Wall clock time and date at job start Tue Mar 31 2020 06:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38545 * 119.84738 * 2 1 4 4 C 1.38057 * 120.39040 * 179.69917 * 3 2 1 5 5 C 1.38709 * 120.08254 * 0.55183 * 4 3 2 6 6 O 1.35652 * 120.15126 * 179.72555 * 5 4 3 7 7 C 1.40136 * 119.69542 * 359.45122 * 5 4 3 8 8 C 1.47543 * 120.18820 * 180.25065 * 7 5 4 9 9 O 1.21595 * 119.99727 * 53.92375 * 8 7 5 10 10 N 1.34773 * 119.99920 * 233.92040 * 8 7 5 11 11 C 1.46925 * 120.63393 * 5.50946 * 10 8 7 12 12 C 1.53626 * 108.54395 * 126.36097 * 11 10 8 13 13 C 1.53042 * 109.23626 * 54.86228 * 12 11 10 14 14 C 1.53039 * 109.53735 * 298.50819 * 13 12 11 15 15 H 1.08997 * 109.49887 * 301.41179 * 14 13 12 16 16 C 1.50707 * 109.52414 * 181.33783 * 14 13 12 17 17 H 1.07999 * 120.00237 * 0.14147 * 16 14 13 18 18 C 1.37880 * 119.99849 * 180.14801 * 16 14 13 19 19 N 1.31509 * 120.00414 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 119.99665 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.46981 * 89.99836 * 20 18 16 22 22 H 1.48495 * 109.46697 * 209.99848 * 20 18 16 23 23 H 1.48508 * 109.47032 * 329.99549 * 20 18 16 24 24 C 1.46925 * 120.62783 * 185.78485 * 10 8 7 25 25 C 1.37782 * 119.85118 * 179.97438 * 2 1 3 26 26 H 1.08991 * 109.47709 * 270.02319 * 1 2 3 27 27 H 1.09007 * 109.46985 * 30.02860 * 1 2 3 28 28 H 1.09006 * 109.46961 * 150.02070 * 1 2 3 29 29 H 1.08003 * 119.80645 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.95600 * 180.30471 * 4 3 2 31 31 H 0.96700 * 113.99997 * 269.72860 * 6 5 4 32 32 H 1.08990 * 109.58836 * 246.20251 * 11 10 8 33 33 H 1.09001 * 109.58288 * 6.62944 * 11 10 8 34 34 H 1.08995 * 109.63909 * 294.87397 * 12 11 10 35 35 H 1.08992 * 109.43089 * 174.72568 * 12 11 10 36 36 H 1.09003 * 109.46113 * 178.48733 * 13 12 11 37 37 H 1.09001 * 109.46150 * 58.52674 * 13 12 11 38 38 H 0.96997 * 120.00189 * 180.02562 * 19 18 16 39 39 H 1.09002 * 109.58786 * 353.37958 * 24 10 8 40 40 H 1.09004 * 109.58262 * 113.65793 * 24 10 8 41 41 H 1.07997 * 120.04466 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.2017 0.0000 4 6 3.5771 1.2148 0.0063 5 6 4.2837 0.0212 0.0010 6 8 5.6402 0.0325 0.0015 7 6 3.5899 -1.1964 0.0010 8 6 4.3306 -2.4724 0.0011 9 8 5.1721 -2.6868 0.8523 10 7 4.0745 -3.4003 -0.9422 11 6 3.1495 -3.1100 -2.0462 12 6 3.8668 -3.3994 -3.3735 13 6 4.3955 -4.8355 -3.3582 14 6 5.4057 -4.9969 -2.2200 15 1 6.2234 -4.2891 -2.3562 16 6 5.9507 -6.4020 -2.2256 17 1 5.6125 -7.1094 -2.9683 18 6 6.8809 -6.7844 -1.2824 19 7 7.2930 -5.9229 -0.3783 20 14 7.5558 -8.5262 -1.2890 21 1 8.7673 -8.5844 -2.1457 22 1 7.9099 -8.9250 0.0969 23 1 6.5265 -9.4539 -1.8233 24 6 4.7103 -4.7235 -0.8827 25 6 2.1928 -1.1950 0.0005 26 1 -0.3634 0.0004 1.0275 27 1 -0.3633 0.8898 -0.5143 28 1 -0.3633 -0.8902 -0.5135 29 1 1.6509 2.1337 -0.0004 30 1 4.1074 2.1556 0.0112 31 1 6.0338 0.0356 -0.8817 32 1 2.2665 -3.7430 -1.9591 33 1 2.8548 -2.0612 -2.0098 34 1 4.6989 -2.7068 -3.4989 35 1 3.1650 -3.2790 -4.1987 36 1 4.8819 -5.0536 -4.3090 37 1 3.5659 -5.5264 -3.2080 38 1 7.9477 -6.1919 0.2850 39 1 5.4457 -4.7397 -0.0783 40 1 3.9523 -5.4852 -0.7002 41 1 1.6512 -2.1293 0.0005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397739158.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:08 Heat of formation + Delta-G solvation = -84.217537 kcal Electronic energy + Delta-G solvation = -23521.104410 eV Core-core repulsion = 20171.607981 eV Total energy + Delta-G solvation = -3349.496429 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.65180 -40.00685 -38.29258 -37.94186 -35.34344 -33.63163 -32.74363 -32.28255 -31.33894 -27.28732 -27.14561 -26.52509 -24.26310 -23.54765 -22.76853 -21.36728 -20.10531 -19.17665 -18.56601 -17.89194 -17.21172 -16.98871 -16.59854 -16.35954 -15.63943 -15.38266 -15.21600 -14.81868 -14.73608 -14.53799 -14.40452 -14.24124 -13.84409 -13.54134 -13.48805 -12.90328 -12.87394 -12.73103 -12.57078 -12.39151 -12.29688 -12.23290 -11.86976 -11.68750 -11.65139 -11.15014 -10.97198 -10.68723 -10.53883 -9.95094 -9.49487 -9.38674 -8.11883 -6.30221 -0.04220 0.24682 1.39243 1.40334 1.51354 1.71203 2.16267 2.41205 2.59706 3.15953 3.20780 3.52714 3.87521 3.97495 4.03997 4.13309 4.26660 4.34874 4.35835 4.55508 4.61372 4.71985 4.77491 4.79531 4.82367 4.94686 4.96581 5.06475 5.18397 5.22540 5.24149 5.29277 5.32203 5.37509 5.52811 5.55919 5.62231 5.84683 5.87191 5.97651 6.30690 6.60249 6.72296 6.83379 7.26695 7.40738 8.91260 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024549 B = 0.004512 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.301337 B = 6203.993232 C = 6688.644204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.094 4.094 3 C -0.078 4.078 4 C -0.142 4.142 5 C 0.118 3.882 6 O -0.510 6.510 7 C -0.165 4.165 8 C 0.542 3.458 9 O -0.585 6.585 10 N -0.602 5.602 11 C 0.104 3.896 12 C -0.125 4.125 13 C -0.105 4.105 14 C 0.040 3.960 15 H -0.017 1.017 16 C -0.536 4.536 17 H 0.064 0.936 18 C 0.008 3.992 19 N -0.917 5.917 20 Si 0.959 3.041 21 H -0.275 1.275 22 H -0.289 1.289 23 H -0.259 1.259 24 C 0.124 3.876 25 C -0.079 4.079 26 H 0.078 0.922 27 H 0.090 0.910 28 H 0.075 0.925 29 H 0.169 0.831 30 H 0.155 0.845 31 H 0.402 0.598 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.106 0.894 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.259 0.741 39 H 0.074 0.926 40 H 0.040 0.960 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.820 15.410 -4.763 23.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.094 4.094 3 C -0.095 4.095 4 C -0.161 4.161 5 C 0.073 3.927 6 O -0.322 6.322 7 C -0.168 4.168 8 C 0.331 3.669 9 O -0.465 6.465 10 N -0.333 5.333 11 C -0.018 4.018 12 C -0.163 4.163 13 C -0.142 4.142 14 C 0.021 3.979 15 H 0.002 0.998 16 C -0.575 4.575 17 H 0.083 0.917 18 C -0.191 4.191 19 N -0.555 5.555 20 Si 0.784 3.216 21 H -0.200 1.200 22 H -0.215 1.215 23 H -0.183 1.183 24 C 0.002 3.998 25 C -0.098 4.098 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.187 0.813 30 H 0.173 0.827 31 H 0.260 0.740 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.066 0.934 35 H 0.124 0.876 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.092 0.908 40 H 0.058 0.942 41 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -16.333 15.283 -3.589 22.654 hybrid contribution 1.544 -1.360 -0.004 2.057 sum -14.790 13.922 -3.593 20.627 Atomic orbital electron populations 1.20861 0.87895 1.04500 1.03419 1.20216 0.98199 0.91726 0.99283 1.21493 0.92728 0.99164 0.96151 1.21601 0.95394 0.96887 1.02176 1.18824 0.83009 0.91742 0.99129 1.84787 1.16516 1.96306 1.34600 1.20331 0.95532 0.92113 1.08862 1.18909 0.82113 0.84490 0.81363 1.90789 1.35370 1.79984 1.40399 1.48473 1.45137 1.14276 1.25426 1.22158 0.91806 1.02603 0.85214 1.21985 1.00356 0.96541 0.97420 1.21518 0.98294 0.96306 0.98106 1.18883 0.92735 0.94941 0.91377 0.99842 1.21533 1.23748 0.97761 1.14425 0.91735 1.25937 0.96712 1.01365 0.95078 1.70112 1.31580 1.36307 1.17542 0.85539 0.78939 0.80063 0.77046 1.20043 1.21500 1.18336 1.21743 0.95380 0.80134 1.02578 1.21183 0.90413 0.99949 0.98244 0.90320 0.89072 0.90640 0.81336 0.82741 0.73999 0.89751 0.88145 0.93391 0.87582 0.92791 0.92167 0.93216 0.90811 0.94188 0.84669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.00 71.24 0.71 -0.40 16 2 C -0.09 -1.64 5.87 -19.90 -0.12 -1.76 16 3 C -0.08 -1.22 9.68 22.30 0.22 -1.00 16 4 C -0.14 -2.99 9.98 22.34 0.22 -2.77 16 5 C 0.12 3.64 6.70 22.84 0.15 3.79 16 6 O -0.51 -17.55 12.69 -86.35 -1.10 -18.64 16 7 C -0.16 -5.53 4.62 -20.01 -0.09 -5.62 16 8 C 0.54 24.40 6.83 86.70 0.59 24.99 16 9 O -0.58 -33.50 16.17 -0.69 -0.01 -33.51 16 10 N -0.60 -25.44 2.97 -821.82 -2.44 -27.87 16 11 C 0.10 3.09 5.59 86.51 0.48 3.58 16 12 C -0.13 -3.76 6.10 30.82 0.19 -3.58 16 13 C -0.10 -4.07 5.11 30.62 0.16 -3.91 16 14 C 0.04 2.06 2.25 -11.46 -0.03 2.03 16 15 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 16 C -0.54 -30.03 8.57 25.60 0.22 -29.81 16 17 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 18 C 0.01 0.48 5.30 84.66 0.45 0.93 16 19 N -0.92 -57.60 11.39 21.45 0.24 -57.36 16 20 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 21 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 23 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 24 C 0.12 6.42 5.41 86.36 0.47 6.89 16 25 C -0.08 -1.96 7.41 22.52 0.17 -1.79 16 26 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.09 0.53 8.08 -2.38 -0.02 0.51 16 28 H 0.07 0.70 8.08 -2.38 -0.02 0.68 16 29 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 30 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.40 10.52 9.06 -74.06 -0.67 9.85 16 32 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.10 2.49 5.37 -2.39 -0.01 2.48 16 34 H 0.05 1.55 8.14 -2.39 -0.02 1.54 16 35 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.06 2.21 8.14 -2.39 -0.02 2.20 16 38 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 39 H 0.07 4.62 5.11 -2.39 -0.01 4.61 16 40 H 0.04 2.03 8.14 -2.38 -0.02 2.01 16 41 H 0.14 3.10 7.75 -2.91 -0.02 3.08 16 Total: -1.00 -81.92 334.24 2.89 -79.04 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.37 Total: 19.70 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 3.79 Total: -8.43 kcal Atomic # 7 Polarization: -83.04 SS G_CDS: -2.19 Total: -85.23 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -1.11 Total: -52.15 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -81.92 2.89 -79.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397739158.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.182 kcal (2) G-P(sol) polarization free energy of solvation -81.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds