Wall clock time and date at job start Tue Mar 31 2020 06:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38546 * 119.80547 * 2 1 4 4 C 1.37792 * 120.30049 * 179.97438 * 3 2 1 5 5 C 1.39704 * 119.90900 * 359.97438 * 4 3 2 6 6 C 1.47537 * 120.19158 * 180.02562 * 5 4 3 7 7 O 1.21589 * 119.99858 * 125.82356 * 6 5 4 8 8 N 1.34770 * 120.00105 * 305.82944 * 6 5 4 9 9 C 1.46922 * 120.63310 * 3.88189 * 8 6 5 10 10 C 1.52757 * 109.00962 * 233.58467 * 9 8 6 11 11 C 1.53041 * 109.38523 * 305.58423 * 10 9 8 12 12 C 1.53049 * 109.53424 * 61.23563 * 11 10 9 13 13 H 1.08999 * 109.49414 * 58.59629 * 12 11 10 14 14 C 1.50702 * 109.52071 * 178.66859 * 12 11 10 15 15 H 1.08000 * 120.00566 * 359.85665 * 14 12 11 16 16 C 1.37881 * 119.99646 * 179.85635 * 14 12 11 17 17 N 1.31508 * 120.00317 * 0.02562 * 16 14 12 18 18 Si 1.86798 * 119.99667 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47260 * 60.00245 * 18 16 14 20 20 H 1.48506 * 109.46977 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47440 * 299.99941 * 18 16 14 22 22 C 1.46923 * 120.63179 * 184.15529 * 8 6 5 23 23 C 1.40137 * 119.61786 * 0.02562 * 5 4 3 24 24 O 1.35650 * 120.15323 * 180.02562 * 23 5 4 25 25 C 1.38057 * 119.80562 * 180.27451 * 2 1 3 26 26 H 1.08995 * 109.46530 * 90.00002 * 1 2 3 27 27 H 1.08995 * 109.46980 * 209.99931 * 1 2 3 28 28 H 1.08999 * 109.46954 * 330.00398 * 1 2 3 29 29 H 1.07999 * 119.85281 * 0.02562 * 3 2 1 30 30 H 1.08003 * 120.04373 * 180.02562 * 4 3 2 31 31 H 1.09005 * 109.58614 * 353.41986 * 9 8 6 32 32 H 1.09001 * 109.58920 * 113.84188 * 9 8 6 33 33 H 1.09000 * 109.56895 * 185.55139 * 10 9 8 34 34 H 1.09000 * 109.39034 * 65.51268 * 10 9 8 35 35 H 1.09007 * 109.46004 * 301.22398 * 11 10 9 36 36 H 1.08995 * 109.46479 * 181.26175 * 11 10 9 37 37 H 0.96998 * 120.00469 * 180.02562 * 17 16 14 38 38 H 1.08995 * 109.59287 * 246.16019 * 22 8 6 39 39 H 1.09003 * 109.58514 * 6.44665 * 22 8 6 40 40 H 0.96695 * 113.99995 * 89.99481 * 24 23 5 41 41 H 1.07997 * 119.96007 * 0.02562 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2022 0.0000 4 6 3.5735 1.2141 0.0005 5 6 4.2806 0.0092 0.0016 6 6 5.7559 0.0147 0.0028 7 8 6.3655 -0.5990 0.8573 8 7 6.4280 0.6999 -0.9433 9 6 5.7078 1.5149 -1.9311 10 6 6.1454 1.0983 -3.3340 11 6 7.6698 1.1862 -3.4377 12 6 8.3075 0.2302 -2.4269 13 1 7.9683 -0.7868 -2.6240 14 6 9.8080 0.2929 -2.5517 15 1 10.2624 0.9473 -3.2809 16 6 10.6008 -0.4853 -1.7350 17 7 10.0476 -1.2825 -0.8474 18 14 12.4607 -0.4070 -1.8892 19 1 12.9218 0.9790 -1.6218 20 1 13.0784 -1.3330 -0.9061 21 1 12.8608 -0.8054 -3.2627 22 6 7.8945 0.6415 -1.0102 23 6 3.5803 -1.2047 0.0016 24 8 4.2559 -2.3810 0.0032 25 6 2.1932 -1.1979 -0.0057 26 1 -0.3632 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 1.6501 2.1343 0.0004 30 1 4.1062 2.1536 0.0009 31 1 4.6347 1.3569 -1.8225 32 1 5.9416 2.5682 -1.7761 33 1 5.6919 1.7620 -4.0701 34 1 5.8265 0.0733 -3.5232 35 1 7.9900 2.2062 -3.2247 36 1 7.9818 0.9107 -4.4450 37 1 10.6053 -1.8297 -0.2726 38 1 8.3103 1.6220 -0.7786 39 1 8.2642 -0.0909 -0.2925 40 1 4.4508 -2.7215 0.8870 41 1 1.6494 -2.1310 -0.0106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397788226.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:26 Heat of formation + Delta-G solvation = -60.965054 kcal Electronic energy + Delta-G solvation = -23451.093097 eV Core-core repulsion = 20102.604972 eV Total energy + Delta-G solvation = -3348.488125 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.36178 -38.63390 -36.92177 -36.44772 -33.57456 -32.56767 -31.60148 -29.98891 -29.73832 -27.61667 -25.04710 -24.52559 -22.74575 -21.96127 -21.72240 -19.99355 -18.61201 -17.69518 -17.06472 -16.10739 -16.07233 -15.38488 -15.23057 -14.58822 -14.33649 -14.10348 -13.97851 -13.69516 -13.57694 -13.20982 -12.76085 -12.66811 -12.55664 -12.22517 -11.95607 -11.83772 -11.72055 -11.53744 -10.95753 -10.85822 -10.57527 -10.48175 -10.34923 -10.20256 -9.86634 -9.34459 -9.10751 -8.92283 -8.77513 -8.52982 -8.40076 -7.71267 -5.96632 -4.05735 0.99542 1.22317 3.18552 3.33623 3.39525 3.40864 3.51655 3.87652 4.25613 4.45085 4.67503 4.74468 4.88897 5.16499 5.17858 5.32853 5.36331 5.37545 5.44435 5.54564 5.58226 5.72737 5.82646 5.89437 6.01753 6.16003 6.23229 6.32162 6.34959 6.39682 6.63813 6.70224 6.72345 6.88908 7.00753 7.18193 7.30942 7.66757 7.78872 7.90568 8.02821 8.27369 8.41395 8.86419 8.98721 9.59636 11.08617 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.027590 B = 0.004358 C = 0.004015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.628213 B = 6423.066682 C = 6971.690046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.062 4.062 3 C -0.138 4.138 4 C -0.073 4.073 5 C -0.148 4.148 6 C 0.556 3.444 7 O -0.534 6.534 8 N -0.596 5.596 9 C 0.102 3.898 10 C -0.134 4.134 11 C -0.110 4.110 12 C 0.040 3.960 13 H 0.029 0.971 14 C -0.522 4.522 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.880 5.880 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.114 3.886 23 C 0.157 3.843 24 O -0.488 6.488 25 C -0.154 4.154 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.051 0.949 37 H 0.264 0.736 38 H 0.042 0.958 39 H 0.123 0.877 40 H 0.399 0.601 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.695 4.753 1.263 19.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.062 4.062 3 C -0.156 4.156 4 C -0.092 4.092 5 C -0.151 4.151 6 C 0.343 3.657 7 O -0.411 6.411 8 N -0.328 5.328 9 C -0.022 4.022 10 C -0.172 4.172 11 C -0.148 4.148 12 C 0.021 3.979 13 H 0.047 0.953 14 C -0.561 4.561 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.517 5.517 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C -0.006 4.006 23 C 0.111 3.889 24 O -0.300 6.300 25 C -0.172 4.172 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.141 0.859 40 H 0.257 0.743 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.310 4.340 1.264 18.860 hybrid contribution 1.097 -0.019 0.319 1.143 sum -17.213 4.321 1.583 17.817 Atomic orbital electron populations 1.20819 0.90831 1.02905 1.02558 1.19868 0.96155 0.92571 0.97598 1.20924 0.93719 0.97690 1.03252 1.21205 0.94100 0.96900 0.96981 1.20601 0.94889 0.93928 1.05715 1.18005 0.85964 0.79522 0.82211 1.90775 1.69214 1.43784 1.37370 1.48419 1.09462 1.46154 1.28778 1.21762 0.96466 0.94608 0.89333 1.21870 0.98774 1.01255 0.95342 1.21628 0.92233 1.00443 1.00488 1.18966 0.94999 0.94521 0.89428 0.95272 1.21041 0.90447 1.24772 1.19801 0.92403 1.25056 0.98719 0.95008 0.95226 1.69878 1.35270 1.25374 1.21202 0.86648 0.85594 0.77883 0.77806 1.20260 1.21259 1.20295 1.22310 0.73448 1.01582 1.03265 1.18405 0.89387 0.84746 0.96342 1.84711 1.76403 1.34836 1.34007 1.21230 0.92887 0.98546 1.04549 0.90871 0.91414 0.91309 0.85445 0.85051 0.90518 0.92042 0.92224 0.92168 0.93196 0.93011 0.92602 0.93934 0.85947 0.74326 0.85086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.00 36.01 0.36 -0.45 16 2 C -0.06 -0.65 5.88 -104.57 -0.62 -1.26 16 3 C -0.14 -1.47 9.67 -39.63 -0.38 -1.85 16 4 C -0.07 -0.96 7.43 -39.20 -0.29 -1.25 16 5 C -0.15 -2.48 4.89 -104.85 -0.51 -2.99 16 6 C 0.56 11.88 6.85 -12.47 -0.09 11.80 16 7 O -0.53 -13.42 16.19 2.12 0.03 -13.39 16 8 N -0.60 -12.57 2.98 -174.27 -0.52 -13.09 16 9 C 0.10 1.69 5.50 -3.94 -0.02 1.67 16 10 C -0.13 -2.30 6.06 -26.83 -0.16 -2.47 16 11 C -0.11 -2.26 5.11 -26.68 -0.14 -2.40 16 12 C 0.04 1.02 2.25 -91.65 -0.21 0.81 16 13 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 14 C -0.52 -14.39 8.57 -34.44 -0.29 -14.68 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 17 N -0.88 -26.07 11.39 55.43 0.63 -25.44 16 18 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C 0.11 2.84 5.39 -3.71 -0.02 2.82 16 23 C 0.16 2.46 6.70 -38.69 -0.26 2.20 16 24 O -0.49 -8.14 12.70 -21.82 -0.28 -8.41 16 25 C -0.15 -1.88 9.62 -39.47 -0.38 -2.26 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 28 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.13 1.56 7.38 -52.48 -0.39 1.17 16 31 H 0.08 1.12 4.75 -51.93 -0.25 0.87 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.05 0.99 8.14 -51.92 -0.42 0.56 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.12 3.56 5.15 -51.93 -0.27 3.29 16 40 H 0.40 5.23 9.06 45.56 0.41 5.64 16 41 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -33.35 333.14 -8.33 -41.68 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.10 Total: 5.79 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -3.10 Total: -8.64 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.11 Total: -38.53 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.24 Total: -21.80 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -33.35 -8.33 -41.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397788226.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.287 kcal (2) G-P(sol) polarization free energy of solvation -33.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds