Wall clock time and date at job start Tue Mar 31 2020 07:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50699 * 110.27335 * 2 1 4 4 O 1.20827 * 119.99709 * 237.91020 * 3 2 1 5 5 O 1.34225 * 120.00035 * 57.91203 * 3 2 1 6 6 C 1.54596 * 110.30840 * 122.19348 * 2 1 3 7 7 C 1.54942 * 102.92043 * 96.95621 * 6 2 1 8 8 N 1.48531 * 103.22725 * 37.41735 * 7 6 2 9 9 C 1.46901 * 110.99948 * 200.27853 * 8 7 6 10 10 C 1.50701 * 109.46990 * 287.39170 * 9 8 7 11 11 C 1.38635 * 119.74938 * 270.25654 * 10 9 8 12 12 C 1.37619 * 120.24352 * 180.25874 * 11 10 9 13 13 C 1.40711 * 119.74798 * 359.46791 * 12 11 10 14 14 C 1.41396 * 120.24787 * 180.29782 * 13 12 11 15 15 H 1.08005 * 119.99505 * 335.28837 * 14 13 12 16 16 C 1.39942 * 120.00083 * 155.28075 * 14 13 12 17 17 N 1.30817 * 120.00502 * 342.23482 * 16 14 13 18 18 Si 1.86807 * 119.99811 * 162.22853 * 16 14 13 19 19 H 1.48505 * 109.46906 * 94.66663 * 18 16 14 20 20 H 1.48499 * 109.47220 * 214.66572 * 18 16 14 21 21 H 1.48500 * 109.47278 * 334.66810 * 18 16 14 22 22 C 1.40719 * 119.50966 * 0.27391 * 13 12 11 23 23 C 1.37612 * 119.74521 * 0.02562 * 22 13 12 24 24 C 1.47905 * 105.81783 * 320.79196 * 8 7 6 25 25 H 1.09000 * 109.46902 * 182.09060 * 1 2 3 26 26 H 1.09000 * 109.47040 * 302.08992 * 1 2 3 27 27 H 1.09001 * 109.46823 * 62.09184 * 1 2 3 28 28 H 0.96699 * 116.99914 * 179.97438 * 5 3 2 29 29 H 1.08995 * 110.72513 * 215.31458 * 6 2 1 30 30 H 1.09000 * 110.72293 * 338.42542 * 6 2 1 31 31 H 1.08998 * 110.66654 * 278.97744 * 7 6 2 32 32 H 1.09004 * 110.66502 * 155.84886 * 7 6 2 33 33 H 1.09003 * 109.46692 * 167.39476 * 9 8 7 34 34 H 1.08997 * 109.47290 * 47.39707 * 9 8 7 35 35 H 1.07995 * 119.87697 * 0.02562 * 11 10 9 36 36 H 1.07999 * 120.12174 * 179.73950 * 12 11 10 37 37 H 0.97001 * 120.00527 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.12678 * 180.02562 * 22 13 12 39 39 H 1.08006 * 119.87565 * 179.97438 * 23 22 13 40 40 H 1.08999 * 109.91721 * 144.68430 * 24 8 7 41 41 H 1.09009 * 109.91412 * 265.77967 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0522 1.4136 0.0000 4 8 2.7830 1.7877 -0.8865 5 8 1.7055 2.2572 0.9848 6 6 2.0666 -0.7725 1.2270 7 6 2.3584 -2.1803 0.6495 8 7 2.8810 -1.8885 -0.7099 9 6 2.7668 -3.0654 -1.5816 10 6 3.7893 -4.0943 -1.1729 11 6 5.0524 -4.0736 -1.7440 12 6 5.9922 -5.0115 -1.3822 13 6 5.6707 -5.9871 -0.4205 14 6 6.6303 -6.9519 -0.0363 15 1 7.4319 -7.2145 -0.7108 16 6 6.5414 -7.5663 1.2179 17 7 5.8114 -7.0273 2.1602 18 14 7.4652 -9.1563 1.5466 19 1 8.7738 -8.8473 2.1769 20 1 6.6664 -10.0134 2.4590 21 1 7.6899 -9.8723 0.2651 22 6 4.3873 -5.9951 0.1565 23 6 3.4613 -5.0513 -0.2250 24 6 2.0646 -0.7673 -1.2235 25 1 -0.3633 -1.0270 0.0375 26 1 -0.3633 0.5459 0.8707 27 1 -0.3633 0.4810 -0.9082 28 1 2.0657 3.1536 0.9422 29 1 2.9806 -0.3127 1.6027 30 1 1.3114 -0.8232 2.0112 31 1 1.4433 -2.7696 0.5916 32 1 3.1105 -2.6936 1.2488 33 1 2.9423 -2.7697 -2.6160 34 1 1.7672 -3.4901 -1.4897 35 1 5.2985 -3.3209 -2.4784 36 1 6.9742 -4.9961 -1.8315 37 1 5.7495 -7.4534 3.0294 38 1 4.1300 -6.7391 0.8959 39 1 2.4755 -5.0558 0.2162 40 1 2.6813 -0.1083 -1.8346 41 1 1.2344 -1.1531 -1.8153 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399064664.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:51 Heat of formation + Delta-G solvation = -93.585214 kcal Electronic energy + Delta-G solvation = -22689.044943 eV Core-core repulsion = 19339.142301 eV Total energy + Delta-G solvation = -3349.902642 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 289.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.83740 -40.00172 -38.97365 -37.12311 -35.90136 -34.50489 -31.88204 -31.20213 -30.53974 -28.50077 -26.88781 -25.45888 -24.28785 -23.01190 -22.25372 -21.39855 -20.65346 -19.19491 -18.88629 -17.97896 -17.17409 -16.80924 -16.48931 -16.06256 -15.76873 -15.63311 -15.30067 -14.91986 -14.40985 -14.24269 -13.91053 -13.77143 -13.68006 -13.36273 -13.33862 -12.99623 -12.89445 -12.69924 -12.67889 -12.55219 -12.45410 -12.13808 -12.00928 -11.93672 -11.74422 -11.37528 -11.33604 -11.21069 -10.97925 -9.38442 -9.25752 -9.11260 -8.61633 -6.30740 0.97048 1.16388 1.19070 1.38248 1.48732 1.54546 2.03977 2.21960 2.69238 3.19627 3.31163 3.57675 3.80751 3.90914 4.18447 4.25323 4.29683 4.33402 4.41703 4.54130 4.62910 4.69778 4.74408 4.79815 4.84370 4.89171 4.98343 5.04849 5.06641 5.08251 5.18638 5.25819 5.39946 5.51013 5.58357 5.73844 5.94713 6.02190 6.12725 6.18007 6.31682 6.43256 6.73429 6.97262 6.97290 7.07339 8.35394 Molecular weight = 289.15amu Principal moments of inertia in cm(-1) A = 0.030008 B = 0.003293 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.852408 B = 8501.387786 C = 8743.272935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.061 4.061 3 C 0.498 3.502 4 O -0.547 6.547 5 O -0.504 6.504 6 C -0.099 4.099 7 C 0.041 3.959 8 N -0.530 5.530 9 C 0.117 3.883 10 C -0.193 4.193 11 C -0.077 4.077 12 C -0.247 4.247 13 C 0.080 3.920 14 C -0.505 4.505 15 H 0.071 0.929 16 C 0.037 3.963 17 N -0.825 5.825 18 Si 0.980 3.020 19 H -0.264 1.264 20 H -0.264 1.264 21 H -0.260 1.260 22 C -0.189 4.189 23 C -0.090 4.090 24 C 0.043 3.957 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.069 0.931 28 H 0.427 0.573 29 H 0.063 0.937 30 H 0.111 0.889 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.287 0.713 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.754 12.354 0.268 17.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.063 4.063 3 C 0.341 3.659 4 O -0.437 6.437 5 O -0.317 6.317 6 C -0.137 4.137 7 C -0.087 4.087 8 N -0.255 5.255 9 C -0.009 4.009 10 C -0.195 4.195 11 C -0.095 4.095 12 C -0.266 4.266 13 C 0.078 3.922 14 C -0.535 4.535 15 H 0.089 0.911 16 C -0.178 4.178 17 N -0.451 5.451 18 Si 0.801 3.199 19 H -0.189 1.189 20 H -0.188 1.188 21 H -0.184 1.184 22 C -0.208 4.208 23 C -0.109 4.109 24 C -0.084 4.084 25 H 0.100 0.900 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.288 0.712 29 H 0.082 0.918 30 H 0.130 0.870 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.125 0.875 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.118 0.882 39 H 0.124 0.876 40 H 0.097 0.903 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.245 12.197 0.297 17.286 hybrid contribution 0.432 -0.341 0.105 0.561 sum -11.813 11.856 0.402 16.741 Atomic orbital electron populations 1.21899 0.88611 1.04354 1.03989 1.21343 0.99429 0.87467 0.98029 1.23330 0.76345 0.88401 0.77821 1.90701 1.36300 1.78149 1.38566 1.84481 1.70317 1.28313 1.48587 1.22557 1.01806 0.93577 0.95794 1.23184 0.98580 0.96670 0.90263 1.64815 1.51470 1.06315 1.02854 1.20840 0.95623 0.88335 0.96148 1.19254 0.96069 1.00395 1.03735 1.20631 0.93301 0.96780 0.98815 1.21145 0.99041 0.99809 1.06646 1.17945 0.92643 0.90962 0.90677 1.19824 1.11367 1.20984 1.01324 0.91087 1.26710 0.95498 1.00841 0.94732 1.69874 1.34029 1.37514 1.03683 0.85234 0.78548 0.77090 0.79056 1.18859 1.18801 1.18425 1.21239 0.93698 1.01667 1.04210 1.20723 0.97904 0.95406 0.96854 1.23010 0.96823 0.93069 0.95533 0.90043 0.89622 0.91224 0.71156 0.91801 0.87046 0.92177 0.92036 0.90639 0.93532 0.87494 0.89148 0.90196 0.88233 0.87597 0.90277 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.14 71.98 0.59 -1.25 16 2 C -0.06 -1.27 0.90 -52.05 -0.05 -1.32 16 3 C 0.50 11.22 6.85 71.24 0.49 11.71 16 4 O -0.55 -16.37 15.99 21.96 0.35 -16.01 16 5 O -0.50 -7.77 13.28 -51.37 -0.68 -8.46 16 6 C -0.10 -2.21 6.15 31.80 0.20 -2.02 16 7 C 0.04 1.16 5.67 86.65 0.49 1.65 16 8 N -0.53 -16.77 5.23 -887.54 -4.65 -21.42 16 9 C 0.12 3.88 4.85 85.56 0.41 4.29 16 10 C -0.19 -8.17 5.18 -19.67 -0.10 -8.28 16 11 C -0.08 -3.51 9.67 22.22 0.21 -3.29 16 12 C -0.25 -12.74 9.80 22.73 0.22 -12.52 16 13 C 0.08 4.46 5.57 -21.29 -0.12 4.34 16 14 C -0.51 -28.22 9.05 23.46 0.21 -28.01 16 15 H 0.07 3.86 7.91 -2.91 -0.02 3.84 16 16 C 0.04 1.90 5.14 85.26 0.44 2.34 16 17 N -0.82 -43.80 10.97 21.82 0.24 -43.57 16 18 Si 0.98 38.97 29.59 68.60 2.03 41.00 16 19 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 20 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 21 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 22 C -0.19 -10.02 8.70 22.73 0.20 -9.82 16 23 C -0.09 -4.09 8.79 22.22 0.20 -3.90 16 24 C 0.04 1.11 5.93 86.44 0.51 1.62 16 25 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.08 0.99 8.08 -2.39 -0.02 0.97 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.43 3.07 9.10 -74.06 -0.67 2.40 16 29 H 0.06 1.60 7.86 -2.39 -0.02 1.58 16 30 H 0.11 1.85 7.85 -2.39 -0.02 1.83 16 31 H 0.06 1.52 7.81 -2.39 -0.02 1.50 16 32 H 0.06 2.15 7.84 -2.38 -0.02 2.14 16 33 H 0.08 2.35 8.02 -2.39 -0.02 2.33 16 34 H 0.05 1.37 7.77 -2.39 -0.02 1.36 16 35 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 36 H 0.09 4.49 8.06 -2.91 -0.02 4.47 16 37 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 38 H 0.10 5.52 6.18 -2.91 -0.02 5.50 16 39 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 40 H 0.08 2.37 6.42 -2.39 -0.02 2.35 16 41 H 0.07 1.54 7.32 -2.38 -0.02 1.52 16 Total: -1.00 -67.37 337.70 1.56 -65.81 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.36 Total: 27.09 kcal Atomic # 6 Polarization: -48.35 SS G_CDS: 3.90 Total: -44.44 kcal Atomic # 7 Polarization: -60.58 SS G_CDS: -4.41 Total: -64.98 kcal Atomic # 8 Polarization: -24.14 SS G_CDS: -0.33 Total: -24.47 kcal Atomic # 14 Polarization: 38.97 SS G_CDS: 2.03 Total: 41.00 kcal Total: -67.37 1.56 -65.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399064664.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.777 kcal (2) G-P(sol) polarization free energy of solvation -67.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds