Wall clock time and date at job start Tue Mar 31 2020 07:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50691 * 110.29095 * 2 1 4 4 O 1.20823 * 120.00283 * 120.42399 * 3 2 1 5 5 O 1.34230 * 120.00126 * 300.70379 * 3 2 1 6 6 C 1.54260 * 110.32383 * 237.87215 * 2 1 3 7 7 C 1.54614 * 104.94950 * 240.98210 * 6 2 1 8 8 N 1.48566 * 104.59645 * 23.92618 * 7 6 2 9 9 C 1.46898 * 110.99965 * 200.90517 * 8 7 6 10 10 C 1.50697 * 109.47287 * 285.42174 * 9 8 7 11 11 C 1.38635 * 119.74545 * 269.73035 * 10 9 8 12 12 C 1.37620 * 120.24436 * 179.72562 * 11 10 9 13 13 C 1.40713 * 119.74632 * 0.56543 * 12 11 10 14 14 C 1.41394 * 120.24724 * 179.68770 * 13 12 11 15 15 H 1.07990 * 120.00016 * 24.40783 * 14 13 12 16 16 C 1.39948 * 119.99696 * 204.41003 * 14 13 12 17 17 N 1.30820 * 120.00222 * 17.85458 * 16 14 13 18 18 Si 1.86804 * 119.99763 * 197.85087 * 16 14 13 19 19 H 1.48506 * 109.46836 * 90.00214 * 18 16 14 20 20 H 1.48495 * 109.47382 * 210.00044 * 18 16 14 21 21 H 1.48503 * 109.47094 * 330.00417 * 18 16 14 22 22 C 1.40722 * 119.51160 * 359.70344 * 13 12 11 23 23 C 1.37623 * 119.74112 * 0.02562 * 22 13 12 24 24 C 1.48559 * 104.22324 * 320.46816 * 8 7 6 25 25 H 1.09004 * 109.46692 * 59.29831 * 1 2 3 26 26 H 1.08996 * 109.47226 * 179.30070 * 1 2 3 27 27 H 1.08995 * 109.47128 * 299.30349 * 1 2 3 28 28 H 0.96704 * 117.00405 * 179.72850 * 5 3 2 29 29 H 1.09006 * 110.32033 * 359.89844 * 6 2 1 30 30 H 1.08991 * 110.32779 * 122.10673 * 6 2 1 31 31 H 1.08995 * 110.45360 * 265.12945 * 7 6 2 32 32 H 1.08994 * 110.46588 * 142.73254 * 7 6 2 33 33 H 1.09000 * 109.47016 * 45.42825 * 9 8 7 34 34 H 1.09001 * 109.46707 * 165.41538 * 9 8 7 35 35 H 1.08003 * 119.88101 * 359.97438 * 11 10 9 36 36 H 1.08004 * 120.12864 * 180.27578 * 12 11 10 37 37 H 0.97000 * 119.99671 * 179.97438 * 17 16 14 38 38 H 1.07993 * 120.13015 * 179.97438 * 22 13 12 39 39 H 1.08001 * 119.87411 * 179.97438 * 23 22 13 40 40 H 1.09004 * 110.40943 * 280.70651 * 24 8 7 41 41 H 1.08995 * 110.41478 * 158.26399 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0526 1.4134 0.0000 4 8 2.7591 1.7963 0.9022 5 8 1.7287 2.2488 -0.9995 6 6 2.0658 -0.7693 -1.2250 7 6 2.8839 -1.9406 -0.6340 8 7 2.3170 -2.1454 0.7240 9 6 3.2674 -2.8567 1.5893 10 6 3.3106 -4.3115 1.1990 11 6 2.4479 -5.2121 1.8046 12 6 2.4747 -6.5421 1.4518 13 6 3.3903 -6.9886 0.4812 14 6 3.4315 -8.3538 0.1155 15 1 2.5589 -8.9755 0.2506 16 6 4.6031 -8.8994 -0.4213 17 7 5.7438 -8.2772 -0.2695 18 14 4.5381 -10.5162 -1.3548 19 1 4.2991 -10.2467 -2.7955 20 1 5.8282 -11.2335 -1.1928 21 1 3.4353 -11.3536 -0.8182 22 6 4.2651 -6.0665 -0.1228 23 6 4.2168 -4.7402 0.2415 24 6 2.0661 -0.7700 1.2260 25 1 -0.3633 0.5247 -0.8837 26 1 -0.3633 -1.0275 -0.0125 27 1 -0.3633 0.5030 0.8961 28 1 2.0845 3.1468 -0.9539 29 1 1.2387 -1.1484 -1.8254 30 1 2.7067 -0.1246 -1.8264 31 1 3.9387 -1.6740 -0.5692 32 1 2.7558 -2.8383 -1.2387 33 1 4.2596 -2.4201 1.4752 34 1 2.9491 -2.7683 2.6281 35 1 1.7495 -4.8680 2.5531 36 1 1.7987 -7.2412 1.9216 37 1 6.5559 -8.6556 -0.6413 38 1 4.9721 -6.3984 -0.8686 39 1 4.8874 -4.0307 -0.2204 40 1 2.9931 -0.3201 1.5818 41 1 1.3206 -0.7855 2.0210 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399064655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:48 Heat of formation + Delta-G solvation = -94.061823 kcal Electronic energy + Delta-G solvation = -22613.690751 eV Core-core repulsion = 19263.767442 eV Total energy + Delta-G solvation = -3349.923309 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.85386 -39.98392 -38.96025 -37.14393 -35.91018 -34.52644 -31.90109 -31.20877 -30.57252 -28.46787 -26.83007 -25.49315 -24.28049 -23.01522 -22.29236 -21.44652 -20.67673 -19.18894 -18.86526 -17.82336 -17.12695 -17.08465 -16.37943 -15.94814 -15.72769 -15.68962 -15.32138 -14.89306 -14.49680 -14.31101 -14.17540 -13.78675 -13.73411 -13.43178 -13.11443 -13.05272 -12.86945 -12.67146 -12.60148 -12.45851 -12.32354 -12.20880 -12.12085 -11.91766 -11.75833 -11.36721 -11.32465 -11.20883 -10.98108 -9.49343 -9.28475 -9.14691 -8.61821 -6.30536 0.96451 1.11944 1.19758 1.38594 1.51683 1.52140 1.98706 2.21937 2.70951 3.22132 3.32528 3.55206 3.81973 3.87007 4.20193 4.23705 4.29673 4.34661 4.38611 4.54491 4.62247 4.68913 4.71088 4.79876 4.83143 4.86538 4.98652 5.04459 5.07676 5.11766 5.18903 5.31888 5.40191 5.50923 5.54697 5.73861 5.85847 5.96998 6.09495 6.14299 6.30991 6.43081 6.73787 6.94672 6.97582 7.07685 8.35176 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.034238 B = 0.003133 C = 0.003081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.613985 B = 8933.980074 C = 9085.766512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.056 4.056 3 C 0.498 3.502 4 O -0.549 6.549 5 O -0.503 6.503 6 C -0.101 4.101 7 C 0.032 3.968 8 N -0.504 5.504 9 C 0.114 3.886 10 C -0.191 4.191 11 C -0.072 4.072 12 C -0.243 4.243 13 C 0.080 3.920 14 C -0.503 4.503 15 H 0.073 0.927 16 C 0.035 3.965 17 N -0.827 5.827 18 Si 0.981 3.019 19 H -0.262 1.262 20 H -0.268 1.268 21 H -0.259 1.259 22 C -0.189 4.189 23 C -0.094 4.094 24 C 0.044 3.956 25 H 0.081 0.919 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.428 0.572 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.036 0.964 32 H 0.074 0.926 33 H 0.030 0.970 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.094 0.906 37 H 0.287 0.713 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.047 0.953 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.142 16.606 -3.028 18.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.057 4.057 3 C 0.341 3.659 4 O -0.439 6.439 5 O -0.316 6.316 6 C -0.139 4.139 7 C -0.096 4.096 8 N -0.228 5.228 9 C -0.013 4.013 10 C -0.193 4.193 11 C -0.090 4.090 12 C -0.263 4.263 13 C 0.078 3.922 14 C -0.532 4.532 15 H 0.091 0.909 16 C -0.179 4.179 17 N -0.453 5.453 18 Si 0.802 3.198 19 H -0.187 1.187 20 H -0.193 1.193 21 H -0.183 1.183 22 C -0.209 4.209 23 C -0.112 4.112 24 C -0.084 4.084 25 H 0.100 0.900 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.290 0.710 29 H 0.119 0.881 30 H 0.101 0.899 31 H 0.054 0.946 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.098 0.902 35 H 0.132 0.868 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -7.338 15.988 -2.840 17.819 hybrid contribution 1.506 0.117 -0.117 1.515 sum -5.831 16.106 -2.957 17.382 Atomic orbital electron populations 1.21814 0.88907 1.04192 1.03464 1.21216 0.99739 0.86914 0.97870 1.23362 0.75953 0.88443 0.78094 1.90708 1.37314 1.77937 1.37952 1.84492 1.71227 1.28537 1.47328 1.22454 1.00804 0.95233 0.95401 1.23170 0.96444 0.98751 0.91268 1.65482 1.41411 1.13622 1.02291 1.20809 0.93195 0.90566 0.96728 1.19168 1.01826 0.94392 1.03899 1.20623 0.97300 0.92508 0.98602 1.21159 1.05858 0.96144 1.03113 1.17951 0.91049 0.93718 0.89506 1.19832 0.98835 0.95555 1.39007 0.90883 1.26740 0.93889 1.02888 0.94406 1.69885 0.99804 1.40432 1.35202 0.85221 0.78844 0.76797 0.78932 1.18678 1.19298 1.18259 1.21227 1.03556 0.92676 1.03391 1.20691 0.98049 0.94826 0.97684 1.23173 1.00934 0.88134 0.96129 0.89964 0.90305 0.91551 0.71037 0.88092 0.89878 0.94575 0.90797 0.95134 0.90202 0.86795 0.88754 0.90262 0.88427 0.88452 0.93503 0.88507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.05 8.16 71.98 0.59 -1.46 16 2 C -0.06 -1.14 0.96 -52.03 -0.05 -1.19 16 3 C 0.50 10.25 6.75 71.23 0.48 10.73 16 4 O -0.55 -14.94 16.20 21.97 0.36 -14.58 16 5 O -0.50 -6.90 13.34 -51.42 -0.69 -7.58 16 6 C -0.10 -2.11 6.29 31.57 0.20 -1.91 16 7 C 0.03 0.89 5.70 86.53 0.49 1.39 16 8 N -0.50 -15.09 5.33 -885.56 -4.72 -19.81 16 9 C 0.11 3.87 4.97 85.56 0.43 4.30 16 10 C -0.19 -8.06 5.22 -19.68 -0.10 -8.17 16 11 C -0.07 -3.16 9.67 22.22 0.21 -2.94 16 12 C -0.24 -12.17 9.80 22.73 0.22 -11.94 16 13 C 0.08 4.41 5.58 -21.29 -0.12 4.29 16 14 C -0.50 -27.72 9.05 23.46 0.21 -27.51 16 15 H 0.07 3.91 7.91 -2.92 -0.02 3.88 16 16 C 0.04 1.81 5.14 85.26 0.44 2.25 16 17 N -0.83 -44.06 10.95 21.83 0.24 -43.82 16 18 Si 0.98 38.83 29.60 68.60 2.03 40.87 16 19 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 20 H -0.27 -10.07 7.11 99.48 0.71 -9.37 16 21 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 22 C -0.19 -10.08 8.70 22.73 0.20 -9.88 16 23 C -0.09 -4.33 8.88 22.22 0.20 -4.14 16 24 C 0.04 1.11 5.33 86.45 0.46 1.57 16 25 H 0.08 1.09 8.13 -2.38 -0.02 1.07 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.43 2.23 9.10 -74.05 -0.67 1.56 16 29 H 0.10 1.88 7.71 -2.38 -0.02 1.86 16 30 H 0.08 1.55 7.70 -2.39 -0.02 1.53 16 31 H 0.04 1.05 7.75 -2.39 -0.02 1.03 16 32 H 0.07 2.36 7.88 -2.39 -0.02 2.34 16 33 H 0.03 1.03 7.71 -2.39 -0.02 1.01 16 34 H 0.08 2.50 8.02 -2.39 -0.02 2.48 16 35 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 36 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.29 13.80 8.30 -92.71 -0.77 13.04 16 38 H 0.10 5.48 6.15 -2.91 -0.02 5.46 16 39 H 0.10 4.10 8.06 -2.91 -0.02 4.07 16 40 H 0.05 1.32 6.77 -2.38 -0.02 1.30 16 41 H 0.10 2.24 7.86 -2.39 -0.02 2.22 16 Total: -1.00 -64.99 338.40 1.44 -63.55 By element: Atomic # 1 Polarization: 25.64 SS G_CDS: 0.36 Total: 26.00 kcal Atomic # 6 Polarization: -48.48 SS G_CDS: 3.86 Total: -44.62 kcal Atomic # 7 Polarization: -59.15 SS G_CDS: -4.48 Total: -63.63 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.33 Total: -22.16 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 2.03 Total: 40.87 kcal Total: -64.99 1.44 -63.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399064655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.514 kcal (2) G-P(sol) polarization free energy of solvation -64.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds