Wall clock time and date at job start Tue Mar 31 2020 06:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38546 * 119.84863 * 2 1 4 4 C 1.38055 * 120.39073 * 179.97438 * 3 2 1 5 5 C 1.38708 * 120.08530 * 0.02562 * 4 3 2 6 6 O 1.35650 * 120.15301 * 179.97438 * 5 4 3 7 7 C 1.40142 * 119.70004 * 359.97438 * 5 4 3 8 8 C 1.47529 * 120.19291 * 179.97438 * 7 5 4 9 9 O 1.21590 * 120.00087 * 305.93450 * 8 7 5 10 10 N 1.34776 * 119.99828 * 126.21040 * 8 7 5 11 11 C 1.46922 * 120.63389 * 3.87450 * 10 8 7 12 12 C 1.53195 * 108.77771 * 233.58758 * 11 10 8 13 13 C 1.53042 * 109.31070 * 305.36708 * 12 11 10 14 14 C 1.53038 * 109.54165 * 61.36270 * 13 12 11 15 15 H 1.09001 * 109.49792 * 58.61896 * 14 13 12 16 16 C 1.50704 * 109.49752 * 178.68463 * 14 13 12 17 17 H 1.07997 * 119.99510 * 0.02562 * 16 14 13 18 18 C 1.37876 * 119.99764 * 179.97438 * 16 14 13 19 19 N 1.31513 * 120.00384 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 119.99733 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46908 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47139 * 120.00142 * 20 18 16 23 23 H 1.48502 * 109.46885 * 240.00067 * 20 18 16 24 24 C 1.46932 * 120.62780 * 183.59466 * 10 8 7 25 25 C 1.37790 * 119.84981 * 180.25458 * 2 1 3 26 26 H 1.08998 * 109.46795 * 90.00777 * 1 2 3 27 27 H 1.09007 * 109.46730 * 209.99716 * 1 2 3 28 28 H 1.08989 * 109.47409 * 330.00179 * 1 2 3 29 29 H 1.08002 * 119.80618 * 359.97438 * 3 2 1 30 30 H 1.08000 * 119.95787 * 179.97438 * 4 3 2 31 31 H 0.96705 * 113.99803 * 270.02211 * 6 5 4 32 32 H 1.09000 * 109.58782 * 353.37150 * 11 10 8 33 33 H 1.08998 * 109.59056 * 113.65612 * 11 10 8 34 34 H 1.09004 * 109.49542 * 65.31364 * 12 11 10 35 35 H 1.08994 * 109.50045 * 185.41204 * 12 11 10 36 36 H 1.09000 * 109.46031 * 181.38785 * 13 12 11 37 37 H 1.08999 * 109.45681 * 301.35431 * 13 12 11 38 38 H 0.96990 * 120.00235 * 180.02562 * 19 18 16 39 39 H 1.08997 * 109.58685 * 246.19987 * 24 10 8 40 40 H 1.08993 * 109.58860 * 6.62945 * 24 10 8 41 41 H 1.07995 * 120.04844 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.2017 0.0000 4 6 3.5771 1.2147 0.0005 5 6 4.2837 0.0212 0.0005 6 8 5.6402 0.0324 0.0005 7 6 3.5900 -1.1965 0.0005 8 6 4.3306 -2.4724 0.0000 9 8 5.1699 -2.6878 -0.8530 10 7 4.0729 -3.4016 0.9416 11 6 2.9998 -3.1947 1.9236 12 6 3.5792 -3.3679 3.3311 13 6 4.2681 -4.7309 3.4306 14 6 5.4182 -4.7979 2.4232 15 1 6.1271 -3.9952 2.6264 16 6 6.1162 -6.1281 2.5444 17 1 5.7737 -6.8536 3.2673 18 6 7.1912 -6.4190 1.7317 19 7 7.6079 -5.5356 0.8510 20 14 8.0559 -8.0681 1.8814 21 1 7.3982 -8.8776 2.9384 22 1 7.9760 -8.7884 0.5853 23 1 9.4805 -7.8493 2.2392 24 6 4.8559 -4.6434 1.0019 25 6 2.1928 -1.1951 -0.0053 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5137 29 1 1.6509 2.1337 -0.0004 30 1 4.1075 2.1555 0.0001 31 1 6.0335 0.0360 -0.8829 32 1 2.5953 -2.1882 1.8163 33 1 2.2083 -3.9259 1.7594 34 1 4.3051 -2.5783 3.5254 35 1 2.7752 -3.3122 4.0649 36 1 4.6599 -4.8670 4.4386 37 1 3.5475 -5.5188 3.2117 38 1 8.3640 -5.7405 0.2790 39 1 4.2139 -5.4920 0.7658 40 1 5.6765 -4.5931 0.2864 41 1 1.6512 -2.1294 -0.0099 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397739161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:11 Heat of formation + Delta-G solvation = -83.695545 kcal Electronic energy + Delta-G solvation = -23543.219280 eV Core-core repulsion = 20193.745487 eV Total energy + Delta-G solvation = -3349.473793 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.68230 -40.00149 -38.33554 -37.91500 -35.35629 -33.64302 -32.74337 -32.35196 -31.32315 -27.29483 -27.16158 -26.54976 -24.25682 -23.60103 -22.77588 -21.39253 -20.11152 -19.13822 -18.61657 -17.94751 -17.23805 -16.81935 -16.61000 -16.49779 -15.68091 -15.39956 -15.31578 -14.81828 -14.76211 -14.54404 -14.36829 -14.27888 -13.80595 -13.53051 -13.52625 -12.93059 -12.82093 -12.76131 -12.50492 -12.44974 -12.32023 -12.22816 -11.86688 -11.70744 -11.67110 -11.17073 -10.99101 -10.70004 -10.55711 -9.94167 -9.50122 -9.39587 -8.13009 -6.30944 -0.04987 0.23483 1.38662 1.39674 1.52502 1.68669 2.16093 2.40755 2.60255 3.15092 3.24225 3.49156 3.86559 3.96903 4.02159 4.11329 4.25562 4.33623 4.35225 4.53243 4.60380 4.70682 4.74959 4.78976 4.80898 4.95357 4.95907 5.03768 5.17308 5.20740 5.22387 5.28403 5.32462 5.35916 5.51841 5.55016 5.59685 5.83659 5.85586 5.95418 6.29175 6.58497 6.69346 6.82236 7.21851 7.39751 8.91138 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024591 B = 0.004592 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.375936 B = 6095.851276 C = 6692.240965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.094 4.094 3 C -0.078 4.078 4 C -0.143 4.143 5 C 0.117 3.883 6 O -0.514 6.514 7 C -0.166 4.166 8 C 0.547 3.453 9 O -0.590 6.590 10 N -0.602 5.602 11 C 0.098 3.902 12 C -0.126 4.126 13 C -0.104 4.104 14 C 0.039 3.961 15 H -0.020 1.020 16 C -0.535 4.535 17 H 0.065 0.935 18 C 0.008 3.992 19 N -0.918 5.918 20 Si 0.961 3.039 21 H -0.258 1.258 22 H -0.282 1.282 23 H -0.283 1.283 24 C 0.126 3.874 25 C -0.081 4.081 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.169 0.831 30 H 0.154 0.846 31 H 0.404 0.596 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.041 0.959 35 H 0.107 0.893 36 H 0.053 0.947 37 H 0.062 0.938 38 H 0.259 0.741 39 H 0.041 0.959 40 H 0.075 0.925 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.800 14.146 -0.090 22.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.094 4.094 3 C -0.095 4.095 4 C -0.161 4.161 5 C 0.072 3.928 6 O -0.327 6.327 7 C -0.170 4.170 8 C 0.336 3.664 9 O -0.472 6.472 10 N -0.332 5.332 11 C -0.023 4.023 12 C -0.164 4.164 13 C -0.142 4.142 14 C 0.019 3.981 15 H -0.001 1.001 16 C -0.574 4.574 17 H 0.083 0.917 18 C -0.191 4.191 19 N -0.557 5.557 20 Si 0.786 3.214 21 H -0.182 1.182 22 H -0.208 1.208 23 H -0.209 1.209 24 C 0.004 3.996 25 C -0.099 4.099 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.187 0.813 30 H 0.172 0.828 31 H 0.263 0.737 32 H 0.121 0.879 33 H 0.106 0.894 34 H 0.060 0.940 35 H 0.125 0.875 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -17.304 14.025 -0.037 22.274 hybrid contribution 1.722 -1.177 -0.750 2.217 sum -15.582 12.848 -0.787 20.211 Atomic orbital electron populations 1.20866 0.87763 1.04477 1.03570 1.20233 0.98268 0.91690 0.99202 1.21499 0.92673 0.99247 0.96129 1.21600 0.95446 0.96839 1.02191 1.18819 0.83088 0.91777 0.99117 1.84676 1.16645 1.96303 1.35043 1.20354 0.95687 0.92095 1.08853 1.18853 0.82182 0.84258 0.81106 1.90722 1.36626 1.80317 1.39496 1.48459 1.35188 1.19272 1.30312 1.22196 0.88929 1.03500 0.87721 1.21913 1.00592 0.97058 0.96879 1.21517 0.97208 0.96744 0.98714 1.18979 0.92842 0.95030 0.91218 1.00143 1.21552 1.14202 1.01686 1.19934 0.91678 1.25953 0.97805 1.00582 0.94810 1.70117 1.26571 1.36293 1.22675 0.85453 0.78161 0.79589 0.78151 1.18185 1.20759 1.20870 1.21833 0.93800 0.82294 1.01716 1.21229 0.90367 1.00102 0.98240 0.90026 0.90583 0.89227 0.81309 0.82795 0.73687 0.87914 0.89377 0.94032 0.87468 0.92839 0.91905 0.93143 0.94024 0.90703 0.84238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.00 71.24 0.71 -0.36 16 2 C -0.09 -1.63 5.87 -19.90 -0.12 -1.74 16 3 C -0.08 -1.24 9.68 22.30 0.22 -1.03 16 4 C -0.14 -3.08 9.98 22.34 0.22 -2.86 16 5 C 0.12 3.70 6.70 22.84 0.15 3.85 16 6 O -0.51 -18.30 12.70 -86.52 -1.10 -19.40 16 7 C -0.17 -5.65 4.89 -20.01 -0.10 -5.75 16 8 C 0.55 24.72 6.86 86.69 0.59 25.31 16 9 O -0.59 -32.32 16.18 -0.87 -0.01 -32.34 16 10 N -0.60 -26.28 2.97 -821.82 -2.44 -28.72 16 11 C 0.10 3.10 5.52 86.36 0.48 3.58 16 12 C -0.13 -4.11 6.08 30.67 0.19 -3.92 16 13 C -0.10 -4.22 5.10 30.62 0.16 -4.06 16 14 C 0.04 2.05 2.26 -11.31 -0.03 2.02 16 15 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 16 C -0.54 -30.40 8.56 25.60 0.22 -30.18 16 17 H 0.07 3.53 7.74 -2.91 -0.02 3.50 16 18 C 0.01 0.44 5.30 84.65 0.45 0.89 16 19 N -0.92 -57.81 11.41 21.45 0.24 -57.56 16 20 Si 0.96 45.30 29.54 68.60 2.03 47.32 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 22 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 23 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 24 C 0.13 6.63 5.42 86.51 0.47 7.09 16 25 C -0.08 -1.98 7.07 22.52 0.16 -1.82 16 26 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.08 0.67 8.08 -2.38 -0.02 0.66 16 28 H 0.09 0.53 8.08 -2.39 -0.02 0.51 16 29 H 0.17 1.35 8.06 -2.91 -0.02 1.33 16 30 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 31 H 0.40 11.91 9.06 -74.05 -0.67 11.24 16 32 H 0.10 2.75 4.74 -2.39 -0.01 2.74 16 33 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 34 H 0.04 1.50 8.14 -2.38 -0.02 1.49 16 35 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.05 2.11 8.14 -2.39 -0.02 2.10 16 37 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.26 15.67 8.31 -92.72 -0.77 14.90 16 39 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.07 4.71 5.17 -2.39 -0.01 4.70 16 41 H 0.14 3.07 7.37 -2.91 -0.02 3.05 16 Total: -1.00 -80.59 333.22 2.86 -77.73 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.37 Total: 21.94 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 3.77 Total: -8.98 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -2.19 Total: -86.28 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -1.11 Total: -51.74 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -80.59 2.86 -77.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397739161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.967 kcal (2) G-P(sol) polarization free energy of solvation -80.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.90 seconds