Wall clock time and date at job start Tue Mar 31 2020 07:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 110.27335 * 2 1 4 4 O 1.20827 * 119.99709 * 237.91020 * 3 2 1 5 5 O 1.34225 * 120.00035 * 57.91203 * 3 2 1 6 6 C 1.54596 * 110.30840 * 122.19348 * 2 1 3 7 7 C 1.54942 * 102.92043 * 96.95621 * 6 2 1 8 8 N 1.48531 * 103.22725 * 37.41735 * 7 6 2 9 9 C 1.46901 * 110.99948 * 200.27853 * 8 7 6 10 10 C 1.50701 * 109.46990 * 287.39170 * 9 8 7 11 11 C 1.38635 * 119.74938 * 270.25654 * 10 9 8 12 12 C 1.37619 * 120.24352 * 180.25874 * 11 10 9 13 13 C 1.40711 * 119.74798 * 359.46791 * 12 11 10 14 14 C 1.41396 * 120.24787 * 180.29782 * 13 12 11 15 15 H 1.08005 * 119.99505 * 335.28837 * 14 13 12 16 16 C 1.39942 * 120.00083 * 155.28075 * 14 13 12 17 17 N 1.30817 * 120.00502 * 342.23482 * 16 14 13 18 18 Si 1.86807 * 119.99811 * 162.22853 * 16 14 13 19 19 H 1.48505 * 109.46906 * 94.66663 * 18 16 14 20 20 H 1.48499 * 109.47220 * 214.66572 * 18 16 14 21 21 H 1.48500 * 109.47278 * 334.66810 * 18 16 14 22 22 C 1.40719 * 119.50966 * 0.27391 * 13 12 11 23 23 C 1.37612 * 119.74521 * 0.02562 * 22 13 12 24 24 C 1.47905 * 105.81783 * 320.79196 * 8 7 6 25 25 H 1.09000 * 109.46902 * 182.09060 * 1 2 3 26 26 H 1.09000 * 109.47040 * 302.08992 * 1 2 3 27 27 H 1.09001 * 109.46823 * 62.09184 * 1 2 3 28 28 H 0.96699 * 116.99914 * 179.97438 * 5 3 2 29 29 H 1.08995 * 110.72513 * 215.31458 * 6 2 1 30 30 H 1.09000 * 110.72293 * 338.42542 * 6 2 1 31 31 H 1.08998 * 110.66654 * 278.97744 * 7 6 2 32 32 H 1.09004 * 110.66502 * 155.84886 * 7 6 2 33 33 H 1.09003 * 109.46692 * 167.39476 * 9 8 7 34 34 H 1.08997 * 109.47290 * 47.39707 * 9 8 7 35 35 H 1.07995 * 119.87697 * 0.02562 * 11 10 9 36 36 H 1.07999 * 120.12174 * 179.73950 * 12 11 10 37 37 H 0.97001 * 120.00527 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.12678 * 180.02562 * 22 13 12 39 39 H 1.08006 * 119.87565 * 179.97438 * 23 22 13 40 40 H 1.08999 * 109.91721 * 144.68430 * 24 8 7 41 41 H 1.09009 * 109.91412 * 265.77967 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0522 1.4136 0.0000 4 8 2.7830 1.7877 -0.8865 5 8 1.7055 2.2572 0.9848 6 6 2.0666 -0.7725 1.2270 7 6 2.3584 -2.1803 0.6495 8 7 2.8810 -1.8885 -0.7099 9 6 2.7668 -3.0654 -1.5816 10 6 3.7893 -4.0943 -1.1729 11 6 5.0524 -4.0736 -1.7440 12 6 5.9922 -5.0115 -1.3822 13 6 5.6707 -5.9871 -0.4205 14 6 6.6303 -6.9519 -0.0363 15 1 7.4319 -7.2145 -0.7108 16 6 6.5414 -7.5663 1.2179 17 7 5.8114 -7.0273 2.1602 18 14 7.4652 -9.1563 1.5466 19 1 8.7738 -8.8473 2.1769 20 1 6.6664 -10.0134 2.4590 21 1 7.6899 -9.8723 0.2651 22 6 4.3873 -5.9951 0.1565 23 6 3.4613 -5.0513 -0.2250 24 6 2.0646 -0.7673 -1.2235 25 1 -0.3633 -1.0270 0.0375 26 1 -0.3633 0.5459 0.8707 27 1 -0.3633 0.4810 -0.9082 28 1 2.0657 3.1536 0.9422 29 1 2.9806 -0.3127 1.6027 30 1 1.3114 -0.8232 2.0112 31 1 1.4433 -2.7696 0.5916 32 1 3.1105 -2.6936 1.2488 33 1 2.9423 -2.7697 -2.6160 34 1 1.7672 -3.4901 -1.4897 35 1 5.2985 -3.3209 -2.4784 36 1 6.9742 -4.9961 -1.8315 37 1 5.7495 -7.4534 3.0294 38 1 4.1300 -6.7391 0.8959 39 1 2.4755 -5.0558 0.2162 40 1 2.6813 -0.1083 -1.8346 41 1 1.2344 -1.1531 -1.8153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399064664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:52 Heat of formation + Delta-G solvation = -74.856316 kcal Electronic energy + Delta-G solvation = -22688.232797 eV Core-core repulsion = 19339.142301 eV Total energy + Delta-G solvation = -3349.090496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.86563 -38.72499 -37.33664 -36.21966 -34.26454 -33.06180 -30.30257 -29.55962 -29.08637 -27.03193 -25.78957 -24.06687 -23.05808 -21.36416 -20.66349 -19.84515 -19.60753 -17.98058 -17.26222 -16.98629 -15.83676 -15.34625 -15.19626 -14.84258 -14.28914 -14.09351 -13.85760 -13.66596 -13.04848 -12.90584 -12.75279 -12.55111 -12.18837 -12.11490 -11.92575 -11.65636 -11.64098 -11.46846 -11.17316 -11.11300 -10.95264 -10.88945 -10.75894 -10.48552 -10.36885 -10.27015 -9.54036 -9.35067 -9.10206 -8.04341 -7.40393 -7.25195 -6.73895 -4.31785 2.09973 2.75445 2.86187 3.07799 3.11228 3.12966 3.20454 3.94734 4.24871 4.30099 4.55349 4.66648 4.84666 5.12045 5.19423 5.33631 5.40355 5.58625 5.62836 5.70303 5.77174 5.79195 5.85367 5.94530 6.09976 6.12078 6.24709 6.31968 6.36610 6.41084 6.46255 6.97274 7.09995 7.17596 7.34100 7.40015 7.42859 7.65705 7.76886 7.92197 8.08762 8.17653 8.34194 8.67277 8.92957 9.01416 10.20680 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030008 B = 0.003293 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.852408 B = 8501.387786 C = 8743.272935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 C 0.493 3.507 4 O -0.508 6.508 5 O -0.515 6.515 6 C -0.107 4.107 7 C 0.041 3.959 8 N -0.506 5.506 9 C 0.112 3.888 10 C -0.207 4.207 11 C -0.069 4.069 12 C -0.228 4.228 13 C 0.113 3.887 14 C -0.464 4.464 15 H 0.076 0.924 16 C 0.077 3.923 17 N -0.793 5.793 18 Si 0.905 3.095 19 H -0.271 1.271 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.166 4.166 23 C -0.093 4.093 24 C 0.041 3.959 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.061 0.939 28 H 0.407 0.593 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.044 0.956 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.028 0.972 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.279 0.721 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.768 11.474 -0.106 15.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.065 4.065 3 C 0.335 3.665 4 O -0.395 6.395 5 O -0.326 6.326 6 C -0.145 4.145 7 C -0.086 4.086 8 N -0.230 5.230 9 C -0.015 4.015 10 C -0.208 4.208 11 C -0.088 4.088 12 C -0.247 4.247 13 C 0.110 3.890 14 C -0.493 4.493 15 H 0.095 0.905 16 C -0.141 4.141 17 N -0.419 5.419 18 Si 0.730 3.270 19 H -0.196 1.196 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.186 4.186 23 C -0.112 4.112 24 C -0.087 4.087 25 H 0.091 0.909 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.266 0.734 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.084 0.916 34 H 0.046 0.954 35 H 0.105 0.895 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.134 0.866 39 H 0.100 0.900 40 H 0.116 0.884 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.242 11.279 -0.091 15.236 hybrid contribution -0.116 -0.249 0.242 0.366 sum -10.358 11.030 0.151 15.132 Atomic orbital electron populations 1.21891 0.91294 1.03386 1.02836 1.21357 0.97472 0.88091 0.99620 1.23249 0.77240 0.87920 0.78076 1.90704 1.34546 1.77335 1.36939 1.84534 1.70801 1.27176 1.50111 1.22604 1.01472 0.95503 0.94950 1.23232 0.99113 0.94992 0.91284 1.65011 1.49573 1.06128 1.02263 1.20919 0.96227 0.88801 0.95504 1.18803 0.95748 1.00500 1.05779 1.20333 0.93056 0.96989 0.98417 1.20967 0.98253 0.99196 1.06324 1.17612 0.91874 0.89986 0.89516 1.19594 1.10573 1.19049 1.00122 0.90546 1.25887 0.94672 0.97881 0.95622 1.69829 1.32835 1.36102 1.03125 0.86354 0.79770 0.81706 0.79211 1.19615 1.20083 1.18465 1.21254 0.93115 1.00605 1.03591 1.20486 0.97446 0.96216 0.97027 1.23070 0.96862 0.94198 0.94561 0.90912 0.91059 0.92030 0.73427 0.90381 0.89875 0.93738 0.88763 0.91646 0.95428 0.89519 0.89160 0.90991 0.86635 0.90003 0.88402 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.14 37.16 0.30 -0.93 16 2 C -0.06 -0.75 0.90 -154.30 -0.14 -0.89 16 3 C 0.49 6.08 6.85 36.01 0.25 6.33 16 4 O -0.51 -7.86 15.99 -18.75 -0.30 -8.16 16 5 O -0.51 -4.71 13.28 -39.24 -0.52 -5.23 16 6 C -0.11 -1.32 6.15 -24.87 -0.15 -1.47 16 7 C 0.04 0.63 5.67 -1.90 -0.01 0.62 16 8 N -0.51 -8.43 5.23 -231.88 -1.21 -9.65 16 9 C 0.11 1.97 4.85 -4.97 -0.02 1.95 16 10 C -0.21 -4.46 5.18 -104.33 -0.54 -5.00 16 11 C -0.07 -1.58 9.67 -39.66 -0.38 -1.96 16 12 C -0.23 -5.69 9.80 -38.87 -0.38 -6.07 16 13 C 0.11 3.02 5.57 -106.82 -0.60 2.42 16 14 C -0.46 -12.40 9.05 -37.74 -0.34 -12.75 16 15 H 0.08 1.97 7.91 -52.48 -0.41 1.56 16 16 C 0.08 1.94 5.14 -17.35 -0.09 1.85 16 17 N -0.79 -20.50 10.97 55.55 0.61 -19.89 16 18 Si 0.91 18.69 29.59 -169.99 -5.03 13.66 16 19 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 C -0.17 -4.28 8.70 -38.87 -0.34 -4.62 16 23 C -0.09 -2.11 8.79 -39.66 -0.35 -2.46 16 24 C 0.04 0.57 5.93 -2.75 -0.02 0.56 16 25 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.41 2.01 9.10 45.56 0.41 2.43 16 29 H 0.08 1.03 7.86 -51.93 -0.41 0.62 16 30 H 0.08 0.84 7.85 -51.93 -0.41 0.43 16 31 H 0.04 0.63 7.81 -51.93 -0.41 0.22 16 32 H 0.09 1.66 7.84 -51.93 -0.41 1.25 16 33 H 0.07 1.10 8.02 -51.93 -0.42 0.68 16 34 H 0.03 0.45 7.77 -51.93 -0.40 0.05 16 35 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 36 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 37 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 38 H 0.12 3.08 6.18 -52.48 -0.32 2.75 16 39 H 0.08 1.68 8.06 -52.48 -0.42 1.26 16 40 H 0.10 1.52 6.42 -51.93 -0.33 1.19 16 41 H 0.05 0.64 7.32 -51.92 -0.38 0.26 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -30.02 337.70 -9.33 -39.36 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.15 Total: 7.25 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -2.81 Total: -22.43 kcal Atomic # 7 Polarization: -28.93 SS G_CDS: -0.60 Total: -29.53 kcal Atomic # 8 Polarization: -12.57 SS G_CDS: -0.82 Total: -13.39 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.02 -9.33 -39.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399064664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.500 kcal (2) G-P(sol) polarization free energy of solvation -30.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds