Wall clock time and date at job start Tue Mar 31 2020 06:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38291 * 119.88246 * 2 1 4 4 C 1.37964 * 120.20866 * 179.72351 * 3 2 1 5 5 C 1.39604 * 119.96510 * 0.50678 * 4 3 2 6 6 C 1.47859 * 120.11885 * 179.77006 * 5 4 3 7 7 O 1.21550 * 119.99820 * 141.54453 * 6 5 4 8 8 N 1.34772 * 119.99731 * 321.54752 * 6 5 4 9 9 C 1.46920 * 120.63199 * 355.18089 * 8 6 5 10 10 C 1.53203 * 108.77458 * 233.60486 * 9 8 6 11 11 C 1.53034 * 109.31416 * 305.36581 * 10 9 8 12 12 C 1.53047 * 109.53880 * 61.36461 * 11 10 9 13 13 H 1.09003 * 109.49576 * 58.61327 * 12 11 10 14 14 C 1.50695 * 109.49877 * 178.68159 * 12 11 10 15 15 H 1.08001 * 120.00161 * 359.97438 * 14 12 11 16 16 C 1.37878 * 120.00101 * 180.27467 * 14 12 11 17 17 N 1.31514 * 119.99909 * 359.72590 * 16 14 12 18 18 Si 1.86798 * 120.00356 * 179.72596 * 16 14 12 19 19 H 1.48507 * 109.46774 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47345 * 119.99532 * 18 16 14 21 21 H 1.48499 * 109.47173 * 240.00338 * 18 16 14 22 22 C 1.46930 * 120.62530 * 175.18061 * 8 6 5 23 23 C 1.39484 * 119.76331 * 359.49354 * 5 4 3 24 24 C 1.38498 * 119.79323 * 0.25305 * 23 5 4 25 25 O 1.35918 * 119.98401 * 180.02562 * 24 23 5 26 26 H 1.08998 * 109.47212 * 270.02432 * 1 2 3 27 27 H 1.09000 * 109.47062 * 30.02525 * 1 2 3 28 28 H 1.09003 * 109.47029 * 150.02823 * 1 2 3 29 29 H 1.07999 * 119.89117 * 359.97438 * 3 2 1 30 30 H 1.07995 * 120.02009 * 180.27718 * 4 3 2 31 31 H 1.09003 * 109.59049 * 113.82548 * 9 8 6 32 32 H 1.09001 * 109.70743 * 353.46406 * 9 8 6 33 33 H 1.09002 * 109.49616 * 185.40923 * 10 9 8 34 34 H 1.09006 * 109.51828 * 65.33919 * 10 9 8 35 35 H 1.08998 * 109.46200 * 301.34728 * 11 10 9 36 36 H 1.09001 * 109.45817 * 181.38294 * 11 10 9 37 37 H 0.97001 * 120.00282 * 180.02562 * 17 16 14 38 38 H 1.08994 * 109.59240 * 6.60533 * 22 8 6 39 39 H 1.09001 * 109.58311 * 246.17740 * 22 8 6 40 40 H 1.08002 * 120.10425 * 180.23196 * 23 5 4 41 41 H 0.96697 * 113.99952 * 89.99940 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1990 0.0000 4 6 3.5756 1.2069 0.0058 5 6 4.2797 0.0015 0.0009 6 6 5.7583 0.0060 0.0019 7 8 6.3681 -0.8194 0.6533 8 7 6.4298 0.9253 -0.7194 9 6 5.7109 1.8618 -1.5938 10 6 6.3052 1.7758 -3.0032 11 6 7.8149 2.0158 -2.9314 12 6 8.4647 0.9333 -2.0663 13 1 8.2530 -0.0478 -2.4913 14 6 9.9551 1.1517 -2.0227 15 1 10.3955 1.9794 -2.5586 16 6 10.7572 0.2911 -1.3036 17 7 10.2210 -0.7171 -0.6513 18 14 12.6055 0.5572 -1.2557 19 1 12.9547 1.7517 -2.0661 20 1 13.0392 0.7674 0.1488 21 1 13.2920 -0.6360 -1.8126 22 6 7.8949 1.0098 -0.6463 23 6 3.5835 -1.2072 0.0009 24 6 2.1985 -1.2035 0.0005 25 8 1.5162 -2.3790 0.0011 26 1 -0.3633 0.0004 1.0276 27 1 -0.3633 0.8898 -0.5142 28 1 -0.3633 -0.8903 -0.5134 29 1 1.6523 2.1322 -0.0004 30 1 4.1105 2.1450 0.0103 31 1 5.8218 2.8768 -1.2119 32 1 4.6540 1.5970 -1.6261 33 1 5.8461 2.5333 -3.6385 34 1 6.1133 0.7869 -3.4196 35 1 8.0065 2.9949 -2.4925 36 1 8.2365 1.9794 -3.9359 37 1 10.7852 -1.3224 -0.1451 38 1 8.2797 0.1804 -0.0530 39 1 8.1838 1.9552 -0.1871 40 1 4.1227 -2.1429 0.0010 41 1 1.3185 -2.7186 0.8846 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397674394.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:15 Heat of formation + Delta-G solvation = -80.074847 kcal Electronic energy + Delta-G solvation = -23165.429034 eV Core-core repulsion = 19816.112246 eV Total energy + Delta-G solvation = -3349.316788 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.65664 -40.29909 -38.39111 -37.55683 -35.36497 -33.89763 -33.29989 -31.68305 -30.92148 -28.58878 -26.98025 -26.10490 -23.92009 -23.31553 -23.08683 -21.55028 -20.34498 -19.21567 -18.39315 -17.68214 -17.28347 -16.86048 -16.58747 -16.34664 -15.87029 -15.73332 -15.24189 -14.91625 -14.67918 -14.50789 -14.29778 -14.15055 -13.90730 -13.51785 -13.22725 -13.12894 -12.94755 -12.92452 -12.63141 -12.40640 -12.28641 -12.14212 -11.85227 -11.69415 -11.60264 -11.16285 -10.97780 -10.68459 -10.54954 -9.91193 -9.58250 -9.40443 -8.12582 -6.30617 -0.14375 0.22356 1.38815 1.39985 1.52567 1.69943 2.12637 2.40940 2.62670 3.15058 3.23783 3.51996 3.81852 3.93100 3.99352 4.12340 4.18180 4.30036 4.38251 4.55749 4.62861 4.72184 4.75582 4.78673 4.83406 4.88237 4.91961 5.06706 5.16537 5.22561 5.24573 5.26427 5.31170 5.35832 5.47130 5.52414 5.60960 5.78742 5.86987 5.97191 6.30100 6.58301 6.79016 6.83095 7.21205 7.40225 8.91127 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.029007 B = 0.003975 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.056807 B = 7042.840826 C = 7635.797555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.088 4.088 3 C -0.099 4.099 4 C -0.093 4.093 5 C -0.128 4.128 6 C 0.536 3.464 7 O -0.594 6.594 8 N -0.600 5.600 9 C 0.092 3.908 10 C -0.129 4.129 11 C -0.104 4.104 12 C 0.037 3.963 13 H -0.019 1.019 14 C -0.534 4.534 15 H 0.065 0.935 16 C 0.007 3.993 17 N -0.918 5.918 18 Si 0.961 3.039 19 H -0.258 1.258 20 H -0.282 1.282 21 H -0.284 1.284 22 C 0.125 3.875 23 C -0.114 4.114 24 C 0.096 3.904 25 O -0.501 6.501 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.175 0.825 30 H 0.152 0.848 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.259 0.741 38 H 0.074 0.926 39 H 0.045 0.955 40 H 0.108 0.892 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.243 7.344 0.554 23.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.089 4.089 3 C -0.117 4.117 4 C -0.111 4.111 5 C -0.132 4.132 6 C 0.326 3.674 7 O -0.476 6.476 8 N -0.330 5.330 9 C -0.029 4.029 10 C -0.167 4.167 11 C -0.142 4.142 12 C 0.018 3.982 13 H -0.001 1.001 14 C -0.573 4.573 15 H 0.083 0.917 16 C -0.192 4.192 17 N -0.556 5.556 18 Si 0.786 3.214 19 H -0.182 1.182 20 H -0.208 1.208 21 H -0.210 1.210 22 C 0.002 3.998 23 C -0.134 4.134 24 C 0.051 3.949 25 O -0.314 6.314 26 H 0.107 0.893 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.192 0.808 30 H 0.170 0.830 31 H 0.111 0.889 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.126 0.874 41 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -21.835 6.846 0.377 22.886 hybrid contribution 1.879 -0.966 0.735 2.237 sum -19.957 5.880 1.113 20.835 Atomic orbital electron populations 1.20805 0.87849 1.04253 1.03766 1.20764 0.98626 0.91675 0.97833 1.21314 0.92550 0.98885 0.98905 1.21656 0.95353 0.96547 0.97549 1.19676 0.91021 0.95651 1.06804 1.19109 0.88458 0.80426 0.79420 1.90753 1.71018 1.39914 1.45937 1.48434 1.08227 1.33603 1.42771 1.22452 0.97344 0.93407 0.89720 1.21947 0.95910 1.02081 0.96713 1.21518 0.94735 0.98694 0.99255 1.18921 0.94271 0.93576 0.91472 1.00120 1.21553 0.92485 1.12455 1.30775 0.91695 1.25952 1.03597 0.94657 0.95005 1.70121 1.36695 1.16360 1.32471 0.85463 0.79796 0.78303 0.77849 1.18178 1.20765 1.21002 1.21756 0.76315 1.00696 1.00986 1.21423 0.94641 0.97319 1.00015 1.18132 0.88176 0.86491 1.02062 1.84756 1.75333 1.35925 1.35352 0.89343 0.89149 0.91141 0.80776 0.83008 0.88896 0.87104 0.87345 0.93922 0.91832 0.92976 0.93186 0.90779 0.93688 0.87362 0.73252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 9.78 71.23 0.70 -0.48 16 2 C -0.09 -1.57 5.90 -19.72 -0.12 -1.68 16 3 C -0.10 -1.60 9.67 22.22 0.21 -1.39 16 4 C -0.09 -2.10 7.35 22.53 0.17 -1.94 16 5 C -0.13 -4.22 5.21 -20.10 -0.10 -4.33 16 6 C 0.54 23.76 7.35 86.79 0.64 24.40 16 7 O -0.59 -32.96 16.31 -3.87 -0.06 -33.02 16 8 N -0.60 -25.18 2.97 -822.28 -2.44 -27.62 16 9 C 0.09 2.69 4.84 86.37 0.42 3.11 16 10 C -0.13 -3.95 6.08 30.67 0.19 -3.76 16 11 C -0.10 -4.09 5.11 30.62 0.16 -3.93 16 12 C 0.04 1.91 2.25 -11.46 -0.03 1.89 16 13 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 14 C -0.53 -29.94 8.56 25.60 0.22 -29.72 16 15 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 16 C 0.01 0.40 5.31 84.65 0.45 0.85 16 17 N -0.92 -57.44 11.41 21.45 0.24 -57.19 16 18 Si 0.96 44.99 29.54 68.60 2.03 47.01 16 19 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 21 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 22 C 0.12 6.40 5.41 86.36 0.47 6.87 16 23 C -0.11 -3.63 9.56 22.63 0.22 -3.42 16 24 C 0.10 2.29 6.67 22.47 0.15 2.44 16 25 O -0.50 -10.18 12.53 -92.62 -1.16 -11.34 16 26 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.09 0.63 8.08 -2.39 -0.02 0.61 16 28 H 0.07 0.85 7.52 -2.39 -0.02 0.83 16 29 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 30 H 0.15 2.91 6.33 -2.91 -0.02 2.89 16 31 H 0.09 2.22 8.10 -2.39 -0.02 2.20 16 32 H 0.11 2.66 4.56 -2.39 -0.01 2.65 16 33 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 34 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 38 H 0.07 4.59 5.13 -2.39 -0.01 4.58 16 39 H 0.04 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.11 3.93 8.04 -2.91 -0.02 3.90 16 41 H 0.41 4.42 9.06 -74.06 -0.67 3.75 16 Total: -1.00 -80.58 331.06 2.71 -77.86 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 0.38 Total: 15.38 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: 3.73 Total: -11.09 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -2.20 Total: -84.81 kcal Atomic # 8 Polarization: -43.14 SS G_CDS: -1.22 Total: -44.36 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.01 kcal Total: -80.58 2.71 -77.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397674394.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.211 kcal (2) G-P(sol) polarization free energy of solvation -80.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds