Wall clock time and date at job start Tue Mar 31 2020 06:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38544 * 119.80664 * 2 1 4 4 C 1.37791 * 120.29999 * 179.69850 * 3 2 1 5 5 C 1.39703 * 119.90848 * 0.02562 * 4 3 2 6 6 C 1.47530 * 120.19231 * 180.02562 * 5 4 3 7 7 O 1.21590 * 120.00251 * 233.90100 * 6 5 4 8 8 N 1.34781 * 120.00256 * 53.89771 * 6 5 4 9 9 C 1.46931 * 120.62757 * 5.50435 * 8 6 5 10 10 C 1.53624 * 108.54011 * 126.36869 * 9 8 6 11 11 C 1.53044 * 109.23872 * 54.85818 * 10 9 8 12 12 C 1.53038 * 109.53930 * 298.50898 * 11 10 9 13 13 H 1.09000 * 109.49589 * 301.41324 * 12 11 10 14 14 C 1.50708 * 109.49692 * 181.31823 * 12 11 10 15 15 H 1.07998 * 119.99599 * 0.16025 * 14 12 11 16 16 C 1.37874 * 119.99692 * 180.16504 * 14 12 11 17 17 N 1.31516 * 120.00150 * 359.97438 * 16 14 12 18 18 Si 1.86806 * 119.99822 * 180.02562 * 16 14 12 19 19 H 1.48493 * 109.47141 * 59.99423 * 18 16 14 20 20 H 1.48496 * 109.46893 * 179.97438 * 18 16 14 21 21 H 1.48507 * 109.46847 * 299.99524 * 18 16 14 22 22 C 1.46925 * 120.63429 * 185.78845 * 8 6 5 23 23 C 1.40134 * 119.61595 * 359.97438 * 5 4 3 24 24 O 1.35655 * 120.15112 * 179.97438 * 23 5 4 25 25 C 1.38058 * 119.79978 * 179.72430 * 2 1 3 26 26 H 1.08999 * 109.46891 * 89.99662 * 1 2 3 27 27 H 1.08994 * 109.47423 * 210.00295 * 1 2 3 28 28 H 1.09001 * 109.46938 * 330.00233 * 1 2 3 29 29 H 1.07998 * 119.84951 * 359.72313 * 3 2 1 30 30 H 1.08004 * 120.04506 * 179.97438 * 4 3 2 31 31 H 1.08998 * 109.58956 * 246.20474 * 9 8 6 32 32 H 1.09002 * 109.58351 * 6.63395 * 9 8 6 33 33 H 1.08998 * 109.63959 * 294.87032 * 10 9 8 34 34 H 1.08999 * 109.46092 * 174.74032 * 10 9 8 35 35 H 1.09006 * 109.45745 * 178.48675 * 11 10 9 36 36 H 1.08995 * 109.44875 * 58.52486 * 11 10 9 37 37 H 0.97009 * 119.99908 * 180.02562 * 17 16 14 38 38 H 1.09006 * 109.58541 * 353.37304 * 22 8 6 39 39 H 1.09008 * 109.58661 * 113.79320 * 22 8 6 40 40 H 0.96701 * 114.00197 * 89.99725 * 24 23 5 41 41 H 1.07997 * 119.96203 * 0.25411 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2022 0.0000 4 6 3.5735 1.2140 0.0063 5 6 4.2805 0.0091 0.0121 6 6 5.7558 0.0145 0.0194 7 8 6.3702 -0.6053 -0.8272 8 7 6.4225 0.7065 0.9644 9 6 5.6991 1.3608 2.0633 10 6 6.3047 0.8913 3.3947 11 6 7.8113 1.1604 3.3862 12 6 8.4666 0.3674 2.2532 13 1 8.2681 -0.6955 2.3910 14 6 9.9543 0.6078 2.2660 15 1 10.3897 1.2589 3.0095 16 6 10.7594 -0.0034 1.3283 17 7 10.2291 -0.7965 0.4231 18 14 12.6035 0.2940 1.3445 19 1 13.1653 -0.1514 2.6449 20 1 13.2383 -0.4730 0.2427 21 1 12.8729 1.7426 1.1590 22 6 7.8860 0.8263 0.9120 23 6 3.5802 -1.2047 0.0121 24 8 4.2557 -2.3811 0.0172 25 6 2.1931 -1.1980 0.0058 26 1 -0.3633 0.0001 -1.0277 27 1 -0.3634 -0.8899 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6501 2.1342 -0.0045 30 1 4.1062 2.1536 0.0058 31 1 5.7998 2.4425 1.9741 32 1 4.6454 1.0852 2.0222 33 1 6.1267 -0.1765 3.5218 34 1 5.8422 1.4375 4.2167 35 1 8.2404 0.8532 4.3400 36 1 7.9889 2.2250 3.2343 37 1 10.7957 -1.2269 -0.2364 38 1 8.2755 0.1979 0.1110 39 1 8.1614 1.8653 0.7308 40 1 4.4483 -2.7203 0.9021 41 1 1.6493 -2.1310 0.0061 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397788225.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:23 Heat of formation + Delta-G solvation = -84.300647 kcal Electronic energy + Delta-G solvation = -23426.316572 eV Core-core repulsion = 20076.816540 eV Total energy + Delta-G solvation = -3349.500032 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.63866 -40.02960 -38.27726 -37.89115 -35.37282 -33.91283 -33.09863 -31.51787 -30.95855 -28.63789 -26.98889 -26.01492 -23.78476 -23.37781 -23.10700 -21.49898 -20.20905 -18.94994 -18.60396 -17.95992 -17.33038 -16.97275 -16.55653 -16.15323 -15.71987 -15.46901 -15.21073 -14.93428 -14.68981 -14.51106 -14.37682 -14.21807 -13.82976 -13.49598 -13.40146 -12.98523 -12.86383 -12.82720 -12.58661 -12.37179 -12.29049 -12.24105 -11.85345 -11.68642 -11.64397 -11.14396 -10.96911 -10.68080 -10.52922 -9.82291 -9.60463 -9.39695 -8.11444 -6.29930 -0.05617 0.26677 1.39652 1.41466 1.50048 1.72204 2.17401 2.41418 2.60250 3.16111 3.17147 3.55746 3.86115 3.97797 4.04999 4.13788 4.28847 4.34125 4.38214 4.56273 4.58742 4.70404 4.75092 4.78504 4.83963 4.92021 4.99016 5.06978 5.20119 5.23329 5.25109 5.29220 5.31496 5.37025 5.53100 5.54502 5.62922 5.84228 5.87629 5.98083 6.31017 6.61507 6.71001 6.83413 7.28305 7.40942 8.91350 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.028241 B = 0.004276 C = 0.003984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.231302 B = 6546.325945 C = 7027.190473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.048 4.048 3 C -0.125 4.125 4 C -0.070 4.070 5 C -0.177 4.177 6 C 0.543 3.457 7 O -0.586 6.586 8 N -0.602 5.602 9 C 0.103 3.897 10 C -0.125 4.125 11 C -0.105 4.105 12 C 0.040 3.960 13 H -0.017 1.017 14 C -0.538 4.538 15 H 0.064 0.936 16 C 0.008 3.992 17 N -0.916 5.916 18 Si 0.959 3.041 19 H -0.267 1.267 20 H -0.290 1.290 21 H -0.265 1.265 22 C 0.125 3.875 23 C 0.132 3.868 24 O -0.510 6.510 25 C -0.153 4.153 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.167 0.833 30 H 0.140 0.860 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.047 0.953 34 H 0.106 0.894 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.259 0.741 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.403 0.597 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.354 5.917 4.603 23.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.048 4.048 3 C -0.142 4.142 4 C -0.089 4.089 5 C -0.181 4.181 6 C 0.332 3.668 7 O -0.467 6.467 8 N -0.334 5.334 9 C -0.018 4.018 10 C -0.163 4.163 11 C -0.142 4.142 12 C 0.021 3.979 13 H 0.001 0.999 14 C -0.576 4.576 15 H 0.082 0.918 16 C -0.191 4.191 17 N -0.555 5.555 18 Si 0.784 3.216 19 H -0.192 1.192 20 H -0.216 1.216 21 H -0.190 1.190 22 C 0.003 3.997 23 C 0.086 3.914 24 O -0.322 6.322 25 C -0.171 4.171 26 H 0.102 0.898 27 H 0.097 0.903 28 H 0.109 0.891 29 H 0.185 0.815 30 H 0.158 0.842 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.066 0.934 34 H 0.124 0.876 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.261 0.739 41 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -21.998 5.544 3.433 22.944 hybrid contribution 1.977 -0.596 0.030 2.065 sum -20.021 4.948 3.463 20.912 Atomic orbital electron populations 1.20930 0.87754 1.04627 1.03704 1.20370 0.98217 0.91669 0.94556 1.21348 0.92509 0.99449 1.00941 1.21333 0.95280 0.95699 0.96576 1.20321 0.91634 0.96066 1.10093 1.18902 0.88212 0.78395 0.81279 1.90786 1.70584 1.44563 1.40719 1.48478 1.08164 1.51130 1.25592 1.22165 0.96598 0.97777 0.85267 1.21988 0.95766 1.01136 0.97446 1.21517 0.94822 0.99772 0.98106 1.18883 0.94067 0.93582 0.91410 0.99862 1.21507 0.92775 1.28680 1.14655 0.91755 1.25940 1.03503 0.94587 0.95077 1.70114 1.36802 1.30916 1.17634 0.85593 0.79775 0.78542 0.77666 1.19191 1.21624 1.19020 1.21729 0.76600 0.98912 1.02498 1.18782 0.90792 0.83790 0.98009 1.84780 1.77143 1.35735 1.34578 1.21447 0.91261 1.00413 1.04010 0.89803 0.90286 0.89132 0.81534 0.84200 0.89675 0.88055 0.93434 0.87590 0.92848 0.92161 0.93222 0.90861 0.94212 0.73889 0.83223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.00 71.24 0.71 -0.28 16 2 C -0.05 -0.79 5.88 -19.83 -0.12 -0.91 16 3 C -0.12 -2.09 9.67 22.24 0.22 -1.88 16 4 C -0.07 -1.69 7.76 22.52 0.17 -1.51 16 5 C -0.18 -5.93 4.62 -20.01 -0.09 -6.02 16 6 C 0.54 24.36 6.83 86.69 0.59 24.95 16 7 O -0.59 -33.53 16.17 -0.68 -0.01 -33.54 16 8 N -0.60 -25.38 2.97 -821.81 -2.44 -27.81 16 9 C 0.10 3.06 5.59 86.51 0.48 3.55 16 10 C -0.13 -3.77 6.10 30.82 0.19 -3.58 16 11 C -0.10 -4.06 5.10 30.62 0.16 -3.91 16 12 C 0.04 2.06 2.25 -11.46 -0.03 2.03 16 13 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 14 C -0.54 -30.15 8.56 25.60 0.22 -29.93 16 15 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 16 C 0.01 0.48 5.30 84.65 0.45 0.93 16 17 N -0.92 -57.58 11.39 21.45 0.24 -57.33 16 18 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 22 C 0.12 6.46 5.41 86.36 0.47 6.93 16 23 C 0.13 4.08 6.70 22.84 0.15 4.23 16 24 O -0.51 -17.64 12.69 -86.38 -1.10 -18.74 16 25 C -0.15 -3.35 9.62 22.34 0.21 -3.13 16 26 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 28 H 0.09 0.47 8.08 -2.39 -0.02 0.45 16 29 H 0.17 1.55 8.06 -2.91 -0.02 1.52 16 30 H 0.14 3.02 7.75 -2.91 -0.02 3.00 16 31 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.10 2.47 5.37 -2.39 -0.01 2.46 16 33 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.26 15.76 8.31 -92.70 -0.77 14.99 16 38 H 0.07 4.59 5.11 -2.38 -0.01 4.58 16 39 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.40 10.60 9.06 -74.06 -0.67 9.93 16 41 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -81.99 334.24 2.88 -79.11 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.37 Total: 19.75 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 3.79 Total: -8.54 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -2.19 Total: -85.15 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -1.11 Total: -52.28 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -81.99 2.88 -79.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397788225.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.192 kcal (2) G-P(sol) polarization free energy of solvation -81.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds