Wall clock time and date at job start Tue Mar 31 2020 06:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38101 * 119.95349 * 2 1 4 4 C 1.38504 * 120.38341 * 179.97438 * 3 2 1 5 5 C 1.37825 * 120.30266 * 359.78909 * 4 3 2 6 6 C 1.39665 * 119.90999 * 0.46102 * 5 4 3 7 7 C 1.47535 * 120.19635 * 179.79104 * 6 5 4 8 8 O 1.21587 * 120.00470 * 234.33404 * 7 6 5 9 9 N 1.34782 * 119.99905 * 54.32970 * 7 6 5 10 10 C 1.46928 * 120.62552 * 355.46459 * 9 7 6 11 11 C 1.53199 * 108.77199 * 126.66899 * 10 9 7 12 12 C 1.53036 * 109.31277 * 54.63458 * 11 10 9 13 13 C 1.53043 * 109.53891 * 298.63544 * 12 11 10 14 14 H 1.09007 * 109.49648 * 301.41685 * 13 12 11 15 15 C 1.50698 * 109.52840 * 181.33567 * 13 12 11 16 16 H 1.08001 * 119.99643 * 0.14424 * 15 13 12 17 17 C 1.37870 * 120.00472 * 180.14578 * 15 13 12 18 18 N 1.31509 * 120.00515 * 179.97438 * 17 15 13 19 19 Si 1.86806 * 119.99865 * 359.97438 * 17 15 13 20 20 H 1.48496 * 109.47088 * 90.00201 * 19 17 15 21 21 H 1.48501 * 109.47362 * 210.00285 * 19 17 15 22 22 H 1.48498 * 109.47243 * 330.00278 * 19 17 15 23 23 C 1.46925 * 120.63047 * 175.74989 * 9 7 6 24 24 C 1.38665 * 119.95749 * 180.02562 * 2 1 3 25 25 O 1.35651 * 120.15208 * 359.95914 * 24 2 1 26 26 H 1.08995 * 109.47414 * 269.98192 * 1 2 3 27 27 H 1.09002 * 109.47205 * 29.98212 * 1 2 3 28 28 H 1.09008 * 109.46633 * 149.97656 * 1 2 3 29 29 H 1.07996 * 119.80528 * 0.02562 * 3 2 1 30 30 H 1.08002 * 119.84421 * 180.02562 * 4 3 2 31 31 H 1.08006 * 120.04880 * 180.23674 * 5 4 3 32 32 H 1.09001 * 109.58886 * 246.45128 * 10 9 7 33 33 H 1.08996 * 109.59116 * 6.88062 * 10 9 7 34 34 H 1.08994 * 109.49384 * 294.68376 * 11 10 9 35 35 H 1.08999 * 109.49223 * 174.58059 * 11 10 9 36 36 H 1.09001 * 109.45996 * 178.61675 * 12 11 10 37 37 H 1.09000 * 109.45185 * 58.64738 * 12 11 10 38 38 H 0.97006 * 120.00231 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.58552 * 353.11704 * 23 9 7 40 40 H 1.09000 * 109.58910 * 113.54447 * 23 9 7 41 41 H 0.96703 * 113.99948 * 270.02122 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1966 1.1966 0.0000 4 6 3.5816 1.2069 0.0005 5 6 4.2859 0.0223 0.0055 6 6 3.6012 -1.1950 0.0002 7 6 4.3489 -2.4669 0.0007 8 8 4.1313 -3.3005 -0.8573 9 7 5.2732 -2.7049 0.9524 10 6 5.6183 -1.6695 1.9361 11 6 5.4715 -2.2578 3.3430 12 6 6.3132 -3.5315 3.4494 13 6 5.8087 -4.5643 2.4390 14 1 4.7585 -4.7816 2.6344 15 6 6.6165 -5.8301 2.5665 16 1 7.4093 -5.8933 3.2971 17 6 6.3434 -6.9073 1.7506 18 7 7.0486 -8.0118 1.8615 19 14 4.9715 -6.7982 0.4873 20 1 5.5181 -6.2832 -0.7937 21 1 4.3896 -8.1471 0.2706 22 1 3.9162 -5.8774 0.9809 23 6 5.9593 -4.0022 1.0218 24 6 2.1995 -1.2014 -0.0005 25 8 1.5235 -2.3775 -0.0002 26 1 -0.3634 -0.0003 1.0276 27 1 -0.3634 0.8902 -0.5136 28 1 -0.3633 -0.8899 -0.5142 29 1 1.6527 2.1295 0.0004 30 1 4.1120 2.1477 0.0009 31 1 5.3659 0.0352 0.0097 32 1 6.6477 -1.3464 1.7808 33 1 4.9454 -0.8195 1.8235 34 1 4.4247 -2.4969 3.5299 35 1 5.8164 -1.5313 4.0788 36 1 6.2300 -3.9386 4.4571 37 1 7.3562 -3.2960 3.2379 38 1 6.8562 -8.7699 1.2876 39 1 5.5113 -4.6913 0.3059 40 1 7.0164 -3.8694 0.7919 41 1 1.3277 -2.7184 0.8833 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397789762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:28 Heat of formation + Delta-G solvation = -77.160843 kcal Electronic energy + Delta-G solvation = -23778.102164 eV Core-core repulsion = 20428.911737 eV Total energy + Delta-G solvation = -3349.190427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.83143 -40.24106 -38.46194 -37.74635 -35.44102 -34.09705 -33.34364 -32.26678 -31.12681 -27.90802 -27.05887 -26.80404 -24.17702 -23.63427 -22.70073 -21.39770 -20.23273 -19.25908 -18.96005 -18.31011 -17.47265 -17.14513 -16.67949 -16.37755 -15.74540 -15.65926 -15.41470 -15.12512 -14.94982 -14.60600 -14.46993 -14.19410 -13.95463 -13.76530 -13.34834 -13.24495 -13.20161 -13.03219 -12.71330 -12.43510 -12.37486 -12.17543 -11.81004 -11.71301 -11.63864 -11.30886 -11.09709 -10.88107 -10.79079 -9.87012 -9.62312 -9.55496 -8.43733 -6.44806 -0.07496 0.22362 1.17017 1.24432 1.35979 1.54514 1.97192 2.15927 2.57589 2.93657 3.16130 3.40014 3.80403 3.94269 4.02127 4.08789 4.10834 4.30109 4.33539 4.38592 4.46731 4.56059 4.61776 4.68738 4.73150 4.81011 4.84200 4.86041 4.93691 5.10151 5.18051 5.24207 5.26335 5.34603 5.37088 5.46658 5.49402 5.58766 5.65776 5.82599 6.22267 6.38483 6.64225 6.65665 7.05810 7.20965 8.72357 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.005469 C = 0.004828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.645199 B = 5118.555469 C = 5798.606633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.120 4.120 3 C -0.080 4.080 4 C -0.115 4.115 5 C -0.084 4.084 6 C -0.169 4.169 7 C 0.546 3.454 8 O -0.590 6.590 9 N -0.602 5.602 10 C 0.096 3.904 11 C -0.126 4.126 12 C -0.098 4.098 13 C 0.006 3.994 14 H 0.013 0.987 15 C -0.510 4.510 16 H 0.055 0.945 17 C 0.034 3.966 18 N -0.935 5.935 19 Si 0.934 3.066 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.270 1.270 23 C 0.107 3.893 24 C 0.123 3.877 25 O -0.507 6.507 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.056 0.944 29 H 0.168 0.832 30 H 0.171 0.829 31 H 0.145 0.855 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.055 0.945 35 H 0.110 0.890 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.268 0.732 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.428 26.152 1.046 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.120 4.120 3 C -0.098 4.098 4 C -0.133 4.133 5 C -0.103 4.103 6 C -0.172 4.172 7 C 0.336 3.664 8 O -0.471 6.471 9 N -0.333 5.333 10 C -0.025 4.025 11 C -0.164 4.164 12 C -0.135 4.135 13 C -0.014 4.014 14 H 0.031 0.969 15 C -0.549 4.549 16 H 0.073 0.927 17 C -0.165 4.165 18 N -0.575 5.575 19 Si 0.764 3.236 20 H -0.216 1.216 21 H -0.219 1.219 22 H -0.195 1.195 23 C -0.015 4.015 24 C 0.078 3.922 25 O -0.319 6.319 26 H 0.103 0.897 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.185 0.815 30 H 0.188 0.812 31 H 0.162 0.838 32 H 0.108 0.892 33 H 0.130 0.870 34 H 0.074 0.926 35 H 0.129 0.871 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.063 0.937 40 H 0.084 0.916 41 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -10.472 25.577 -0.043 27.638 hybrid contribution -0.279 -1.582 -0.472 1.675 sum -10.751 23.995 -0.515 26.298 Atomic orbital electron populations 1.20734 0.88750 1.03606 1.03472 1.20469 0.98165 0.91590 1.01808 1.21564 0.94506 0.97692 0.95999 1.21498 0.94299 0.98354 0.99150 1.21406 1.00989 0.90286 0.97617 1.20254 0.94017 0.93397 1.09578 1.18949 0.79354 0.87218 0.80920 1.90761 1.67747 1.49246 1.39344 1.48414 1.38890 1.15582 1.30410 1.22328 1.02835 0.89981 0.87329 1.21944 1.00221 0.97557 0.96679 1.21388 0.99410 0.94412 0.98337 1.19416 0.95992 0.94196 0.91759 0.96880 1.21321 1.17689 0.96734 1.19107 0.92689 1.25541 0.97242 0.95355 0.98399 1.69966 1.41784 1.04776 1.40961 0.86141 0.81421 0.75828 0.80191 1.21563 1.21869 1.19510 1.22165 0.95978 0.83513 0.99871 1.18602 0.87984 0.86198 0.99462 1.84753 1.75941 1.36793 1.34402 0.89660 0.89055 0.92516 0.81478 0.81169 0.83755 0.89195 0.86954 0.92580 0.87136 0.92273 0.91981 0.92299 0.93712 0.91586 0.74203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.79 71.24 0.70 -0.87 16 2 C -0.12 -2.31 5.89 -19.79 -0.12 -2.42 16 3 C -0.08 -1.05 9.68 22.30 0.22 -0.83 16 4 C -0.12 -1.52 10.02 22.24 0.22 -1.29 16 5 C -0.08 -1.71 7.42 22.52 0.17 -1.54 16 6 C -0.17 -5.03 4.90 -20.01 -0.10 -5.13 16 7 C 0.55 22.00 6.85 86.69 0.59 22.60 16 8 O -0.59 -30.46 16.21 -1.47 -0.02 -30.49 16 9 N -0.60 -22.59 2.97 -822.64 -2.45 -25.03 16 10 C 0.10 2.43 5.53 86.36 0.48 2.91 16 11 C -0.13 -3.24 6.08 30.67 0.19 -3.05 16 12 C -0.10 -3.49 5.11 30.62 0.16 -3.33 16 13 C 0.01 0.28 1.84 -11.46 -0.02 0.26 16 14 H 0.01 0.66 7.20 -2.38 -0.02 0.64 16 15 C -0.51 -29.14 9.15 25.60 0.23 -28.91 16 16 H 0.05 3.34 7.99 -2.91 -0.02 3.32 16 17 C 0.03 2.03 5.45 84.65 0.46 2.49 16 18 N -0.93 -59.44 13.96 21.44 0.30 -59.14 16 19 Si 0.93 51.71 24.32 68.60 1.67 53.38 16 20 H -0.29 -16.53 6.92 99.48 0.69 -15.84 16 21 H -0.29 -15.70 7.11 99.48 0.71 -14.99 16 22 H -0.27 -14.93 6.53 99.48 0.65 -14.28 16 23 C 0.11 4.98 5.10 86.36 0.44 5.42 16 24 C 0.12 3.44 6.68 22.84 0.15 3.59 16 25 O -0.51 -15.95 11.76 -87.14 -1.02 -16.97 16 26 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 27 H 0.09 0.89 8.08 -2.39 -0.02 0.87 16 28 H 0.06 1.04 7.53 -2.38 -0.02 1.02 16 29 H 0.17 0.95 8.06 -2.91 -0.02 0.93 16 30 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 31 H 0.14 2.49 7.36 -2.91 -0.02 2.46 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.11 2.22 4.73 -2.39 -0.01 2.21 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.11 1.96 8.14 -2.39 -0.02 1.95 16 36 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 37 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.27 16.10 8.31 -92.70 -0.77 15.33 16 39 H 0.04 2.41 2.35 -2.39 -0.01 2.41 16 40 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 41 H 0.40 9.59 9.06 -74.06 -0.67 8.92 16 Total: -1.00 -83.53 324.96 2.55 -80.98 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.30 Total: 7.41 kcal Atomic # 6 Polarization: -13.89 SS G_CDS: 3.77 Total: -10.12 kcal Atomic # 7 Polarization: -82.03 SS G_CDS: -2.15 Total: -84.18 kcal Atomic # 8 Polarization: -46.41 SS G_CDS: -1.05 Total: -47.46 kcal Atomic # 14 Polarization: 51.71 SS G_CDS: 1.67 Total: 53.38 kcal Total: -83.53 2.55 -80.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397789762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.820 kcal (2) G-P(sol) polarization free energy of solvation -83.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds