Wall clock time and date at job start Tue Mar 31 2020 06:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38093 * 119.95974 * 2 1 4 4 C 1.38504 * 120.39047 * 180.02562 * 3 2 1 5 5 C 1.37830 * 120.29956 * 0.02562 * 4 3 2 6 6 C 1.39664 * 119.90603 * 359.97438 * 5 4 3 7 7 C 1.47541 * 120.19059 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00375 * 145.45661 * 7 6 5 9 9 N 1.34777 * 119.99737 * 325.45551 * 7 6 5 10 10 C 1.46932 * 120.63049 * 3.59473 * 9 7 6 11 11 C 1.53198 * 108.77411 * 233.58640 * 10 9 7 12 12 C 1.53042 * 109.31172 * 305.36341 * 11 10 9 13 13 C 1.53048 * 109.53726 * 61.36637 * 12 11 10 14 14 H 1.08994 * 109.49446 * 58.61672 * 13 12 11 15 15 C 1.50705 * 109.49660 * 178.68118 * 13 12 11 16 16 H 1.07998 * 120.00044 * 5.53573 * 15 13 12 17 17 C 1.37874 * 119.99696 * 185.52961 * 15 13 12 18 18 N 1.31512 * 120.00465 * 355.62105 * 17 15 13 19 19 Si 1.86801 * 119.99514 * 175.62149 * 17 15 13 20 20 H 1.48502 * 109.47123 * 94.99880 * 19 17 15 21 21 H 1.48498 * 109.46891 * 214.99305 * 19 17 15 22 22 H 1.48491 * 109.47580 * 334.99807 * 19 17 15 23 23 C 1.46923 * 120.63112 * 183.31318 * 9 7 6 24 24 C 1.38664 * 119.95391 * 180.28304 * 2 1 3 25 25 O 1.35655 * 120.15583 * 359.97438 * 24 2 1 26 26 H 1.08996 * 109.47751 * 89.99693 * 1 2 3 27 27 H 1.09004 * 109.47407 * 210.00311 * 1 2 3 28 28 H 1.09000 * 109.46706 * 329.99628 * 1 2 3 29 29 H 1.08003 * 119.80499 * 0.02562 * 3 2 1 30 30 H 1.08003 * 119.85318 * 180.02562 * 4 3 2 31 31 H 1.08001 * 120.04317 * 179.97438 * 5 4 3 32 32 H 1.09000 * 109.58561 * 353.36821 * 10 9 7 33 33 H 1.08992 * 109.58496 * 113.65678 * 10 9 7 34 34 H 1.08999 * 109.49656 * 65.31370 * 11 10 9 35 35 H 1.08993 * 109.49581 * 185.41755 * 11 10 9 36 36 H 1.08999 * 109.46054 * 181.38629 * 12 11 10 37 37 H 1.09002 * 109.46331 * 301.35957 * 12 11 10 38 38 H 0.96991 * 120.00262 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.59216 * 246.20093 * 23 9 7 40 40 H 1.09004 * 109.58675 * 6.62630 * 23 9 7 41 41 H 0.96701 * 114.00186 * 270.21622 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1966 1.1964 0.0000 4 6 3.5816 1.2068 -0.0005 5 6 4.2859 0.0221 -0.0016 6 6 3.6011 -1.1952 -0.0016 7 6 4.3487 -2.4671 -0.0033 8 8 3.9098 -3.4312 0.5936 9 7 5.5182 -2.5604 -0.6666 10 6 6.1005 -1.3838 -1.3266 11 6 6.3854 -1.7307 -2.7913 12 6 7.2614 -2.9841 -2.8535 13 6 6.5188 -4.1598 -2.2143 14 1 5.5778 -4.3243 -2.7391 15 6 7.3690 -5.4008 -2.3050 16 1 8.3761 -5.3385 -2.6900 17 6 6.8611 -6.6157 -1.8962 18 7 5.6675 -6.6785 -1.3477 19 14 7.8685 -8.1725 -2.1217 20 1 8.6148 -8.4646 -0.8714 21 1 6.9629 -9.3072 -2.4340 22 1 8.8287 -7.9835 -3.2385 23 6 6.2382 -3.8391 -0.7383 24 6 2.1993 -1.2014 -0.0059 25 8 1.5233 -2.3775 -0.0112 26 1 -0.3634 0.0001 -1.0276 27 1 -0.3634 -0.8900 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6528 2.1295 0.0004 30 1 4.1122 2.1475 -0.0001 31 1 5.3659 0.0350 -0.0024 32 1 5.3973 -0.5524 -1.2781 33 1 7.0289 -1.1069 -0.8272 34 1 5.4453 -1.9178 -3.3104 35 1 6.9053 -0.8995 -3.2675 36 1 7.4860 -3.2189 -3.8939 37 1 8.1908 -2.8048 -2.3129 38 1 5.3101 -7.5332 -1.0605 39 1 7.1790 -3.7599 -0.1936 40 1 5.6261 -4.6282 -0.3015 41 1 1.3247 -2.7210 0.8706 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397789764.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:30 Heat of formation + Delta-G solvation = -65.588171 kcal Electronic energy + Delta-G solvation = -23552.294519 eV Core-core repulsion = 20203.605920 eV Total energy + Delta-G solvation = -3348.688599 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.77374 -40.04744 -38.31491 -37.63983 -35.43558 -34.01242 -33.21654 -31.66057 -30.99819 -28.02600 -26.99930 -26.63887 -24.07967 -23.60743 -22.57980 -21.47297 -20.23777 -19.13459 -18.57634 -17.75230 -17.35218 -16.79106 -16.63237 -16.52226 -15.77839 -15.54300 -15.33362 -14.89813 -14.55153 -14.39465 -14.30227 -14.16355 -13.81315 -13.45268 -13.26686 -13.16697 -12.93398 -12.90819 -12.51430 -12.41563 -12.34355 -12.19173 -11.76719 -11.68257 -11.49395 -11.12558 -10.97154 -10.65632 -10.51137 -9.82670 -9.49574 -9.40165 -8.14087 -6.31357 -0.10492 0.24922 1.38603 1.39164 1.51192 1.81544 2.17922 2.40499 2.68725 3.14886 3.26739 3.52623 3.81726 4.02539 4.04634 4.11998 4.28640 4.32353 4.36721 4.53826 4.62407 4.72309 4.74648 4.75768 4.81492 4.83853 4.88645 5.05001 5.20539 5.23331 5.25168 5.26534 5.32094 5.38890 5.49268 5.52466 5.60566 5.84319 5.86773 5.94051 6.29289 6.61661 6.73186 6.82686 7.26682 7.39419 8.90715 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.024466 B = 0.004582 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.192059 B = 6109.886875 C = 6885.313779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.125 4.125 3 C -0.078 4.078 4 C -0.120 4.120 5 C -0.097 4.097 6 C -0.176 4.176 7 C 0.540 3.460 8 O -0.588 6.588 9 N -0.603 5.603 10 C 0.071 3.929 11 C -0.127 4.127 12 C -0.105 4.105 13 C 0.038 3.962 14 H -0.018 1.018 15 C -0.537 4.537 16 H 0.065 0.935 17 C 0.007 3.993 18 N -0.918 5.918 19 Si 0.961 3.039 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.260 1.260 23 C 0.129 3.871 24 C 0.127 3.873 25 O -0.506 6.506 26 H 0.073 0.927 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.169 0.831 30 H 0.174 0.826 31 H 0.162 0.838 32 H 0.130 0.870 33 H 0.091 0.909 34 H 0.041 0.959 35 H 0.109 0.891 36 H 0.052 0.948 37 H 0.062 0.938 38 H 0.259 0.741 39 H 0.042 0.958 40 H 0.067 0.933 41 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.108 22.012 2.578 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.126 4.126 3 C -0.095 4.095 4 C -0.137 4.137 5 C -0.115 4.115 6 C -0.180 4.180 7 C 0.330 3.670 8 O -0.470 6.470 9 N -0.334 5.334 10 C -0.049 4.049 11 C -0.165 4.165 12 C -0.143 4.143 13 C 0.019 3.981 14 H 0.000 1.000 15 C -0.575 4.575 16 H 0.083 0.917 17 C -0.192 4.192 18 N -0.557 5.557 19 Si 0.786 3.214 20 H -0.200 1.200 21 H -0.213 1.213 22 H -0.184 1.184 23 C 0.007 3.993 24 C 0.081 3.919 25 O -0.318 6.318 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.114 0.886 29 H 0.187 0.813 30 H 0.192 0.808 31 H 0.180 0.820 32 H 0.147 0.853 33 H 0.109 0.891 34 H 0.060 0.940 35 H 0.127 0.873 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.085 0.915 41 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -5.404 21.422 2.344 22.217 hybrid contribution 0.266 -2.167 0.444 2.227 sum -5.138 19.255 2.788 20.123 Atomic orbital electron populations 1.20703 0.88713 1.03757 1.03025 1.20500 0.98228 0.91633 1.02221 1.21586 0.94595 0.97626 0.95743 1.21563 0.94325 0.98435 0.99381 1.21856 1.01695 0.90587 0.97378 1.20443 0.94167 0.93685 1.09698 1.18876 0.80852 0.88357 0.78896 1.90705 1.69165 1.40810 1.46297 1.48415 1.21348 1.12253 1.51365 1.22985 1.00445 0.88299 0.93202 1.21933 0.99667 0.98758 0.96169 1.21529 0.98325 0.94406 1.00012 1.18988 0.94244 0.93728 0.91126 1.00016 1.21529 1.00448 0.92927 1.42596 0.91692 1.25965 0.95995 1.02784 0.94445 1.70142 1.18523 1.26043 1.40968 0.85498 0.78478 0.78638 0.78798 1.20048 1.21296 1.18368 1.21796 0.94071 0.83553 0.99920 1.18702 0.88282 0.86311 0.98587 1.84671 1.75761 1.36709 1.34663 0.90877 0.92077 0.88600 0.81324 0.80837 0.82045 0.85314 0.89081 0.94042 0.87290 0.92970 0.91965 0.93174 0.93955 0.91503 0.74023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 9.78 71.24 0.70 -1.08 16 2 C -0.13 -2.78 5.89 -19.80 -0.12 -2.89 16 3 C -0.08 -1.20 9.68 22.30 0.22 -0.98 16 4 C -0.12 -1.82 10.02 22.24 0.22 -1.60 16 5 C -0.10 -2.22 7.43 22.52 0.17 -2.06 16 6 C -0.18 -5.95 5.52 -20.01 -0.11 -6.06 16 7 C 0.54 24.38 7.29 86.70 0.63 25.01 16 8 O -0.59 -32.18 15.35 13.08 0.20 -31.98 16 9 N -0.60 -26.04 2.97 -821.80 -2.44 -28.48 16 10 C 0.07 2.15 4.97 86.36 0.43 2.58 16 11 C -0.13 -4.01 6.08 30.67 0.19 -3.82 16 12 C -0.11 -4.22 5.11 30.62 0.16 -4.06 16 13 C 0.04 2.04 2.20 -11.31 -0.02 2.01 16 14 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 15 C -0.54 -30.55 8.49 25.60 0.22 -30.34 16 16 H 0.06 3.52 7.75 -2.91 -0.02 3.49 16 17 C 0.01 0.43 5.36 84.65 0.45 0.88 16 18 N -0.92 -58.30 11.66 21.45 0.25 -58.05 16 19 Si 0.96 45.48 29.54 68.60 2.03 47.51 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 23 C 0.13 6.78 5.49 86.51 0.47 7.25 16 24 C 0.13 4.04 6.66 22.84 0.15 4.19 16 25 O -0.51 -18.17 11.18 -72.63 -0.81 -18.98 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.06 1.12 7.54 -2.38 -0.02 1.10 16 28 H 0.10 1.02 8.08 -2.39 -0.02 1.00 16 29 H 0.17 1.25 8.06 -2.91 -0.02 1.23 16 30 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 31 H 0.16 3.11 5.41 -2.91 -0.02 3.09 16 32 H 0.13 3.13 3.50 -3.64 -0.01 3.11 16 33 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 38 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 39 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 40 H 0.07 4.22 5.43 -2.38 -0.01 4.21 16 41 H 0.40 12.06 9.06 -74.06 -0.67 11.39 16 Total: -1.00 -82.47 328.33 3.36 -79.12 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: 0.38 Total: 21.82 kcal Atomic # 6 Polarization: -14.71 SS G_CDS: 3.75 Total: -10.96 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -2.19 Total: -86.52 kcal Atomic # 8 Polarization: -50.35 SS G_CDS: -0.61 Total: -50.96 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -82.47 3.36 -79.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397789764.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.529 kcal (2) G-P(sol) polarization free energy of solvation -82.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds