Wall clock time and date at job start Tue Mar 31 2020 06:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38546 * 119.84863 * 2 1 4 4 C 1.38055 * 120.39073 * 179.97438 * 3 2 1 5 5 C 1.38708 * 120.08530 * 0.02562 * 4 3 2 6 6 O 1.35650 * 120.15301 * 179.97438 * 5 4 3 7 7 C 1.40142 * 119.70004 * 359.97438 * 5 4 3 8 8 C 1.47529 * 120.19291 * 179.97438 * 7 5 4 9 9 O 1.21590 * 120.00087 * 305.93450 * 8 7 5 10 10 N 1.34776 * 119.99828 * 126.21040 * 8 7 5 11 11 C 1.46922 * 120.63389 * 3.87450 * 10 8 7 12 12 C 1.53195 * 108.77771 * 233.58758 * 11 10 8 13 13 C 1.53042 * 109.31070 * 305.36708 * 12 11 10 14 14 C 1.53038 * 109.54165 * 61.36270 * 13 12 11 15 15 H 1.09001 * 109.49792 * 58.61896 * 14 13 12 16 16 C 1.50704 * 109.49752 * 178.68463 * 14 13 12 17 17 H 1.07997 * 119.99510 * 0.02562 * 16 14 13 18 18 C 1.37876 * 119.99764 * 179.97438 * 16 14 13 19 19 N 1.31513 * 120.00384 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99733 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46908 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47139 * 120.00142 * 20 18 16 23 23 H 1.48502 * 109.46885 * 240.00067 * 20 18 16 24 24 C 1.46932 * 120.62780 * 183.59466 * 10 8 7 25 25 C 1.37790 * 119.84981 * 180.25458 * 2 1 3 26 26 H 1.08998 * 109.46795 * 90.00777 * 1 2 3 27 27 H 1.09007 * 109.46730 * 209.99716 * 1 2 3 28 28 H 1.08989 * 109.47409 * 330.00179 * 1 2 3 29 29 H 1.08002 * 119.80618 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.95787 * 179.97438 * 4 3 2 31 31 H 0.96705 * 113.99803 * 270.02211 * 6 5 4 32 32 H 1.09000 * 109.58782 * 353.37150 * 11 10 8 33 33 H 1.08998 * 109.59056 * 113.65612 * 11 10 8 34 34 H 1.09004 * 109.49542 * 65.31364 * 12 11 10 35 35 H 1.08994 * 109.50045 * 185.41204 * 12 11 10 36 36 H 1.09000 * 109.46031 * 181.38785 * 13 12 11 37 37 H 1.08999 * 109.45681 * 301.35431 * 13 12 11 38 38 H 0.96990 * 120.00235 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.58685 * 246.19987 * 24 10 8 40 40 H 1.08993 * 109.58860 * 6.62945 * 24 10 8 41 41 H 1.07995 * 120.04844 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.2017 0.0000 4 6 3.5771 1.2147 0.0005 5 6 4.2837 0.0212 0.0005 6 8 5.6402 0.0324 0.0005 7 6 3.5900 -1.1965 0.0005 8 6 4.3306 -2.4724 0.0000 9 8 5.1699 -2.6878 -0.8530 10 7 4.0729 -3.4016 0.9416 11 6 2.9998 -3.1947 1.9236 12 6 3.5792 -3.3679 3.3311 13 6 4.2681 -4.7309 3.4306 14 6 5.4182 -4.7979 2.4232 15 1 6.1271 -3.9952 2.6264 16 6 6.1162 -6.1281 2.5444 17 1 5.7737 -6.8536 3.2673 18 6 7.1912 -6.4190 1.7317 19 7 7.6079 -5.5356 0.8510 20 14 8.0559 -8.0681 1.8814 21 1 7.3982 -8.8776 2.9384 22 1 7.9760 -8.7884 0.5853 23 1 9.4805 -7.8493 2.2392 24 6 4.8559 -4.6434 1.0019 25 6 2.1928 -1.1951 -0.0053 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5137 29 1 1.6509 2.1337 -0.0004 30 1 4.1075 2.1555 0.0001 31 1 6.0335 0.0360 -0.8829 32 1 2.5953 -2.1882 1.8163 33 1 2.2083 -3.9259 1.7594 34 1 4.3051 -2.5783 3.5254 35 1 2.7752 -3.3122 4.0649 36 1 4.6599 -4.8670 4.4386 37 1 3.5475 -5.5188 3.2117 38 1 8.3640 -5.7405 0.2790 39 1 4.2139 -5.4920 0.7658 40 1 5.6765 -4.5931 0.2864 41 1 1.6512 -2.1294 -0.0099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397739161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:14 Heat of formation + Delta-G solvation = -60.911715 kcal Electronic energy + Delta-G solvation = -23542.231299 eV Core-core repulsion = 20193.745487 eV Total energy + Delta-G solvation = -3348.485812 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37236 -38.59666 -36.98119 -36.44827 -33.43039 -31.99558 -31.76789 -31.08686 -29.58448 -26.44439 -25.22786 -24.98083 -23.01753 -22.02359 -21.55202 -19.78939 -18.62918 -17.87559 -16.92737 -16.10487 -16.01737 -15.48395 -15.26411 -14.59100 -14.32856 -14.07338 -13.93449 -13.60643 -13.56453 -13.27037 -12.75281 -12.72711 -12.55911 -12.19518 -11.86457 -11.81877 -11.70646 -11.58723 -10.98859 -10.87209 -10.56447 -10.45429 -10.36556 -10.21113 -9.87007 -9.36336 -9.12605 -8.94895 -8.78594 -8.45725 -8.41206 -7.71757 -5.97312 -4.06123 1.01308 1.19487 3.18146 3.31435 3.39762 3.42916 3.51473 3.85665 4.30135 4.44835 4.69855 4.73084 4.84221 5.14857 5.19902 5.32575 5.37676 5.43540 5.47835 5.56126 5.60412 5.71954 5.81983 5.91375 6.01551 6.12195 6.21784 6.32766 6.34505 6.40679 6.63098 6.69839 6.72018 6.88364 7.00298 7.17561 7.29742 7.66353 7.79594 7.89776 8.02190 8.26402 8.40905 8.85383 8.98700 9.59433 11.08148 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024591 B = 0.004592 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.375936 B = 6095.851276 C = 6692.240965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.105 4.105 3 C -0.093 4.093 4 C -0.148 4.148 5 C 0.147 3.853 6 O -0.488 6.488 7 C -0.137 4.137 8 C 0.556 3.444 9 O -0.533 6.533 10 N -0.596 5.596 11 C 0.101 3.899 12 C -0.133 4.133 13 C -0.110 4.110 14 C 0.040 3.960 15 H 0.030 0.970 16 C -0.520 4.520 17 H 0.059 0.941 18 C 0.062 3.938 19 N -0.880 5.880 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.113 3.887 25 C -0.078 4.078 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.398 0.602 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.263 0.737 39 H 0.043 0.957 40 H 0.122 0.878 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.047 12.828 -1.288 19.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.106 4.106 3 C -0.112 4.112 4 C -0.167 4.167 5 C 0.101 3.899 6 O -0.300 6.300 7 C -0.141 4.141 8 C 0.342 3.658 9 O -0.411 6.411 10 N -0.328 5.328 11 C -0.022 4.022 12 C -0.172 4.172 13 C -0.148 4.148 14 C 0.021 3.979 15 H 0.048 0.952 16 C -0.559 4.559 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.517 5.517 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.006 4.006 25 C -0.096 4.096 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.145 0.855 30 H 0.150 0.850 31 H 0.256 0.744 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.140 0.860 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.502 12.697 -1.275 18.579 hybrid contribution 0.616 -0.861 -0.364 1.120 sum -12.887 11.836 -1.639 17.574 Atomic orbital electron populations 1.20763 0.90742 1.02900 1.02372 1.19812 0.96329 0.92726 1.01683 1.20972 0.93460 0.97624 0.99107 1.21355 0.94466 0.97582 1.03274 1.18427 0.83553 0.90692 0.97214 1.84719 1.15126 1.96117 1.33995 1.20609 0.94318 0.94444 1.04746 1.18006 0.82682 0.82893 0.82180 1.90778 1.33936 1.79041 1.37321 1.48426 1.34626 1.20501 1.29244 1.21856 0.89876 1.01069 0.89402 1.21941 0.99883 1.00093 0.95251 1.21629 0.98682 0.94001 1.00491 1.19053 0.91900 0.97617 0.89363 0.95211 1.21121 1.13886 1.00751 1.20147 0.92298 1.25060 0.96854 0.96893 0.95232 1.69903 1.26138 1.34046 1.21661 0.86540 0.79517 0.84086 0.77892 1.19788 1.20988 1.21005 1.22406 0.94635 0.80319 1.03282 1.21095 0.92088 0.98300 0.98156 0.91191 0.91353 0.91482 0.85536 0.85007 0.74417 0.90518 0.92032 0.92132 0.92255 0.93004 0.93199 0.92721 0.93886 0.85969 0.85130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.00 36.01 0.36 -0.48 16 2 C -0.11 -1.14 5.87 -104.67 -0.61 -1.75 16 3 C -0.09 -0.96 9.68 -39.53 -0.38 -1.34 16 4 C -0.15 -1.78 9.98 -39.47 -0.39 -2.18 16 5 C 0.15 2.30 6.70 -38.69 -0.26 2.04 16 6 O -0.49 -8.13 12.70 -21.93 -0.28 -8.41 16 7 C -0.14 -2.31 4.89 -104.84 -0.51 -2.82 16 8 C 0.56 11.87 6.86 -12.47 -0.09 11.78 16 9 O -0.53 -13.40 16.18 2.01 0.03 -13.36 16 10 N -0.60 -12.56 2.97 -173.73 -0.52 -13.07 16 11 C 0.10 1.68 5.52 -3.71 -0.02 1.66 16 12 C -0.13 -2.29 6.08 -26.61 -0.16 -2.45 16 13 C -0.11 -2.26 5.10 -26.69 -0.14 -2.40 16 14 C 0.04 1.01 2.26 -91.42 -0.21 0.80 16 15 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 16 C -0.52 -14.32 8.56 -34.44 -0.29 -14.61 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.88 -26.07 11.41 55.43 0.63 -25.44 16 20 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C 0.11 2.82 5.42 -3.48 -0.02 2.81 16 25 C -0.08 -1.03 7.07 -39.19 -0.28 -1.31 16 26 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 28 H 0.07 0.41 8.08 -51.94 -0.42 -0.01 16 29 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 31 H 0.40 5.22 9.06 45.56 0.41 5.63 16 32 H 0.08 1.12 4.74 -51.93 -0.25 0.87 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.12 3.54 5.17 -51.93 -0.27 3.27 16 41 H 0.13 1.59 7.37 -52.49 -0.39 1.21 16 LS Contribution 333.22 15.07 5.02 5.02 Total: -1.00 -33.34 333.22 -8.32 -41.66 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -5.10 Total: 5.74 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -3.10 Total: -8.59 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.12 Total: -38.51 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.25 Total: -21.77 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.34 -8.32 -41.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397739161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.250 kcal (2) G-P(sol) polarization free energy of solvation -33.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds