Wall clock time and date at job start Tue Mar 31 2020 06:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38002 * 120.01708 * 2 1 4 4 C 1.38238 * 120.20554 * 180.25409 * 3 2 1 5 5 C 1.38860 * 120.24202 * 359.44865 * 4 3 2 6 6 O 1.35901 * 119.98788 * 180.25724 * 5 4 3 7 7 C 1.38463 * 120.02343 * 0.54705 * 5 4 3 8 8 C 1.39520 * 119.79340 * 359.72914 * 7 5 4 9 9 C 1.47865 * 120.11519 * 179.97438 * 8 7 5 10 10 O 1.21552 * 119.99723 * 124.72427 * 9 8 7 11 11 N 1.34770 * 120.00286 * 304.72450 * 9 8 7 12 12 C 1.46933 * 120.63142 * 4.20758 * 11 9 8 13 13 C 1.53188 * 108.77473 * 233.58661 * 12 11 9 14 14 C 1.53043 * 109.30998 * 305.35957 * 13 12 11 15 15 C 1.53040 * 109.53761 * 61.36893 * 14 13 12 16 16 H 1.08994 * 109.49532 * 58.61924 * 15 14 13 17 17 C 1.50699 * 109.49732 * 178.68140 * 15 14 13 18 18 H 1.08008 * 120.00151 * 0.02562 * 17 15 14 19 19 C 1.37869 * 120.00189 * 180.02562 * 17 15 14 20 20 N 1.31520 * 119.99875 * 359.97438 * 19 17 15 21 21 Si 1.86807 * 120.00358 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46705 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47019 * 119.99681 * 21 19 17 24 24 H 1.48496 * 109.47087 * 239.99864 * 21 19 17 25 25 C 1.46924 * 120.63605 * 183.92267 * 11 9 8 26 26 H 1.08998 * 109.47217 * 85.11208 * 1 2 3 27 27 H 1.09006 * 109.46985 * 205.10807 * 1 2 3 28 28 H 1.09002 * 109.46839 * 325.10823 * 1 2 3 29 29 H 1.08001 * 119.89492 * 359.97438 * 3 2 1 30 30 H 1.08003 * 119.88190 * 179.70118 * 4 3 2 31 31 H 0.96701 * 113.99978 * 270.28742 * 6 5 4 32 32 H 1.07994 * 120.09931 * 179.75008 * 7 5 4 33 33 H 1.09005 * 109.58193 * 353.37108 * 12 11 9 34 34 H 1.09002 * 109.58837 * 113.65077 * 12 11 9 35 35 H 1.08995 * 109.50410 * 65.31631 * 13 12 11 36 36 H 1.08999 * 109.49638 * 185.41213 * 13 12 11 37 37 H 1.09001 * 109.45814 * 181.38934 * 14 13 12 38 38 H 1.09006 * 109.45946 * 301.34371 * 14 13 12 39 39 H 0.97001 * 119.99779 * 179.97438 * 20 19 17 40 40 H 1.08993 * 109.58887 * 246.20779 * 25 11 9 41 41 H 1.09006 * 109.58048 * 6.62833 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1949 0.0000 4 6 3.5798 1.1995 -0.0053 5 6 4.2831 0.0022 0.0009 6 8 5.6421 0.0127 0.0009 7 6 3.6004 -1.2024 0.0010 8 6 2.2052 -1.2085 0.0005 9 6 1.4689 -2.4907 0.0000 10 8 0.6460 -2.7193 0.8649 11 7 1.7101 -3.4060 -0.9593 12 6 2.7656 -3.1842 -1.9572 13 6 2.1613 -3.3376 -3.3565 14 6 1.4715 -4.6995 -3.4634 15 6 0.3395 -4.7819 -2.4367 16 1 -0.3733 -3.9770 -2.6158 17 6 -0.3598 -6.1107 -2.5646 18 1 -0.0300 -6.8256 -3.3040 19 6 -1.4208 -6.4137 -1.7380 20 7 -1.8222 -5.5434 -0.8373 21 14 -2.2872 -8.0611 -1.8960 22 1 -1.6481 -8.8549 -2.9761 23 1 -2.1849 -8.7994 -0.6116 24 1 -3.7177 -7.8383 -2.2263 25 6 0.9269 -4.6475 -1.0237 26 1 -0.3633 0.0876 -1.0239 27 1 -0.3633 -0.9306 0.4361 28 1 -0.3633 0.8430 0.5879 29 1 1.6560 2.1294 -0.0004 30 1 4.1147 2.1377 -0.0102 31 1 6.0354 0.0157 -0.8825 32 1 4.1462 -2.1343 0.0017 33 1 3.1714 -2.1790 -1.8425 34 1 3.5602 -3.9172 -1.8177 35 1 1.4317 -2.5459 -3.5265 36 1 2.9521 -3.2707 -4.1036 37 1 1.0619 -4.8214 -4.4661 38 1 2.1964 -5.4900 -3.2689 39 1 -2.5688 -5.7565 -0.2560 40 1 1.5734 -5.4988 -0.8112 41 1 0.1191 -4.6081 -0.2928 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397668939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:03 Heat of formation + Delta-G solvation = -82.214804 kcal Electronic energy + Delta-G solvation = -23563.279109 eV Core-core repulsion = 20213.869526 eV Total energy + Delta-G solvation = -3349.409584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -41.69836 -40.10788 -38.50996 -37.57085 -35.37136 -33.64468 -32.72148 -32.36275 -31.32357 -27.73864 -27.03446 -26.38802 -24.25851 -23.58165 -22.66525 -21.51423 -20.28042 -19.07139 -18.38041 -17.81049 -17.06885 -16.94619 -16.66838 -16.51150 -15.75248 -15.57545 -15.24293 -14.96735 -14.63048 -14.54775 -14.43700 -14.31110 -13.91929 -13.57501 -13.40710 -12.92790 -12.88298 -12.74460 -12.65521 -12.45239 -12.30741 -12.22781 -11.83727 -11.74473 -11.64050 -11.12644 -10.97604 -10.66771 -10.54547 -9.94702 -9.49366 -9.43409 -8.12873 -6.29794 -0.03522 0.21914 1.38680 1.40574 1.52480 1.65308 2.12653 2.41127 2.60604 3.15516 3.21273 3.54791 3.82510 3.92326 4.03874 4.10843 4.13492 4.30182 4.39187 4.54634 4.61886 4.67709 4.69708 4.72457 4.76967 4.80725 4.91445 5.05245 5.12504 5.21822 5.22977 5.25136 5.31729 5.33664 5.51055 5.54762 5.60718 5.77303 5.86423 5.96291 6.30530 6.58049 6.83040 6.89367 7.21417 7.40792 8.91100 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024809 B = 0.004565 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.341160 B = 6132.507220 C = 6705.502141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.064 4.064 3 C -0.098 4.098 4 C -0.117 4.117 5 C 0.103 3.897 6 O -0.502 6.502 7 C -0.120 4.120 8 C -0.122 4.122 9 C 0.544 3.456 10 O -0.584 6.584 11 N -0.600 5.600 12 C 0.098 3.902 13 C -0.125 4.125 14 C -0.106 4.106 15 C 0.040 3.960 16 H -0.013 1.013 17 C -0.535 4.535 18 H 0.063 0.937 19 C 0.010 3.990 20 N -0.916 5.916 21 Si 0.958 3.042 22 H -0.259 1.259 23 H -0.284 1.284 24 H -0.282 1.282 25 C 0.125 3.875 26 H 0.073 0.927 27 H 0.047 0.953 28 H 0.095 0.905 29 H 0.163 0.837 30 H 0.165 0.835 31 H 0.413 0.587 32 H 0.136 0.864 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.106 0.894 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.259 0.741 40 H 0.038 0.962 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.611 14.587 -3.574 20.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.065 4.065 3 C -0.116 4.116 4 C -0.135 4.135 5 C 0.058 3.942 6 O -0.315 6.315 7 C -0.139 4.139 8 C -0.125 4.125 9 C 0.333 3.667 10 O -0.466 6.466 11 N -0.331 5.331 12 C -0.024 4.024 13 C -0.163 4.163 14 C -0.143 4.143 15 C 0.021 3.979 16 H 0.005 0.995 17 C -0.573 4.573 18 H 0.081 0.919 19 C -0.189 4.189 20 N -0.555 5.555 21 Si 0.783 3.217 22 H -0.183 1.183 23 H -0.210 1.210 24 H -0.208 1.208 25 C 0.002 3.998 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.114 0.886 29 H 0.181 0.819 30 H 0.182 0.818 31 H 0.273 0.727 32 H 0.154 0.846 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.067 0.933 36 H 0.124 0.876 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.056 0.944 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.012 14.454 -2.421 20.276 hybrid contribution -1.087 -1.383 -0.171 1.767 sum 12.925 13.071 -2.592 18.564 Atomic orbital electron populations 1.20989 0.91310 1.03664 1.02867 1.20077 0.96454 0.92164 0.97783 1.21154 0.94028 0.97292 0.99137 1.21859 0.94077 0.98772 0.98781 1.18251 0.83644 0.91468 1.00837 1.84803 1.14671 1.96299 1.35739 1.21542 0.91843 0.99684 1.00830 1.19608 0.94173 0.92309 1.06384 1.18989 0.82096 0.84392 0.81256 1.90733 1.37255 1.79616 1.38971 1.48498 1.35992 1.19726 1.28874 1.22186 0.89222 1.03385 0.87580 1.21902 1.00582 0.97149 0.96624 1.21527 0.97279 0.96817 0.98692 1.18966 0.92825 0.95114 0.91002 0.99462 1.21552 1.14978 1.02239 1.18569 0.91855 1.25899 0.97793 1.00398 0.94855 1.70098 1.27377 1.36527 1.21499 0.85504 0.78255 0.79833 0.78078 1.18323 1.20958 1.20798 1.21854 0.93665 0.82244 1.01988 0.90792 0.93437 0.88645 0.81931 0.81766 0.72712 0.84641 0.87767 0.89958 0.93253 0.87600 0.92741 0.92326 0.93143 0.94387 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 9.68 71.24 0.69 -3.38 16 2 C -0.06 -1.83 5.91 -19.60 -0.12 -1.95 16 3 C -0.10 -1.94 9.70 22.21 0.22 -1.72 16 4 C -0.12 -1.98 9.98 22.42 0.22 -1.75 16 5 C 0.10 2.04 6.70 22.47 0.15 2.19 16 6 O -0.50 -7.84 13.50 -92.43 -1.25 -9.09 16 7 C -0.12 -3.08 7.39 22.63 0.17 -2.92 16 8 C -0.12 -3.98 4.85 -20.10 -0.10 -4.08 16 9 C 0.54 23.60 6.52 86.79 0.57 24.17 16 10 O -0.58 -31.26 14.57 -3.88 -0.06 -31.32 16 11 N -0.60 -25.09 2.97 -821.45 -2.44 -27.53 16 12 C 0.10 2.92 5.58 86.36 0.48 3.40 16 13 C -0.12 -3.73 6.08 30.67 0.19 -3.54 16 14 C -0.11 -4.07 5.10 30.62 0.16 -3.92 16 15 C 0.04 2.04 2.26 -11.32 -0.03 2.02 16 16 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 17 C -0.53 -29.62 8.56 25.60 0.22 -29.40 16 18 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 19 C 0.01 0.56 5.30 84.65 0.45 1.01 16 20 N -0.92 -56.26 11.41 21.45 0.24 -56.02 16 21 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 22 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 24 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 25 C 0.12 6.36 5.42 86.51 0.47 6.83 16 26 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.05 1.94 5.57 -2.38 -0.01 1.93 16 28 H 0.09 2.30 8.12 -2.39 -0.02 2.28 16 29 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 30 H 0.16 1.70 8.06 -2.91 -0.02 1.67 16 31 H 0.41 2.07 9.06 -74.06 -0.67 1.40 16 32 H 0.14 3.32 7.46 -2.91 -0.02 3.30 16 33 H 0.10 2.56 4.79 -2.38 -0.01 2.55 16 34 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 40 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.08 4.67 5.17 -2.38 -0.01 4.65 16 Total: -1.00 -77.14 329.81 2.64 -74.50 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.38 Total: 15.91 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 3.74 Total: -13.04 kcal Atomic # 7 Polarization: -81.36 SS G_CDS: -2.19 Total: -83.55 kcal Atomic # 8 Polarization: -39.10 SS G_CDS: -1.30 Total: -40.41 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -77.14 2.64 -74.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397668939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.713 kcal (2) G-P(sol) polarization free energy of solvation -77.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds