Wall clock time and date at job start Tue Mar 31 2020 06:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38101 * 119.95349 * 2 1 4 4 C 1.38504 * 120.38341 * 179.97438 * 3 2 1 5 5 C 1.37825 * 120.30266 * 359.78909 * 4 3 2 6 6 C 1.39665 * 119.90999 * 0.46102 * 5 4 3 7 7 C 1.47535 * 120.19635 * 179.79104 * 6 5 4 8 8 O 1.21587 * 120.00470 * 234.33404 * 7 6 5 9 9 N 1.34782 * 119.99905 * 54.32970 * 7 6 5 10 10 C 1.46928 * 120.62552 * 355.46459 * 9 7 6 11 11 C 1.53199 * 108.77199 * 126.66899 * 10 9 7 12 12 C 1.53036 * 109.31277 * 54.63458 * 11 10 9 13 13 C 1.53043 * 109.53891 * 298.63544 * 12 11 10 14 14 H 1.09007 * 109.49648 * 301.41685 * 13 12 11 15 15 C 1.50698 * 109.52840 * 181.33567 * 13 12 11 16 16 H 1.08001 * 119.99643 * 0.14424 * 15 13 12 17 17 C 1.37870 * 120.00472 * 180.14578 * 15 13 12 18 18 N 1.31509 * 120.00515 * 179.97438 * 17 15 13 19 19 Si 1.86806 * 119.99865 * 359.97438 * 17 15 13 20 20 H 1.48496 * 109.47088 * 90.00201 * 19 17 15 21 21 H 1.48501 * 109.47362 * 210.00285 * 19 17 15 22 22 H 1.48498 * 109.47243 * 330.00278 * 19 17 15 23 23 C 1.46925 * 120.63047 * 175.74989 * 9 7 6 24 24 C 1.38665 * 119.95749 * 180.02562 * 2 1 3 25 25 O 1.35651 * 120.15208 * 359.95914 * 24 2 1 26 26 H 1.08995 * 109.47414 * 269.98192 * 1 2 3 27 27 H 1.09002 * 109.47205 * 29.98212 * 1 2 3 28 28 H 1.09008 * 109.46633 * 149.97656 * 1 2 3 29 29 H 1.07996 * 119.80528 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.84421 * 180.02562 * 4 3 2 31 31 H 1.08006 * 120.04880 * 180.23674 * 5 4 3 32 32 H 1.09001 * 109.58886 * 246.45128 * 10 9 7 33 33 H 1.08996 * 109.59116 * 6.88062 * 10 9 7 34 34 H 1.08994 * 109.49384 * 294.68376 * 11 10 9 35 35 H 1.08999 * 109.49223 * 174.58059 * 11 10 9 36 36 H 1.09001 * 109.45996 * 178.61675 * 12 11 10 37 37 H 1.09000 * 109.45185 * 58.64738 * 12 11 10 38 38 H 0.97006 * 120.00231 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.58552 * 353.11704 * 23 9 7 40 40 H 1.09000 * 109.58910 * 113.54447 * 23 9 7 41 41 H 0.96703 * 113.99948 * 270.02122 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1966 1.1966 0.0000 4 6 3.5816 1.2069 0.0005 5 6 4.2859 0.0223 0.0055 6 6 3.6012 -1.1950 0.0002 7 6 4.3489 -2.4669 0.0007 8 8 4.1313 -3.3005 -0.8573 9 7 5.2732 -2.7049 0.9524 10 6 5.6183 -1.6695 1.9361 11 6 5.4715 -2.2578 3.3430 12 6 6.3132 -3.5315 3.4494 13 6 5.8087 -4.5643 2.4390 14 1 4.7585 -4.7816 2.6344 15 6 6.6165 -5.8301 2.5665 16 1 7.4093 -5.8933 3.2971 17 6 6.3434 -6.9073 1.7506 18 7 7.0486 -8.0118 1.8615 19 14 4.9715 -6.7982 0.4873 20 1 5.5181 -6.2832 -0.7937 21 1 4.3896 -8.1471 0.2706 22 1 3.9162 -5.8774 0.9809 23 6 5.9593 -4.0022 1.0218 24 6 2.1995 -1.2014 -0.0005 25 8 1.5235 -2.3775 -0.0002 26 1 -0.3634 -0.0003 1.0276 27 1 -0.3634 0.8902 -0.5136 28 1 -0.3633 -0.8899 -0.5142 29 1 1.6527 2.1295 0.0004 30 1 4.1120 2.1477 0.0009 31 1 5.3659 0.0352 0.0097 32 1 6.6477 -1.3464 1.7808 33 1 4.9454 -0.8195 1.8235 34 1 4.4247 -2.4969 3.5299 35 1 5.8164 -1.5313 4.0788 36 1 6.2300 -3.9386 4.4571 37 1 7.3562 -3.2960 3.2379 38 1 6.8562 -8.7699 1.2876 39 1 5.5113 -4.6913 0.3059 40 1 7.0164 -3.8694 0.7919 41 1 1.3277 -2.7184 0.8833 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397789762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:28 Heat of formation + Delta-G solvation = -51.153971 kcal Electronic energy + Delta-G solvation = -23776.974422 eV Core-core repulsion = 20428.911737 eV Total energy + Delta-G solvation = -3348.062685 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.63810 -38.99726 -36.94099 -36.70134 -33.69956 -32.76293 -31.89080 -30.70047 -30.04960 -27.08383 -25.43758 -25.17922 -22.97589 -22.17257 -21.73897 -19.86356 -18.86683 -18.19857 -17.02460 -16.70114 -16.28739 -16.08961 -15.40868 -14.73985 -14.48672 -14.10244 -14.03356 -13.85600 -13.54322 -13.45635 -13.00243 -12.86069 -12.62492 -12.39845 -12.33651 -12.20502 -12.02039 -11.65031 -11.26345 -11.08761 -10.71737 -10.61397 -10.41085 -10.11425 -9.78601 -9.60703 -9.25522 -9.10026 -8.88501 -8.71687 -8.60190 -8.07605 -6.11357 -4.13212 0.86281 1.05141 2.91913 3.28950 3.38719 3.46978 3.55373 3.57514 4.07342 4.41809 4.55379 4.59432 4.72545 5.00179 5.09921 5.19435 5.21274 5.29883 5.33332 5.38326 5.48462 5.54575 5.61212 5.78503 5.91244 5.98571 6.07107 6.08316 6.10848 6.19768 6.26200 6.36875 6.51135 6.56282 6.63142 6.73067 6.85769 7.12443 7.40925 7.58378 7.70517 7.82923 8.44486 8.55518 8.91571 9.50294 11.00542 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.005469 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.645199 B = 5118.555469 C = 5798.606633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.117 4.117 3 C -0.093 4.093 4 C -0.130 4.130 5 C -0.082 4.082 6 C -0.139 4.139 7 C 0.550 3.450 8 O -0.526 6.526 9 N -0.602 5.602 10 C 0.101 3.899 11 C -0.136 4.136 12 C -0.101 4.101 13 C 0.006 3.994 14 H 0.029 0.971 15 C -0.517 4.517 16 H 0.078 0.922 17 C 0.074 3.926 18 N -0.895 5.895 19 Si 0.879 3.121 20 H -0.272 1.272 21 H -0.295 1.295 22 H -0.265 1.265 23 C 0.102 3.898 24 C 0.150 3.850 25 O -0.482 6.482 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.265 0.735 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.444 21.133 0.220 23.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.118 4.118 3 C -0.112 4.112 4 C -0.148 4.148 5 C -0.101 4.101 6 C -0.143 4.143 7 C 0.337 3.663 8 O -0.403 6.403 9 N -0.334 5.334 10 C -0.022 4.022 11 C -0.174 4.174 12 C -0.138 4.138 13 C -0.014 4.014 14 H 0.047 0.953 15 C -0.555 4.555 16 H 0.096 0.904 17 C -0.129 4.129 18 N -0.533 5.533 19 Si 0.709 3.291 20 H -0.199 1.199 21 H -0.222 1.222 22 H -0.190 1.190 23 C -0.018 4.018 24 C 0.104 3.896 25 O -0.292 6.292 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.146 0.854 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -9.485 20.516 -0.913 22.621 hybrid contribution -0.591 -0.136 -0.256 0.658 sum -10.076 20.380 -1.168 22.765 Atomic orbital electron populations 1.20692 0.90307 1.03380 1.02406 1.20179 0.96936 0.92171 1.02515 1.21046 0.94192 0.97105 0.98825 1.21050 0.94127 0.97953 1.01711 1.21204 1.00236 0.90829 0.97843 1.20451 0.93773 0.94557 1.05492 1.18172 0.79886 0.86179 0.82085 1.90813 1.65968 1.46620 1.36862 1.48391 1.39399 1.16195 1.29461 1.21937 1.00741 0.90553 0.88963 1.21982 1.01223 0.98861 0.95310 1.21446 0.98470 0.93707 1.00213 1.19481 0.97737 0.94476 0.89684 0.95250 1.20946 1.18646 0.95011 1.20920 0.90424 1.25032 0.95762 0.95213 0.96868 1.69886 1.40013 1.03927 1.39452 0.86995 0.83309 0.76381 0.82399 1.19891 1.22237 1.18968 1.22642 0.96005 0.81624 1.01518 1.18234 0.88064 0.85503 0.97790 1.84788 1.75661 1.35529 1.33211 0.91196 0.91381 0.90673 0.85400 0.85212 0.84981 0.91425 0.90025 0.92178 0.91609 0.92183 0.92452 0.92474 0.90317 0.91424 0.75178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.79 36.01 0.35 -0.61 16 2 C -0.12 -1.31 5.89 -104.51 -0.62 -1.93 16 3 C -0.09 -0.87 9.68 -39.53 -0.38 -1.25 16 4 C -0.13 -1.23 10.02 -39.63 -0.40 -1.62 16 5 C -0.08 -0.98 7.42 -39.20 -0.29 -1.27 16 6 C -0.14 -2.16 4.90 -104.85 -0.51 -2.67 16 7 C 0.55 10.93 6.85 -12.47 -0.09 10.85 16 8 O -0.53 -12.94 16.21 2.65 0.04 -12.90 16 9 N -0.60 -11.42 2.97 -173.99 -0.52 -11.94 16 10 C 0.10 1.44 5.53 -3.71 -0.02 1.42 16 11 C -0.14 -1.97 6.08 -26.61 -0.16 -2.13 16 12 C -0.10 -1.87 5.11 -26.69 -0.14 -2.00 16 13 C 0.01 0.13 1.84 -91.65 -0.17 -0.03 16 14 H 0.03 0.72 7.20 -51.93 -0.37 0.35 16 15 C -0.52 -14.35 9.15 -34.44 -0.32 -14.66 16 16 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 17 C 0.07 2.16 5.45 -17.82 -0.10 2.07 16 18 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 19 Si 0.88 23.60 24.32 -169.99 -4.13 19.47 16 20 H -0.27 -7.47 6.92 56.52 0.39 -7.08 16 21 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 22 H -0.26 -7.06 6.53 56.52 0.37 -6.69 16 23 C 0.10 2.33 5.10 -3.71 -0.02 2.31 16 24 C 0.15 2.16 6.68 -38.70 -0.26 1.91 16 25 O -0.48 -7.33 11.76 -21.29 -0.25 -7.58 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 28 H 0.07 0.73 7.53 -51.92 -0.39 0.34 16 29 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 30 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.13 1.40 7.36 -52.48 -0.39 1.01 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.98 4.73 -51.93 -0.25 0.73 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.27 7.72 8.31 -40.82 -0.34 7.38 16 39 H 0.08 2.03 2.35 -51.93 -0.12 1.91 16 40 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 41 H 0.39 4.41 9.06 45.56 0.41 4.82 16 LS Contribution 324.96 15.07 4.90 4.90 Total: -1.00 -35.42 324.96 -7.22 -42.65 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -4.93 Total: 1.81 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -3.11 Total: -9.64 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.26 Total: -38.71 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -0.21 Total: -20.47 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -4.13 Total: 19.47 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.42 -7.22 -42.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397789762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.508 kcal (2) G-P(sol) polarization free energy of solvation -35.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds