Wall clock time and date at job start Tue Mar 31 2020 06:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38291 * 119.88246 * 2 1 4 4 C 1.37964 * 120.20866 * 179.72351 * 3 2 1 5 5 C 1.39604 * 119.96510 * 0.50678 * 4 3 2 6 6 C 1.47859 * 120.11885 * 179.77006 * 5 4 3 7 7 O 1.21550 * 119.99820 * 141.54453 * 6 5 4 8 8 N 1.34772 * 119.99731 * 321.54752 * 6 5 4 9 9 C 1.46920 * 120.63199 * 355.18089 * 8 6 5 10 10 C 1.53203 * 108.77458 * 233.60486 * 9 8 6 11 11 C 1.53034 * 109.31416 * 305.36581 * 10 9 8 12 12 C 1.53047 * 109.53880 * 61.36461 * 11 10 9 13 13 H 1.09003 * 109.49576 * 58.61327 * 12 11 10 14 14 C 1.50695 * 109.49877 * 178.68159 * 12 11 10 15 15 H 1.08001 * 120.00161 * 359.97438 * 14 12 11 16 16 C 1.37878 * 120.00101 * 180.27467 * 14 12 11 17 17 N 1.31514 * 119.99909 * 359.72590 * 16 14 12 18 18 Si 1.86798 * 120.00356 * 179.72596 * 16 14 12 19 19 H 1.48507 * 109.46774 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47345 * 119.99532 * 18 16 14 21 21 H 1.48499 * 109.47173 * 240.00338 * 18 16 14 22 22 C 1.46930 * 120.62530 * 175.18061 * 8 6 5 23 23 C 1.39484 * 119.76331 * 359.49354 * 5 4 3 24 24 C 1.38498 * 119.79323 * 0.25305 * 23 5 4 25 25 O 1.35918 * 119.98401 * 180.02562 * 24 23 5 26 26 H 1.08998 * 109.47212 * 270.02432 * 1 2 3 27 27 H 1.09000 * 109.47062 * 30.02525 * 1 2 3 28 28 H 1.09003 * 109.47029 * 150.02823 * 1 2 3 29 29 H 1.07999 * 119.89117 * 359.97438 * 3 2 1 30 30 H 1.07995 * 120.02009 * 180.27718 * 4 3 2 31 31 H 1.09003 * 109.59049 * 113.82548 * 9 8 6 32 32 H 1.09001 * 109.70743 * 353.46406 * 9 8 6 33 33 H 1.09002 * 109.49616 * 185.40923 * 10 9 8 34 34 H 1.09006 * 109.51828 * 65.33919 * 10 9 8 35 35 H 1.08998 * 109.46200 * 301.34728 * 11 10 9 36 36 H 1.09001 * 109.45817 * 181.38294 * 11 10 9 37 37 H 0.97001 * 120.00282 * 180.02562 * 17 16 14 38 38 H 1.08994 * 109.59240 * 6.60533 * 22 8 6 39 39 H 1.09001 * 109.58311 * 246.17740 * 22 8 6 40 40 H 1.08002 * 120.10425 * 180.23196 * 23 5 4 41 41 H 0.96697 * 113.99952 * 89.99940 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1990 0.0000 4 6 3.5756 1.2069 0.0058 5 6 4.2797 0.0015 0.0009 6 6 5.7583 0.0060 0.0019 7 8 6.3681 -0.8194 0.6533 8 7 6.4298 0.9253 -0.7194 9 6 5.7109 1.8618 -1.5938 10 6 6.3052 1.7758 -3.0032 11 6 7.8149 2.0158 -2.9314 12 6 8.4647 0.9333 -2.0663 13 1 8.2530 -0.0478 -2.4913 14 6 9.9551 1.1517 -2.0227 15 1 10.3955 1.9794 -2.5586 16 6 10.7572 0.2911 -1.3036 17 7 10.2210 -0.7171 -0.6513 18 14 12.6055 0.5572 -1.2557 19 1 12.9547 1.7517 -2.0661 20 1 13.0392 0.7674 0.1488 21 1 13.2920 -0.6360 -1.8126 22 6 7.8949 1.0098 -0.6463 23 6 3.5835 -1.2072 0.0009 24 6 2.1985 -1.2035 0.0005 25 8 1.5162 -2.3790 0.0011 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8903 -0.5134 29 1 1.6523 2.1322 -0.0004 30 1 4.1105 2.1450 0.0103 31 1 5.8218 2.8768 -1.2119 32 1 4.6540 1.5970 -1.6261 33 1 5.8461 2.5333 -3.6385 34 1 6.1133 0.7869 -3.4196 35 1 8.0065 2.9949 -2.4925 36 1 8.2365 1.9794 -3.9359 37 1 10.7852 -1.3224 -0.1451 38 1 8.2797 0.1804 -0.0530 39 1 8.1838 1.9552 -0.1871 40 1 4.1227 -2.1429 0.0010 41 1 1.3185 -2.7186 0.8846 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397674394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:16 Heat of formation + Delta-G solvation = -57.267191 kcal Electronic energy + Delta-G solvation = -23164.440019 eV Core-core repulsion = 19816.112246 eV Total energy + Delta-G solvation = -3348.327774 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.39872 -39.02393 -36.80383 -36.46963 -33.54295 -32.69009 -31.73308 -30.20836 -29.64777 -27.50192 -25.08087 -24.62746 -22.79578 -21.99927 -21.72615 -20.10969 -18.87726 -17.91238 -16.64765 -16.17633 -16.01808 -15.73813 -15.06920 -14.77444 -14.58895 -14.21636 -13.88763 -13.66426 -13.47867 -13.21837 -12.81259 -12.60144 -12.55142 -12.29607 -12.11971 -11.86339 -11.83457 -11.54283 -10.99143 -10.82482 -10.72601 -10.48184 -10.36948 -10.23377 -9.88691 -9.36958 -9.12524 -8.91506 -8.88916 -8.53691 -8.43711 -7.75482 -5.99160 -4.08278 0.91109 1.19762 3.06076 3.30176 3.38691 3.41681 3.58416 3.82330 4.15569 4.43270 4.64674 4.71194 4.91454 5.01903 5.22465 5.30711 5.36470 5.38928 5.46020 5.51328 5.59277 5.69023 5.80551 5.90995 5.98337 6.14338 6.20000 6.31152 6.33571 6.35231 6.59459 6.63726 6.68301 6.85842 6.97638 7.14257 7.26764 7.52043 7.64270 7.87251 7.99606 8.22622 8.38702 8.81587 8.96495 9.57528 11.06109 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029007 B = 0.003975 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.056807 B = 7042.840826 C = 7635.797555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.115 4.115 4 C -0.097 4.097 5 C -0.105 4.105 6 C 0.545 3.455 7 O -0.530 6.530 8 N -0.597 5.597 9 C 0.096 3.904 10 C -0.134 4.134 11 C -0.111 4.111 12 C 0.039 3.961 13 H 0.029 0.971 14 C -0.521 4.521 15 H 0.059 0.941 16 C 0.062 3.938 17 N -0.880 5.880 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 C 0.112 3.888 23 C -0.090 4.090 24 C 0.095 3.905 25 O -0.494 6.494 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.130 0.870 30 H 0.136 0.864 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.050 0.950 36 H 0.051 0.949 37 H 0.263 0.737 38 H 0.123 0.877 39 H 0.044 0.956 40 H 0.138 0.862 41 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.111 4.171 1.329 19.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.100 4.100 3 C -0.133 4.133 4 C -0.115 4.115 5 C -0.108 4.108 6 C 0.332 3.668 7 O -0.407 6.407 8 N -0.329 5.329 9 C -0.027 4.027 10 C -0.173 4.173 11 C -0.148 4.148 12 C 0.020 3.980 13 H 0.047 0.953 14 C -0.559 4.559 15 H 0.077 0.923 16 C -0.141 4.141 17 N -0.517 5.517 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.007 4.007 23 C -0.109 4.109 24 C 0.050 3.950 25 O -0.304 6.304 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.141 0.859 39 H 0.062 0.938 40 H 0.155 0.845 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -18.667 3.639 1.179 19.055 hybrid contribution 1.025 0.074 0.495 1.141 sum -17.642 3.713 1.674 18.106 Atomic orbital electron populations 1.20712 0.90635 1.03280 1.02292 1.20332 0.96739 0.92556 1.00388 1.20864 0.93693 0.97292 1.01470 1.21497 0.94193 0.97703 0.98129 1.20053 0.94302 0.93606 1.02865 1.18258 0.86227 0.81645 0.80673 1.90806 1.69164 1.37466 1.43304 1.48417 1.09635 1.32699 1.42153 1.22055 0.96439 0.93099 0.91086 1.21960 0.98391 1.01457 0.95454 1.21631 0.92384 1.00292 1.00521 1.18976 0.94455 0.94159 0.90394 0.95266 1.21112 0.90924 1.12596 1.31304 0.92293 1.25065 0.98733 0.94946 0.95331 1.69903 1.35175 1.15218 1.31427 0.86535 0.85626 0.78075 0.77770 1.19790 1.20972 1.21015 1.22333 0.73358 1.02870 1.02185 1.21493 0.93072 0.98523 0.97800 1.18112 0.89337 0.85028 1.02504 1.84812 1.75957 1.36204 1.33421 0.91249 0.91369 0.90809 0.85180 0.84665 0.91935 0.89963 0.92169 0.92139 0.93170 0.93000 0.92694 0.85901 0.93769 0.84461 0.75639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.78 36.00 0.35 -0.53 16 2 C -0.10 -1.08 5.90 -104.39 -0.62 -1.69 16 3 C -0.12 -1.22 9.67 -39.66 -0.38 -1.60 16 4 C -0.10 -1.24 7.35 -39.17 -0.29 -1.53 16 5 C -0.10 -1.71 5.21 -104.99 -0.55 -2.25 16 6 C 0.55 11.37 7.35 -12.33 -0.09 11.28 16 7 O -0.53 -13.36 16.31 5.32 0.09 -13.27 16 8 N -0.60 -12.16 2.97 -173.87 -0.52 -12.68 16 9 C 0.10 1.52 4.84 -3.71 -0.02 1.51 16 10 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 11 C -0.11 -2.21 5.11 -26.69 -0.14 -2.34 16 12 C 0.04 0.98 2.25 -91.65 -0.21 0.77 16 13 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 14 C -0.52 -14.15 8.56 -34.44 -0.29 -14.45 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.73 5.31 -17.82 -0.09 1.63 16 17 N -0.88 -25.84 11.41 55.43 0.63 -25.21 16 18 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C 0.11 2.74 5.41 -3.71 -0.02 2.72 16 23 C -0.09 -1.37 9.56 -39.02 -0.37 -1.74 16 24 C 0.09 1.19 6.67 -39.27 -0.26 0.93 16 25 O -0.49 -5.34 12.53 -19.48 -0.24 -5.59 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 28 H 0.07 0.60 7.52 -51.93 -0.39 0.21 16 29 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.14 1.57 6.33 -52.49 -0.33 1.23 16 31 H 0.06 0.88 8.10 -51.93 -0.42 0.46 16 32 H 0.08 1.13 4.56 -51.93 -0.24 0.89 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.12 3.51 5.13 -51.93 -0.27 3.24 16 39 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.14 2.21 8.04 -52.49 -0.42 1.79 16 41 H 0.39 2.38 9.06 45.56 0.41 2.79 16 LS Contribution 331.06 15.07 4.99 4.99 Total: -1.00 -32.98 331.06 -8.21 -41.19 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -5.00 Total: 3.96 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -3.14 Total: -9.68 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.12 Total: -37.89 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.16 Total: -18.86 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.98 -8.21 -41.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397674394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.077 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds