contribution -0.223 -0.855 -0.623 1.081 sum 10.691 11.645 -1.535 15.883 Atomic orbital electron populations 1.21078 0.90206 1.05130 1.02732 1.19981 0.96876 0.91360 0.96291 1.20864 0.93433 0.97598 1.00966 1.21472 0.94453 0.97757 1.01220 1.18255 0.82815 0.91992 1.02445 1.84852 1.15957 1.96476 1.33450 1.21536 0.93133 0.98352 1.00202 1.19931 0.93198 0.94331 1.02738 1.18212 0.82685 0.83087 0.82314 1.90777 1.34648 1.78336 1.36777 1.48484 1.35509 1.21025 1.27753 1.21853 0.90220 1.01031 0.89107 1.21939 0.99814 1.00103 0.95249 1.21637 0.98708 0.94026 1.00503 1.19044 0.91904 0.97642 0.89244 0.95248 1.21117 1.14748 1.01198 1.18870 0.92289 1.25050 0.96817 0.96938 0.95183 1.69893 1.26948 1.34459 1.20532 0.86538 0.79494 0.84045 0.77954 1.19785 1.20951 1.20999 1.22436 0.94526 0.80388 1.03440 0.90924 0.88657 0.91344 0.85141 0.85325 0.75694 0.84879 0.90618 0.91958 0.92156 0.92244 0.92972 0.93155 0.92679 0.93791 0.85903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.68 36.01 0.35 -1.66 16 2 C -0.04 -0.65 5.91 -104.21 -0.62 -1.27 16 3 C -0.11 -1.29 9.70 -39.67 -0.38 -1.68 16 4 C -0.13 -1.43 9.98 -39.35 -0.39 -1.82 16 5 C 0.09 1.07 6.70 -39.27 -0.26 0.80 16 6 O -0.50 -5.07 13.50 -19.43 -0.26 -5.33 16 7 C -0.11 -1.57 7.39 -39.02 -0.29 -1.86 16 8 C -0.10 -1.62 4.85 -104.99 -0.51 -2.13 16 9 C 0.55 11.28 6.52 -12.32 -0.08 11.20 16 10 O -0.53 -12.89 14.57 5.32 0.08 -12.82 16 11 N -0.60 -11.97 2.97 -173.61 -0.51 -12.49 16 12 C 0.10 1.59 5.58 -3.71 -0.02 1.57 16 13 C -0.13 -2.12 6.08 -26.61 -0.16 -2.28 16 14 C -0.11 -2.17 5.10 -26.69 -0.14 -2.31 16 15 C 0.04 0.99 2.26 -91.43 -0.21 0.78 16 16 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 17 C -0.52 -13.94 8.56 -34.44 -0.29 -14.23 16 18 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 19 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 20 N -0.88 -25.39 11.41 55.43 0.63 -24.76 16 21 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C 0.11 2.69 5.42 -3.49 -0.02 2.67 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.09 1.78 5.57 -51.93 -0.29 1.49 16 28 H 0.07 0.83 8.12 -51.93 -0.42 0.41 16 29 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 30 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 31 H 0.39 1.99 9.06 45.56 0.41 2.40 16 32 H 0.13 1.76 7.46 -52.49 -0.39 1.36 16 33 H 0.08 1.03 4.79 -51.93 -0.25 0.78 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.12 3.44 5.17 -51.93 -0.27 3.18 16 LS Contribution 329.81 15.07 4.97 4.97 Total: -1.00 -31.99 329.81 -8.21 -40.20 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -4.98 Total: 4.73 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -3.12 Total: -10.58 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.12 Total: -37.25 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.18 Total: -18.14 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.99 -8.21 -40.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397668939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.311 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds