Wall clock time and date at job start Tue Mar 31 2020 06:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38544 * 119.80664 * 2 1 4 4 C 1.37791 * 120.29999 * 179.69850 * 3 2 1 5 5 C 1.39703 * 119.90848 * 0.02562 * 4 3 2 6 6 C 1.47530 * 120.19231 * 180.02562 * 5 4 3 7 7 O 1.21590 * 120.00251 * 233.90100 * 6 5 4 8 8 N 1.34781 * 120.00256 * 53.89771 * 6 5 4 9 9 C 1.46931 * 120.62757 * 5.50435 * 8 6 5 10 10 C 1.53624 * 108.54011 * 126.36869 * 9 8 6 11 11 C 1.53044 * 109.23872 * 54.85818 * 10 9 8 12 12 C 1.53038 * 109.53930 * 298.50898 * 11 10 9 13 13 H 1.09000 * 109.49589 * 301.41324 * 12 11 10 14 14 C 1.50708 * 109.49692 * 181.31823 * 12 11 10 15 15 H 1.07998 * 119.99599 * 0.16025 * 14 12 11 16 16 C 1.37874 * 119.99692 * 180.16504 * 14 12 11 17 17 N 1.31516 * 120.00150 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 119.99822 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47141 * 59.99423 * 18 16 14 20 20 H 1.48496 * 109.46893 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46847 * 299.99524 * 18 16 14 22 22 C 1.46925 * 120.63429 * 185.78845 * 8 6 5 23 23 C 1.40134 * 119.61595 * 359.97438 * 5 4 3 24 24 O 1.35655 * 120.15112 * 179.97438 * 23 5 4 25 25 C 1.38058 * 119.79978 * 179.72430 * 2 1 3 26 26 H 1.08999 * 109.46891 * 89.99662 * 1 2 3 27 27 H 1.08994 * 109.47423 * 210.00295 * 1 2 3 28 28 H 1.09001 * 109.46938 * 330.00233 * 1 2 3 29 29 H 1.07998 * 119.84951 * 359.72313 * 3 2 1 30 30 H 1.08004 * 120.04506 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.58956 * 246.20474 * 9 8 6 32 32 H 1.09002 * 109.58351 * 6.63395 * 9 8 6 33 33 H 1.08998 * 109.63959 * 294.87032 * 10 9 8 34 34 H 1.08999 * 109.46092 * 174.74032 * 10 9 8 35 35 H 1.09006 * 109.45745 * 178.48675 * 11 10 9 36 36 H 1.08995 * 109.44875 * 58.52486 * 11 10 9 37 37 H 0.97009 * 119.99908 * 180.02562 * 17 16 14 38 38 H 1.09006 * 109.58541 * 353.37304 * 22 8 6 39 39 H 1.09008 * 109.58661 * 113.79320 * 22 8 6 40 40 H 0.96701 * 114.00197 * 89.99725 * 24 23 5 41 41 H 1.07997 * 119.96203 * 0.25411 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2022 0.0000 4 6 3.5735 1.2140 0.0063 5 6 4.2805 0.0091 0.0121 6 6 5.7558 0.0145 0.0194 7 8 6.3702 -0.6053 -0.8272 8 7 6.4225 0.7065 0.9644 9 6 5.6991 1.3608 2.0633 10 6 6.3047 0.8913 3.3947 11 6 7.8113 1.1604 3.3862 12 6 8.4666 0.3674 2.2532 13 1 8.2681 -0.6955 2.3910 14 6 9.9543 0.6078 2.2660 15 1 10.3897 1.2589 3.0095 16 6 10.7594 -0.0034 1.3283 17 7 10.2291 -0.7965 0.4231 18 14 12.6035 0.2940 1.3445 19 1 13.1653 -0.1514 2.6449 20 1 13.2383 -0.4730 0.2427 21 1 12.8729 1.7426 1.1590 22 6 7.8860 0.8263 0.9120 23 6 3.5802 -1.2047 0.0121 24 8 4.2557 -2.3811 0.0172 25 6 2.1931 -1.1980 0.0058 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6501 2.1342 -0.0045 30 1 4.1062 2.1536 0.0058 31 1 5.7998 2.4425 1.9741 32 1 4.6454 1.0852 2.0222 33 1 6.1267 -0.1765 3.5218 34 1 5.8422 1.4375 4.2167 35 1 8.2404 0.8532 4.3400 36 1 7.9889 2.2250 3.2343 37 1 10.7957 -1.2269 -0.2364 38 1 8.2755 0.1979 0.1110 39 1 8.1614 1.8653 0.7308 40 1 4.4483 -2.7203 0.9021 41 1 1.6493 -2.1310 0.0061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397788225.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:23 Heat of formation + Delta-G solvation = -61.025500 kcal Electronic energy + Delta-G solvation = -23425.307286 eV Core-core repulsion = 20076.816540 eV Total energy + Delta-G solvation = -3348.490746 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.34439 -38.64125 -36.91302 -36.46203 -33.55038 -32.57540 -31.60379 -29.97837 -29.75224 -27.61746 -25.05181 -24.52003 -22.72384 -21.98073 -21.76992 -19.96726 -18.67689 -17.73634 -17.00912 -16.10664 -16.07786 -15.63803 -14.97401 -14.54865 -14.42763 -14.05008 -13.95859 -13.74793 -13.60139 -13.13531 -12.79429 -12.68620 -12.56704 -12.19172 -12.02398 -11.82993 -11.80670 -11.50593 -10.97696 -10.88450 -10.59384 -10.50534 -10.39511 -10.22563 -9.87917 -9.30251 -9.12090 -8.93221 -8.80276 -8.54044 -8.41660 -7.71113 -5.97405 -4.07107 0.99149 1.22041 3.17919 3.32795 3.39127 3.40216 3.56870 3.82420 4.18873 4.44131 4.67327 4.75166 4.90657 5.15161 5.16754 5.31451 5.34678 5.36550 5.43341 5.50701 5.57099 5.67651 5.80595 5.88839 5.98740 6.14968 6.19584 6.30902 6.31083 6.39420 6.59892 6.67719 6.70631 6.85914 6.97914 7.16297 7.31070 7.65283 7.74572 7.88279 8.01292 8.26939 8.40167 8.89461 8.97590 9.58602 11.07486 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028241 B = 0.004276 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.231302 B = 6546.325945 C = 7027.190473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.062 4.062 3 C -0.137 4.137 4 C -0.071 4.071 5 C -0.146 4.146 6 C 0.547 3.453 7 O -0.516 6.516 8 N -0.602 5.602 9 C 0.106 3.894 10 C -0.132 4.132 11 C -0.111 4.111 12 C 0.041 3.959 13 H 0.028 0.972 14 C -0.524 4.524 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.879 5.879 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.113 3.887 23 C 0.154 3.846 24 O -0.483 6.483 25 C -0.153 4.153 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.051 0.949 36 H 0.049 0.951 37 H 0.264 0.736 38 H 0.123 0.877 39 H 0.042 0.958 40 H 0.392 0.608 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.107 3.566 2.968 19.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.063 4.063 3 C -0.155 4.155 4 C -0.090 4.090 5 C -0.150 4.150 6 C 0.333 3.667 7 O -0.391 6.391 8 N -0.335 5.335 9 C -0.017 4.017 10 C -0.171 4.171 11 C -0.148 4.148 12 C 0.022 3.978 13 H 0.046 0.954 14 C -0.562 4.562 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.516 5.516 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.212 1.212 21 H -0.203 1.203 22 C -0.007 4.007 23 C 0.108 3.892 24 O -0.293 6.293 25 C -0.172 4.172 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.145 0.855 30 H 0.149 0.851 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.141 0.859 39 H 0.060 0.940 40 H 0.249 0.751 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.717 3.157 1.736 19.060 hybrid contribution 1.083 0.135 0.521 1.209 sum -17.633 3.292 2.257 18.079 Atomic orbital electron populations 1.20820 0.90836 1.02914 1.02542 1.19868 0.96154 0.92578 0.97665 1.20931 0.93745 0.97678 1.03129 1.21185 0.94021 0.96899 0.96879 1.20597 0.94928 0.93861 1.05585 1.18094 0.86046 0.79977 0.82542 1.90840 1.68575 1.41635 1.38079 1.48470 1.09625 1.51051 1.24327 1.21816 0.95682 0.96853 0.87374 1.22014 0.98402 1.00994 0.95661 1.21632 0.92379 1.00326 1.00496 1.18948 0.94312 0.95396 0.89123 0.95358 1.21036 0.91146 1.29117 1.14913 0.92435 1.25059 0.98671 0.94810 0.95458 1.69885 1.35394 1.29523 1.16787 0.86658 0.85503 0.78268 0.77571 1.20304 1.21249 1.20261 1.22307 0.73593 1.00534 1.04302 1.18436 0.89414 0.84677 0.96679 1.84824 1.76446 1.34875 1.33183 1.21232 0.92902 0.98523 1.04528 0.90925 0.91408 0.91278 0.85455 0.85118 0.92098 0.90925 0.92295 0.92290 0.93040 0.93182 0.92555 0.85913 0.93954 0.75109 0.85110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 10.00 36.01 0.36 -0.44 16 2 C -0.06 -0.65 5.88 -104.57 -0.62 -1.26 16 3 C -0.14 -1.46 9.67 -39.63 -0.38 -1.84 16 4 C -0.07 -0.94 7.76 -39.20 -0.30 -1.24 16 5 C -0.15 -2.43 4.62 -104.85 -0.48 -2.91 16 6 C 0.55 11.62 6.83 -12.47 -0.09 11.53 16 7 O -0.52 -13.54 16.17 1.81 0.03 -13.51 16 8 N -0.60 -12.27 2.97 -173.73 -0.52 -12.78 16 9 C 0.11 1.68 5.59 -3.48 -0.02 1.66 16 10 C -0.13 -2.13 6.10 -26.38 -0.16 -2.29 16 11 C -0.11 -2.19 5.10 -26.69 -0.14 -2.33 16 12 C 0.04 1.02 2.25 -91.65 -0.21 0.82 16 13 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 14 C -0.52 -14.23 8.56 -34.44 -0.29 -14.52 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 17 N -0.88 -25.92 11.39 55.43 0.63 -25.28 16 18 Si 0.89 21.38 29.54 -169.99 -5.02 16.35 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.11 2.75 5.41 -3.72 -0.02 2.73 16 23 C 0.15 2.37 6.70 -38.70 -0.26 2.11 16 24 O -0.48 -7.86 12.69 -22.14 -0.28 -8.14 16 25 C -0.15 -1.85 9.62 -39.47 -0.38 -2.23 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 30 H 0.13 1.59 7.75 -52.48 -0.41 1.18 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.99 5.37 -51.93 -0.28 0.71 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 38 H 0.12 3.54 5.11 -51.93 -0.27 3.27 16 39 H 0.04 1.02 8.14 -51.92 -0.42 0.60 16 40 H 0.39 4.69 9.06 45.56 0.41 5.10 16 41 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 LS Contribution 334.24 15.07 5.04 5.04 Total: -1.00 -33.77 334.24 -8.35 -42.12 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.15 Total: 4.76 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -3.08 Total: -8.56 kcal Atomic # 7 Polarization: -38.18 SS G_CDS: 0.12 Total: -38.07 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.25 Total: -21.65 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -33.77 -8.35 -42.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397788225.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.901 kcal (2) G-P(sol) polarization free energy of solvation -33.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds