Wall clock time and date at job start Tue Mar 31 2020 07:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50691 * 110.29095 * 2 1 4 4 O 1.20823 * 120.00283 * 120.42399 * 3 2 1 5 5 O 1.34230 * 120.00126 * 300.70379 * 3 2 1 6 6 C 1.54260 * 110.32383 * 237.87215 * 2 1 3 7 7 C 1.54614 * 104.94950 * 240.98210 * 6 2 1 8 8 N 1.48566 * 104.59645 * 23.92618 * 7 6 2 9 9 C 1.46898 * 110.99965 * 200.90517 * 8 7 6 10 10 C 1.50697 * 109.47287 * 285.42174 * 9 8 7 11 11 C 1.38635 * 119.74545 * 269.73035 * 10 9 8 12 12 C 1.37620 * 120.24436 * 179.72562 * 11 10 9 13 13 C 1.40713 * 119.74632 * 0.56543 * 12 11 10 14 14 C 1.41394 * 120.24724 * 179.68770 * 13 12 11 15 15 H 1.07990 * 120.00016 * 24.40783 * 14 13 12 16 16 C 1.39948 * 119.99696 * 204.41003 * 14 13 12 17 17 N 1.30820 * 120.00222 * 17.85458 * 16 14 13 18 18 Si 1.86804 * 119.99763 * 197.85087 * 16 14 13 19 19 H 1.48506 * 109.46836 * 90.00214 * 18 16 14 20 20 H 1.48495 * 109.47382 * 210.00044 * 18 16 14 21 21 H 1.48503 * 109.47094 * 330.00417 * 18 16 14 22 22 C 1.40722 * 119.51160 * 359.70344 * 13 12 11 23 23 C 1.37623 * 119.74112 * 0.02562 * 22 13 12 24 24 C 1.48559 * 104.22324 * 320.46816 * 8 7 6 25 25 H 1.09004 * 109.46692 * 59.29831 * 1 2 3 26 26 H 1.08996 * 109.47226 * 179.30070 * 1 2 3 27 27 H 1.08995 * 109.47128 * 299.30349 * 1 2 3 28 28 H 0.96704 * 117.00405 * 179.72850 * 5 3 2 29 29 H 1.09006 * 110.32033 * 359.89844 * 6 2 1 30 30 H 1.08991 * 110.32779 * 122.10673 * 6 2 1 31 31 H 1.08995 * 110.45360 * 265.12945 * 7 6 2 32 32 H 1.08994 * 110.46588 * 142.73254 * 7 6 2 33 33 H 1.09000 * 109.47016 * 45.42825 * 9 8 7 34 34 H 1.09001 * 109.46707 * 165.41538 * 9 8 7 35 35 H 1.08003 * 119.88101 * 359.97438 * 11 10 9 36 36 H 1.08004 * 120.12864 * 180.27578 * 12 11 10 37 37 H 0.97000 * 119.99671 * 179.97438 * 17 16 14 38 38 H 1.07993 * 120.13015 * 179.97438 * 22 13 12 39 39 H 1.08001 * 119.87411 * 179.97438 * 23 22 13 40 40 H 1.09004 * 110.40943 * 280.70651 * 24 8 7 41 41 H 1.08995 * 110.41478 * 158.26399 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0526 1.4134 0.0000 4 8 2.7591 1.7963 0.9022 5 8 1.7287 2.2488 -0.9995 6 6 2.0658 -0.7693 -1.2250 7 6 2.8839 -1.9406 -0.6340 8 7 2.3170 -2.1454 0.7240 9 6 3.2674 -2.8567 1.5893 10 6 3.3106 -4.3115 1.1990 11 6 2.4479 -5.2121 1.8046 12 6 2.4747 -6.5421 1.4518 13 6 3.3903 -6.9886 0.4812 14 6 3.4315 -8.3538 0.1155 15 1 2.5589 -8.9755 0.2506 16 6 4.6031 -8.8994 -0.4213 17 7 5.7438 -8.2772 -0.2695 18 14 4.5381 -10.5162 -1.3548 19 1 4.2991 -10.2467 -2.7955 20 1 5.8282 -11.2335 -1.1928 21 1 3.4353 -11.3536 -0.8182 22 6 4.2651 -6.0665 -0.1228 23 6 4.2168 -4.7402 0.2415 24 6 2.0661 -0.7700 1.2260 25 1 -0.3633 0.5247 -0.8837 26 1 -0.3633 -1.0275 -0.0125 27 1 -0.3633 0.5030 0.8961 28 1 2.0845 3.1468 -0.9539 29 1 1.2387 -1.1484 -1.8254 30 1 2.7067 -0.1246 -1.8264 31 1 3.9387 -1.6740 -0.5692 32 1 2.7558 -2.8383 -1.2387 33 1 4.2596 -2.4201 1.4752 34 1 2.9491 -2.7683 2.6281 35 1 1.7495 -4.8680 2.5531 36 1 1.7987 -7.2412 1.9216 37 1 6.5559 -8.6556 -0.6413 38 1 4.9721 -6.3984 -0.8686 39 1 4.8874 -4.0307 -0.2204 40 1 2.9931 -0.3201 1.5818 41 1 1.3206 -0.7855 2.0210 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399064655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:49 Heat of formation + Delta-G solvation = -76.032324 kcal Electronic energy + Delta-G solvation = -22612.908933 eV Core-core repulsion = 19263.767442 eV Total energy + Delta-G solvation = -3349.141491 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.92515 -38.71660 -37.34455 -36.30173 -34.28436 -33.08456 -30.33772 -29.58729 -29.10601 -26.95713 -25.75991 -24.10303 -23.08857 -21.41179 -20.70469 -19.84197 -19.70013 -18.01633 -17.26801 -16.79836 -16.10586 -15.29590 -15.20034 -14.78862 -14.27071 -14.13008 -13.85289 -13.61258 -13.32372 -13.20174 -12.58221 -12.52353 -12.19345 -12.02052 -11.91243 -11.76345 -11.51403 -11.38505 -11.28341 -11.13351 -10.99347 -10.85208 -10.74647 -10.48788 -10.41437 -10.32353 -9.54900 -9.35293 -9.11315 -8.17731 -7.41384 -7.26893 -6.74774 -4.32781 1.99972 2.69968 2.82177 3.07425 3.11285 3.11698 3.20462 3.94069 4.23435 4.38318 4.52240 4.68957 4.78674 5.11264 5.27288 5.30765 5.43596 5.65222 5.69941 5.71206 5.75710 5.78925 5.87391 5.96429 6.07333 6.09949 6.20609 6.26786 6.29841 6.40332 6.43246 6.95224 7.06891 7.10596 7.29717 7.35994 7.41286 7.64637 7.67798 7.91037 8.08213 8.16851 8.33114 8.66642 8.92129 9.00597 10.19802 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034238 B = 0.003133 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.613985 B = 8933.980074 C = 9085.766512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.057 4.057 3 C 0.490 3.510 4 O -0.515 6.515 5 O -0.513 6.513 6 C -0.109 4.109 7 C 0.036 3.964 8 N -0.497 5.497 9 C 0.109 3.891 10 C -0.205 4.205 11 C -0.069 4.069 12 C -0.228 4.228 13 C 0.112 3.888 14 C -0.463 4.463 15 H 0.077 0.923 16 C 0.076 3.924 17 N -0.794 5.794 18 Si 0.907 3.093 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.262 1.262 22 C -0.166 4.166 23 C -0.093 4.093 24 C 0.042 3.958 25 H 0.066 0.934 26 H 0.083 0.917 27 H 0.057 0.943 28 H 0.407 0.593 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.041 0.959 32 H 0.093 0.907 33 H 0.029 0.971 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.280 0.720 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.076 15.089 -2.554 16.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.059 4.059 3 C 0.332 3.668 4 O -0.402 6.402 5 O -0.324 6.324 6 C -0.147 4.147 7 C -0.092 4.092 8 N -0.221 5.221 9 C -0.017 4.017 10 C -0.207 4.207 11 C -0.088 4.088 12 C -0.248 4.248 13 C 0.110 3.890 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.419 5.419 18 Si 0.732 3.268 19 H -0.193 1.193 20 H -0.204 1.204 21 H -0.186 1.186 22 C -0.185 4.185 23 C -0.112 4.112 24 C -0.086 4.086 25 H 0.085 0.915 26 H 0.102 0.898 27 H 0.077 0.923 28 H 0.265 0.735 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.059 0.941 32 H 0.111 0.889 33 H 0.047 0.953 34 H 0.085 0.915 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.134 0.866 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.258 14.434 -2.354 15.908 hybrid contribution 1.202 0.394 -0.298 1.300 sum -5.055 14.828 -2.652 15.889 Atomic orbital electron populations 1.21828 0.90619 1.04155 1.02255 1.21258 0.98481 0.86923 0.99197 1.23496 0.76793 0.88277 0.78241 1.90707 1.35749 1.77271 1.36511 1.84551 1.71694 1.27325 1.48875 1.22493 1.00660 0.96326 0.95257 1.23170 0.96075 0.98207 0.91792 1.65602 1.42283 1.12093 1.02112 1.20904 0.92299 0.92870 0.95642 1.18771 1.03752 0.92269 1.05902 1.20314 0.96887 0.93301 0.98315 1.20957 1.05855 0.94816 1.03123 1.17617 0.89888 0.93120 0.88387 1.19605 0.98068 0.95096 1.36547 0.90499 1.25904 0.94781 0.99233 0.94218 1.69832 0.99106 1.38566 1.34431 0.86335 0.78541 0.81449 0.80515 1.19298 1.20385 1.18633 1.21272 1.03094 0.91411 1.02758 1.20497 0.97582 0.95617 0.97485 1.23179 1.01080 0.89462 0.94868 0.91521 0.89776 0.92346 0.73452 0.89348 0.91103 0.94055 0.88885 0.95294 0.91544 0.89537 0.89156 0.90952 0.86610 0.90037 0.92288 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 8.16 37.16 0.30 -0.96 16 2 C -0.06 -0.66 0.96 -154.28 -0.15 -0.81 16 3 C 0.49 5.68 6.75 36.00 0.24 5.93 16 4 O -0.51 -7.48 16.20 -18.75 -0.30 -7.78 16 5 O -0.51 -4.39 13.34 -39.26 -0.52 -4.91 16 6 C -0.11 -1.27 6.29 -25.22 -0.16 -1.43 16 7 C 0.04 0.52 5.70 -2.05 -0.01 0.51 16 8 N -0.50 -7.85 5.33 -231.26 -1.23 -9.08 16 9 C 0.11 1.94 4.97 -4.98 -0.02 1.92 16 10 C -0.21 -4.40 5.22 -104.33 -0.54 -4.94 16 11 C -0.07 -1.55 9.67 -39.66 -0.38 -1.93 16 12 C -0.23 -5.60 9.80 -38.87 -0.38 -5.99 16 13 C 0.11 2.99 5.58 -106.82 -0.60 2.39 16 14 C -0.46 -12.31 9.05 -37.74 -0.34 -12.66 16 15 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 16 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 17 N -0.79 -20.52 10.95 55.55 0.61 -19.92 16 18 Si 0.91 18.66 29.60 -169.99 -5.03 13.63 16 19 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 20 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 22 C -0.17 -4.27 8.70 -38.87 -0.34 -4.61 16 23 C -0.09 -2.12 8.88 -39.66 -0.35 -2.48 16 24 C 0.04 0.57 5.33 -2.18 -0.01 0.56 16 25 H 0.07 0.57 8.13 -51.93 -0.42 0.14 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.41 1.74 9.10 45.56 0.41 2.16 16 29 H 0.09 0.94 7.71 -51.93 -0.40 0.54 16 30 H 0.07 0.76 7.70 -51.93 -0.40 0.36 16 31 H 0.04 0.62 7.75 -51.93 -0.40 0.21 16 32 H 0.09 1.50 7.88 -51.93 -0.41 1.09 16 33 H 0.03 0.51 7.71 -51.93 -0.40 0.11 16 34 H 0.07 1.12 8.02 -51.93 -0.42 0.70 16 35 H 0.09 1.74 8.06 -52.48 -0.42 1.31 16 36 H 0.09 2.11 8.06 -52.48 -0.42 1.69 16 37 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 38 H 0.12 3.09 6.15 -52.49 -0.32 2.77 16 39 H 0.08 1.71 8.06 -52.49 -0.42 1.28 16 40 H 0.06 0.87 6.77 -51.93 -0.35 0.52 16 41 H 0.09 1.11 7.86 -51.93 -0.41 0.70 16 LS Contribution 338.40 15.07 5.10 5.10 Total: -1.00 -29.49 338.40 -9.40 -38.89 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.18 Total: 6.74 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -2.83 Total: -22.67 kcal Atomic # 7 Polarization: -28.38 SS G_CDS: -0.62 Total: -29.00 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: -0.83 Total: -12.69 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.49 -9.40 -38.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399064655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.144 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds