Wall clock time and date at job start Tue Mar 31 2020 06:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38093 * 119.95974 * 2 1 4 4 C 1.38504 * 120.39047 * 180.02562 * 3 2 1 5 5 C 1.37830 * 120.29956 * 0.02562 * 4 3 2 6 6 C 1.39664 * 119.90603 * 359.97438 * 5 4 3 7 7 C 1.47541 * 120.19059 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00375 * 145.45661 * 7 6 5 9 9 N 1.34777 * 119.99737 * 325.45551 * 7 6 5 10 10 C 1.46932 * 120.63049 * 3.59473 * 9 7 6 11 11 C 1.53198 * 108.77411 * 233.58640 * 10 9 7 12 12 C 1.53042 * 109.31172 * 305.36341 * 11 10 9 13 13 C 1.53048 * 109.53726 * 61.36637 * 12 11 10 14 14 H 1.08994 * 109.49446 * 58.61672 * 13 12 11 15 15 C 1.50705 * 109.49660 * 178.68118 * 13 12 11 16 16 H 1.07998 * 120.00044 * 5.53573 * 15 13 12 17 17 C 1.37874 * 119.99696 * 185.52961 * 15 13 12 18 18 N 1.31512 * 120.00465 * 355.62105 * 17 15 13 19 19 Si 1.86801 * 119.99514 * 175.62149 * 17 15 13 20 20 H 1.48502 * 109.47123 * 94.99880 * 19 17 15 21 21 H 1.48498 * 109.46891 * 214.99305 * 19 17 15 22 22 H 1.48491 * 109.47580 * 334.99807 * 19 17 15 23 23 C 1.46923 * 120.63112 * 183.31318 * 9 7 6 24 24 C 1.38664 * 119.95391 * 180.28304 * 2 1 3 25 25 O 1.35655 * 120.15583 * 359.97438 * 24 2 1 26 26 H 1.08996 * 109.47751 * 89.99693 * 1 2 3 27 27 H 1.09004 * 109.47407 * 210.00311 * 1 2 3 28 28 H 1.09000 * 109.46706 * 329.99628 * 1 2 3 29 29 H 1.08003 * 119.80499 * 0.02562 * 3 2 1 30 30 H 1.08003 * 119.85318 * 180.02562 * 4 3 2 31 31 H 1.08001 * 120.04317 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.58561 * 353.36821 * 10 9 7 33 33 H 1.08992 * 109.58496 * 113.65678 * 10 9 7 34 34 H 1.08999 * 109.49656 * 65.31370 * 11 10 9 35 35 H 1.08993 * 109.49581 * 185.41755 * 11 10 9 36 36 H 1.08999 * 109.46054 * 181.38629 * 12 11 10 37 37 H 1.09002 * 109.46331 * 301.35957 * 12 11 10 38 38 H 0.96991 * 120.00262 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.59216 * 246.20093 * 23 9 7 40 40 H 1.09004 * 109.58675 * 6.62630 * 23 9 7 41 41 H 0.96701 * 114.00186 * 270.21622 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1964 0.0000 4 6 3.5816 1.2068 -0.0005 5 6 4.2859 0.0221 -0.0016 6 6 3.6011 -1.1952 -0.0016 7 6 4.3487 -2.4671 -0.0033 8 8 3.9098 -3.4312 0.5936 9 7 5.5182 -2.5604 -0.6666 10 6 6.1005 -1.3838 -1.3266 11 6 6.3854 -1.7307 -2.7913 12 6 7.2614 -2.9841 -2.8535 13 6 6.5188 -4.1598 -2.2143 14 1 5.5778 -4.3243 -2.7391 15 6 7.3690 -5.4008 -2.3050 16 1 8.3761 -5.3385 -2.6900 17 6 6.8611 -6.6157 -1.8962 18 7 5.6675 -6.6785 -1.3477 19 14 7.8685 -8.1725 -2.1217 20 1 8.6148 -8.4646 -0.8714 21 1 6.9629 -9.3072 -2.4340 22 1 8.8287 -7.9835 -3.2385 23 6 6.2382 -3.8391 -0.7383 24 6 2.1993 -1.2014 -0.0059 25 8 1.5233 -2.3775 -0.0112 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6528 2.1295 0.0004 30 1 4.1122 2.1475 -0.0001 31 1 5.3659 0.0350 -0.0024 32 1 5.3973 -0.5524 -1.2781 33 1 7.0289 -1.1069 -0.8272 34 1 5.4453 -1.9178 -3.3104 35 1 6.9053 -0.8995 -3.2675 36 1 7.4860 -3.2189 -3.8939 37 1 8.1908 -2.8048 -2.3129 38 1 5.3101 -7.5332 -1.0605 39 1 7.1790 -3.7599 -0.1936 40 1 5.6261 -4.6282 -0.3015 41 1 1.3247 -2.7210 0.8706 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397789764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:31 Heat of formation + Delta-G solvation = -43.203834 kcal Electronic energy + Delta-G solvation = -23551.323861 eV Core-core repulsion = 20203.605920 eV Total energy + Delta-G solvation = -3347.717941 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49651 -38.66624 -36.82035 -36.31738 -33.69132 -32.63257 -31.64935 -30.23252 -29.59933 -27.02995 -25.21489 -25.00867 -22.77670 -22.08708 -21.44558 -19.88594 -18.70887 -17.93668 -16.75996 -16.12633 -16.01754 -15.71955 -15.17125 -14.66114 -14.35864 -14.15434 -14.01444 -13.40315 -13.32781 -13.14211 -12.80153 -12.59534 -12.41612 -12.17649 -12.09346 -11.85409 -11.75414 -11.51742 -10.98955 -10.76657 -10.55914 -10.44596 -10.28549 -10.20098 -9.83287 -9.29890 -9.08720 -8.88230 -8.70170 -8.52503 -8.43815 -7.70484 -5.97749 -4.06098 0.96049 1.19373 3.18459 3.32028 3.39660 3.42443 3.60339 3.92386 4.31120 4.45047 4.70175 4.75853 4.85051 5.09748 5.24172 5.32765 5.37335 5.44415 5.52034 5.54459 5.62521 5.70462 5.79398 5.98207 6.02361 6.19230 6.20770 6.27894 6.34125 6.38844 6.63235 6.68879 6.72041 6.87614 6.99508 7.17405 7.28808 7.65948 7.82828 7.87983 8.01531 8.25898 8.40724 8.87658 8.99330 9.59521 11.08346 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024466 B = 0.004582 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.192059 B = 6109.886875 C = 6885.313779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.124 4.124 3 C -0.092 4.092 4 C -0.137 4.137 5 C -0.095 4.095 6 C -0.144 4.144 7 C 0.552 3.448 8 O -0.530 6.530 9 N -0.597 5.597 10 C 0.077 3.923 11 C -0.134 4.134 12 C -0.111 4.111 13 C 0.040 3.960 14 H 0.032 0.968 15 C -0.522 4.522 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.879 5.879 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.116 3.884 24 C 0.159 3.841 25 O -0.481 6.481 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.126 0.874 30 H 0.128 0.872 31 H 0.147 0.853 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.263 0.737 39 H 0.043 0.957 40 H 0.117 0.883 41 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.052 17.669 3.096 18.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.125 4.125 3 C -0.110 4.110 4 C -0.155 4.155 5 C -0.113 4.113 6 C -0.148 4.148 7 C 0.339 3.661 8 O -0.408 6.408 9 N -0.329 5.329 10 C -0.046 4.046 11 C -0.172 4.172 12 C -0.148 4.148 13 C 0.021 3.979 14 H 0.050 0.950 15 C -0.561 4.561 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.516 5.516 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.004 4.004 24 C 0.113 3.887 25 O -0.292 6.292 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.144 0.856 30 H 0.146 0.854 31 H 0.164 0.836 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.061 0.939 40 H 0.135 0.865 41 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -6.374 17.027 2.888 18.409 hybrid contribution 0.619 -0.916 0.270 1.138 sum -5.755 16.111 3.157 17.397 Atomic orbital electron populations 1.20632 0.90402 1.02578 1.02608 1.20190 0.96874 0.92307 1.03110 1.21023 0.94213 0.97025 0.98772 1.21062 0.94146 0.97970 1.02312 1.21680 1.00848 0.91225 0.97592 1.20657 0.93856 0.94760 1.05542 1.17994 0.80997 0.87001 0.80089 1.90760 1.67928 1.38220 1.43897 1.48388 1.21274 1.12248 1.50996 1.22548 0.98629 0.89436 0.93952 1.21953 1.00831 0.99039 0.95393 1.21639 0.97857 0.94793 1.00558 1.19060 0.96172 0.91764 0.90913 0.95015 1.21074 1.00006 0.91719 1.43278 0.92380 1.25059 0.94998 0.99125 0.94790 1.69927 1.16423 1.25661 1.39578 0.86592 0.80011 0.83093 0.78388 1.20738 1.21160 1.19875 1.22396 0.94883 0.82360 1.00778 1.18276 0.88265 0.85557 0.96636 1.84714 1.75440 1.35267 1.33745 0.91028 0.91286 0.91674 0.85581 0.85367 0.83551 0.88443 0.91855 0.92154 0.92245 0.92992 0.93268 0.92687 0.93876 0.86485 0.74592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 9.78 36.00 0.35 -0.65 16 2 C -0.12 -1.52 5.89 -104.52 -0.62 -2.13 16 3 C -0.09 -0.95 9.68 -39.54 -0.38 -1.33 16 4 C -0.14 -1.42 10.02 -39.63 -0.40 -1.82 16 5 C -0.10 -1.23 7.43 -39.20 -0.29 -1.53 16 6 C -0.14 -2.42 5.52 -104.84 -0.58 -3.00 16 7 C 0.55 11.75 7.29 -12.47 -0.09 11.66 16 8 O -0.53 -13.23 15.35 -12.57 -0.19 -13.42 16 9 N -0.60 -12.46 2.97 -173.72 -0.52 -12.97 16 10 C 0.08 1.24 4.97 -3.70 -0.02 1.22 16 11 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 12 C -0.11 -2.25 5.11 -26.68 -0.14 -2.39 16 13 C 0.04 1.01 2.20 -91.42 -0.20 0.81 16 14 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 15 C -0.52 -14.37 8.49 -34.44 -0.29 -14.67 16 16 H 0.06 1.56 7.75 -52.49 -0.41 1.15 16 17 C 0.06 1.79 5.36 -17.82 -0.10 1.69 16 18 N -0.88 -26.14 11.66 55.43 0.65 -25.50 16 19 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.12 2.87 5.49 -3.49 -0.02 2.85 16 24 C 0.16 2.49 6.66 -38.70 -0.26 2.23 16 25 O -0.48 -7.95 11.18 -36.52 -0.41 -8.36 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.65 7.54 -51.93 -0.39 0.26 16 28 H 0.06 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 30 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 31 H 0.15 1.70 5.41 -52.49 -0.28 1.41 16 32 H 0.10 1.34 3.50 -53.26 -0.19 1.16 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.04 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.12 3.39 5.43 -51.93 -0.28 3.11 16 41 H 0.40 5.20 9.06 45.56 0.41 5.62 16 LS Contribution 328.33 15.07 4.95 4.95 Total: -1.00 -33.51 328.33 -8.65 -42.16 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -4.92 Total: 6.12 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -3.19 Total: -9.46 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.13 Total: -38.47 kcal Atomic # 8 Polarization: -21.18 SS G_CDS: -0.60 Total: -21.79 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.51 -8.65 -42.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397789764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.041 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds