Wall clock time and date at job start Tue Mar 31 2020 06:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38545 * 119.84738 * 2 1 4 4 C 1.38057 * 120.39040 * 179.69917 * 3 2 1 5 5 C 1.38709 * 120.08254 * 0.55183 * 4 3 2 6 6 O 1.35652 * 120.15126 * 179.72555 * 5 4 3 7 7 C 1.40136 * 119.69542 * 359.45122 * 5 4 3 8 8 C 1.47543 * 120.18820 * 180.25065 * 7 5 4 9 9 O 1.21595 * 119.99727 * 53.92375 * 8 7 5 10 10 N 1.34773 * 119.99920 * 233.92040 * 8 7 5 11 11 C 1.46925 * 120.63393 * 5.50946 * 10 8 7 12 12 C 1.53626 * 108.54395 * 126.36097 * 11 10 8 13 13 C 1.53042 * 109.23626 * 54.86228 * 12 11 10 14 14 C 1.53039 * 109.53735 * 298.50819 * 13 12 11 15 15 H 1.08997 * 109.49887 * 301.41179 * 14 13 12 16 16 C 1.50707 * 109.52414 * 181.33783 * 14 13 12 17 17 H 1.07999 * 120.00237 * 0.14147 * 16 14 13 18 18 C 1.37880 * 119.99849 * 180.14801 * 16 14 13 19 19 N 1.31509 * 120.00414 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99665 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46981 * 89.99836 * 20 18 16 22 22 H 1.48495 * 109.46697 * 209.99848 * 20 18 16 23 23 H 1.48508 * 109.47032 * 329.99549 * 20 18 16 24 24 C 1.46925 * 120.62783 * 185.78485 * 10 8 7 25 25 C 1.37782 * 119.85118 * 179.97438 * 2 1 3 26 26 H 1.08991 * 109.47709 * 270.02319 * 1 2 3 27 27 H 1.09007 * 109.46985 * 30.02860 * 1 2 3 28 28 H 1.09006 * 109.46961 * 150.02070 * 1 2 3 29 29 H 1.08003 * 119.80645 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.95600 * 180.30471 * 4 3 2 31 31 H 0.96700 * 113.99997 * 269.72860 * 6 5 4 32 32 H 1.08990 * 109.58836 * 246.20251 * 11 10 8 33 33 H 1.09001 * 109.58288 * 6.62944 * 11 10 8 34 34 H 1.08995 * 109.63909 * 294.87397 * 12 11 10 35 35 H 1.08992 * 109.43089 * 174.72568 * 12 11 10 36 36 H 1.09003 * 109.46113 * 178.48733 * 13 12 11 37 37 H 1.09001 * 109.46150 * 58.52674 * 13 12 11 38 38 H 0.96997 * 120.00189 * 180.02562 * 19 18 16 39 39 H 1.09002 * 109.58786 * 353.37958 * 24 10 8 40 40 H 1.09004 * 109.58262 * 113.65793 * 24 10 8 41 41 H 1.07997 * 120.04466 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.2017 0.0000 4 6 3.5771 1.2148 0.0063 5 6 4.2837 0.0212 0.0010 6 8 5.6402 0.0325 0.0015 7 6 3.5899 -1.1964 0.0010 8 6 4.3306 -2.4724 0.0011 9 8 5.1721 -2.6868 0.8523 10 7 4.0745 -3.4003 -0.9422 11 6 3.1495 -3.1100 -2.0462 12 6 3.8668 -3.3994 -3.3735 13 6 4.3955 -4.8355 -3.3582 14 6 5.4057 -4.9969 -2.2200 15 1 6.2234 -4.2891 -2.3562 16 6 5.9507 -6.4020 -2.2256 17 1 5.6125 -7.1094 -2.9683 18 6 6.8809 -6.7844 -1.2824 19 7 7.2930 -5.9229 -0.3783 20 14 7.5558 -8.5262 -1.2890 21 1 8.7673 -8.5844 -2.1457 22 1 7.9099 -8.9250 0.0969 23 1 6.5265 -9.4539 -1.8233 24 6 4.7103 -4.7235 -0.8827 25 6 2.1928 -1.1950 0.0005 26 1 -0.3634 0.0004 1.0275 27 1 -0.3633 0.8898 -0.5143 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6509 2.1337 -0.0004 30 1 4.1074 2.1556 0.0112 31 1 6.0338 0.0356 -0.8817 32 1 2.2665 -3.7430 -1.9591 33 1 2.8548 -2.0612 -2.0098 34 1 4.6989 -2.7068 -3.4989 35 1 3.1650 -3.2790 -4.1987 36 1 4.8819 -5.0536 -4.3090 37 1 3.5659 -5.5264 -3.2080 38 1 7.9477 -6.1919 0.2850 39 1 5.4457 -4.7397 -0.0783 40 1 3.9523 -5.4852 -0.7002 41 1 1.6512 -2.1293 0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397739158.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:08 Heat of formation + Delta-G solvation = -60.982985 kcal Electronic energy + Delta-G solvation = -23520.096884 eV Core-core repulsion = 20171.607981 eV Total energy + Delta-G solvation = -3348.488903 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.35386 -38.61540 -36.97366 -36.47249 -33.43248 -32.00191 -31.78379 -31.05404 -29.62650 -26.43812 -25.24479 -24.97135 -23.03982 -21.98890 -21.59656 -19.78303 -18.69113 -17.89934 -16.87301 -16.10399 -15.99952 -15.72723 -15.09677 -14.55480 -14.31929 -14.08036 -13.83664 -13.75164 -13.58548 -13.18312 -12.80482 -12.72839 -12.57826 -12.17518 -11.94473 -11.83728 -11.78165 -11.51009 -10.98693 -10.91142 -10.58312 -10.48131 -10.40720 -10.22927 -9.88560 -9.32482 -9.13781 -8.96982 -8.80831 -8.47114 -8.41896 -7.71956 -5.97903 -4.07488 1.01077 1.19544 3.17433 3.31502 3.39163 3.41231 3.56385 3.80562 4.23341 4.43859 4.70343 4.74713 4.84768 5.15098 5.19487 5.31237 5.34553 5.43453 5.45858 5.53090 5.59848 5.67472 5.81843 5.90439 5.98550 6.12577 6.16833 6.30563 6.31235 6.41096 6.59503 6.67157 6.70796 6.85459 6.97512 7.15867 7.30344 7.65070 7.75347 7.87846 8.00855 8.26110 8.39779 8.88485 8.97361 9.58335 11.07097 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024549 B = 0.004512 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.301337 B = 6203.993232 C = 6688.644204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.104 4.104 3 C -0.094 4.094 4 C -0.148 4.148 5 C 0.144 3.856 6 O -0.483 6.483 7 C -0.136 4.136 8 C 0.547 3.453 9 O -0.515 6.515 10 N -0.601 5.601 11 C 0.106 3.894 12 C -0.132 4.132 13 C -0.111 4.111 14 C 0.041 3.959 15 H 0.028 0.972 16 C -0.523 4.523 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.879 5.879 20 Si 0.892 3.108 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.112 3.888 25 C -0.076 4.076 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.067 0.933 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.391 0.609 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.264 0.736 39 H 0.123 0.877 40 H 0.042 0.958 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.215 13.746 -3.085 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.104 4.104 3 C -0.112 4.112 4 C -0.166 4.166 5 C 0.098 3.902 6 O -0.293 6.293 7 C -0.140 4.140 8 C 0.333 3.667 9 O -0.391 6.391 10 N -0.334 5.334 11 C -0.017 4.017 12 C -0.171 4.171 13 C -0.148 4.148 14 C 0.022 3.978 15 H 0.046 0.954 16 C -0.561 4.561 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.516 5.516 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.008 4.008 25 C -0.094 4.094 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.248 0.752 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.141 0.859 40 H 0.061 0.939 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.680 13.610 -1.849 18.693 hybrid contribution 0.485 -0.929 -0.509 1.165 sum -12.196 12.681 -2.358 17.751 Atomic orbital electron populations 1.20766 0.90749 1.02855 1.02415 1.19817 0.96333 0.92734 1.01564 1.20972 0.93457 0.97626 0.99194 1.21351 0.94471 0.97570 1.03241 1.18456 0.83428 0.90781 0.97556 1.84828 1.15133 1.96146 1.33210 1.20608 0.94302 0.94439 1.04617 1.18095 0.82885 0.83107 0.82618 1.90844 1.32052 1.78385 1.37773 1.48465 1.44960 1.15853 1.24151 1.21816 0.92314 1.00303 0.87291 1.22013 0.99700 0.99676 0.95671 1.21631 0.99453 0.93257 1.00495 1.18949 0.92588 0.97166 0.89095 0.95351 1.21072 1.23862 0.96492 1.14700 0.92380 1.25059 0.96195 0.97291 0.95457 1.69888 1.30897 1.34133 1.16690 0.86603 0.79313 0.84875 0.77270 1.20685 1.21180 1.19915 1.22310 0.96364 0.77754 1.04348 1.21073 0.92037 0.98282 0.98053 0.91158 0.91507 0.91362 0.85544 0.85031 0.75197 0.92106 0.90929 0.92282 0.92284 0.93030 0.93176 0.92607 0.85902 0.93936 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.00 36.01 0.36 -0.49 16 2 C -0.10 -1.13 5.87 -104.67 -0.61 -1.74 16 3 C -0.09 -0.96 9.68 -39.53 -0.38 -1.35 16 4 C -0.15 -1.75 9.98 -39.47 -0.39 -2.15 16 5 C 0.14 2.21 6.70 -38.70 -0.26 1.95 16 6 O -0.48 -7.86 12.69 -22.14 -0.28 -8.14 16 7 C -0.14 -2.26 4.62 -104.84 -0.48 -2.75 16 8 C 0.55 11.61 6.83 -12.47 -0.09 11.53 16 9 O -0.51 -13.52 16.17 1.80 0.03 -13.49 16 10 N -0.60 -12.25 2.97 -173.73 -0.52 -12.77 16 11 C 0.11 1.68 5.59 -3.49 -0.02 1.66 16 12 C -0.13 -2.13 6.10 -26.38 -0.16 -2.29 16 13 C -0.11 -2.19 5.11 -26.69 -0.14 -2.32 16 14 C 0.04 1.02 2.25 -91.65 -0.21 0.81 16 15 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 16 C -0.52 -14.18 8.57 -34.44 -0.29 -14.48 16 17 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.88 -25.91 11.39 55.43 0.63 -25.28 16 20 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 24 C 0.11 2.74 5.41 -3.71 -0.02 2.72 16 25 C -0.08 -1.01 7.41 -39.20 -0.29 -1.30 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 28 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 30 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.39 4.68 9.06 45.56 0.41 5.09 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.99 5.37 -51.93 -0.28 0.71 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.12 3.54 5.11 -51.93 -0.27 3.27 16 40 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.13 1.62 7.75 -52.49 -0.41 1.21 16 LS Contribution 334.24 15.07 5.04 5.04 Total: -1.00 -33.73 334.24 -8.35 -42.08 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -5.15 Total: 4.77 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -3.08 Total: -8.54 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.12 Total: -38.05 kcal Atomic # 8 Polarization: -21.38 SS G_CDS: -0.25 Total: -21.63 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.73 -8.35 -42.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397739158.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.901 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds